Life Sciences Commons^™

Identifying And Knocking Out Non-Visual Opsins In The Optic Tectum Of Zebrafish Larvae, Sarah Jarrett

Undergraduate Honors Theses

Deep brain photoreceptors (DBPs) are non-visual photoreceptors found in the brains of non-mammalian vertebrates like zebrafish. While using optogenetic techniques in our lab to photo-activate the ear (by expressing the light-gated channel: channelrhodopsin) in efforts of identifying optic tectum (OT) neurons that respond to and integrate auditory and visual stimuli, we found that violet light was able to elicit OT neuronal activity. OT activity was also detected in cases when visual and auditory stimulation was not possible due to removal of the eyes and absence of the exogenously expressed channelrhodopsin, respectively. Analyzing OT single-cell sequencing data of 7day post fertilization …

Effects Of Catharanthine On Dopamine Release In The Nucleus Accumbens And Ethanol Consumption, Emily Baldwin

Undergraduate Honors Theses

This thesis discusses the history of catharanthine and related compounds, and their potential anti-addictive properties. Current research is exploring possible mechanisms of these properties. Past studies have found catharanthine has effects on neurons that project to the mesocorticolimbic system, an area implicated in addiction. We have seen that catharanthine decreases evoked dopamine (DA) release but increases basal DA release. This is the first study to investigate catharanthine’s effect on DA transmission in vivo. Using microdialysis, we determined the effect of catharanthine on DA in the nucleus accumbens of the striatum. This study determines the effect of different doses of …

Effects Of Maternal And Neonatal Hypoxia On The Future Life History Of Daphnia Magna, Rachael Lowman

Undergraduate Honors Theses

Early exposure to hypoxia is related to a variety of physiological and metabolic changes that have lasting effects on organisms’ physiology and life history. We measured the effects of maternal and embryonic mild, intermittent hypoxia on the life history of four clones of microcrustacean Daphnia magna, an emerging model organism for the studies of senescence and longevity. Daphnia individuals were produced parthenogenically, maintained in individual vials, and fed standard algal concentration daily. The cohort consisted of 189 individuals. We measured body size at first reproduction, fecundity (including late-life fecundity peak), offspring sex ratio, and longevity. We found no effect …

On The Relationship Of Diabetes And Sleep Apnea: Evolution And Epigenetics, Nancy Wilson

Undergraduate Honors Theses

This thesis gives an overview of the relationship between diabetes, sleep apnea, obesity, and heart disease. It then addresses evidence that the traditional understanding of this relationship is incomplete or misleading. In the process, there is a brief discussion of the evolutionary rationale for the development and retention of sleep apnea in light of blood sugar dysregulation, as an adaptive mechanism in response to environmental stressors, followed by a brief overview of the general concepts of epigenetics. Finally, this paper presents the results of a literature search on the epigenetic marks and changes in gene expression found in sleep apnea …

Facing Fears When Fearing Faces: Binocular Rivalry Perceptual Alternation And Approach-Avoidance In College-Aged Women With Autistic Traits And A History Of Adverse Experiences, Sarah Kamhout

Undergraduate Honors Theses

Women with Autism Spectrum Conditions (ASCs) may be more likely to experience symptoms of trauma exposure due to greater likelihood of facing adverse childhood experiences (ACEs). In order to gain a better understanding of the neural mechanisms involved with ASC and PTSD in women who experience difficulty with social interactions, I examined the ability of two vision tasks-- Binocular Rivalry Perceptual Alternation (BR) and Visual Approach/Avoidance by the Self Task (VAAST)-- to predict symptoms of both conditions as well as differentiate between them. I also examined differences in response to neutral or emotional (angry or fearful) faces under both paradigms. …

Validity Of Intrinsic Foot Muscle Size Measured By Ultrasound And Mri, Dallin Swanson

Undergraduate Honors Theses

Intrinsic foot muscles maintain foot structural integrity and contribute to functional movement, posture and balance. Thus, assessing intrinsic foot muscle size and strength are important. Magnetic resonance imaging (MRI) has been shown to accurately image the individual muscles but is costly and time consuming. Ultrasound (US) imaging may provide an alternative that is less costly and more readily available. The purpose of this study was to investigate the validity and reproducibility of US imaging in measuring intrinsic foot muscle size in comparison to MRI. US and MRI were employed to measure the intrinsic foot muscle size involving 35 participants (females …

A Fret Flow Cytometry-Based Screening Assay For Multiplex Analysis Of Metabolites In T. Brucei, Ronald A. Zegarra

Undergraduate Honors Theses

Kinetoplastid parasites are a significant public health issue in some tropical and subtropical regions of the world. Kinetoplastid parasites all require glycolysis for survival, with host glucose key for ATP production. One such parasite, Trypanosoma brucei, exclusively metabolizes glucose in its bloodstream form. Trypanosomal glycolysis is unique because it displays unconventional structural features. Hence, glucose metabolism has been studied extensively in T. brucei and is a therapeutic target in kinetoplastid parasites.The lack of in vivo analytical techniques for measuring vital glycolytic metabolites in situ has restricted the ability of researchers to test, with high sensitivity and specificity, the essential roles …

Racial And Ethnic Minority Groups Are Under-Represented And Under-Reported In Guideline-Informing Heart Failure Clinical Trials, Gerardo Gamino

Undergraduate Honors Theses

Heart failure (HF) is a common cause of morbidity and mortality in the United States that may disproportionately affect certain racial/ethnic groups. Compared with White individuals, HF may affect Black individuals at a younger age with less favorable prognosis, and this excess risk may be partially explained by differences in HF risk factor burden. It is crucial for guideline informing HF clinical trials to adequately reflect the racial/ethnic diversity in the population. We assessed the extent of reporting and representation of race/ethnicity in HF clinical trials referenced in the 2013 ACC/AHA Guideline for the Management of Heart Failure and the …

Exploration Of Fluorinated Α,Β-Dehydroamino Acids And Their Structure, Austin Lesueur

Undergraduate Honors Theses

This thesis explores the synthesis of fluorinated α,β-dehydroamino acids, specifically a fluorinated dehydrovaline derivative. Previous work has been done on the equivalent dehydrovaline derivative without fluorine present and this work builds toward the fluorinated version with the goal of comparing the two structurally. The synthesis presented here pulls from previous synthetic strategies employed for dehydrovaline while also exploring the synthetic impact of the electronegative fluorine atoms.

Preventing Alzheimer's: Effects Of Second Language Acquisition In Older Populations, Joshua Rhead

Undergraduate Honors Theses

Alzheimer’s disease continues to be a problem that medicine has few answers for. As a result, much research has been focused on finding a cure as well as interventions to help prevent the onset of the disease. One such intervention that has been proposed is to improve the brain’s efficiency and connectivity. A controversial method of achieving these results is through second language acquisition. Many provide evidence for or against the benefits of this intervention, but much remains unclear. Most of these studies focus on cognitive function and functional connectivity in language areas, but the default mode network, which is …

Construction Of Dichotomous Taxonomic Keys For San Francisco Bay Planktonic Diatoms, Ria Angelica Laxa

Undergraduate Honors Theses

Planktonic diatoms exhibit high biodiversity in marine systems and make a significant contribution to water column primary productivity. This makes research on planktonic diatoms particularly important in measuring the health of coastal marine ecosystems. At the University of San Francisco (USF), undergraduate research has been conducted since September 2015 to study planktonic diatoms in San Francisco Bay. A previous study by Keith (2018), Planktonic Diatom Species Succession in San Francisco Bay, documented changes in species diversity over time, observing seasonal patterns in species richness as well as the effect of environmental factors such as salinity, temperature, and rainfall on species …

Effects Of Xanomeline On Attention In Rats, Grace Smith

Undergraduate Honors Theses

The cholinergic system plays a large role in regulating attentional processing. Diseases such as Alzheimer’s Disease are known to degrade cholinergic neurons and deactivate cholinergic M1 receptors. Dysfunction in the cholinergic system results in a wide range of cognitive deficits, including a decrease in attention. The cholinergic system has been a focus of drug research to help modulate acetylcholine levels in order to relieve AD symptoms. Xanomeline is a drug previously used in this endeavor that works via agonism of acetylcholine M1 and M4 receptors. Cognitive improvements of Xanomeline administration in AD are thought to be due to agonism of …

Welcoming The Game Changer Of Human Society: A Defense Of The Moral Permissibility And Obligations Of Human Genetic Engineering, Yongkang Li

Undergraduate Honors Theses

In 2018, a Chinese scientist, Jiankun He, announced the birth of two HIV-resistant babies through his experiment of human genetic engineering. This incidence has soon shocked the entire scientific community and invoked public outrage towards He’s corrupt moral integrity.

However, this event should also act as a harbinger to the human society that the technique of human genetic engineering is rapidly approaching maturity. In that case, how should we respond?

This thesis focuses on the moral issues surrounding human genetic engineering and advertises an accepting moral attitude to this booming technology. This thesis will first discuss the types of human …

Attentional Dysfunction In Schizophrenia: The Effects Of Dual Orexin Receptor Blockade On An Nmda Receptor Hypofunction Model, Paige Little

Undergraduate Honors Theses

Hypofunctionality at the N-Methyl-D-aspartic acid receptor (NMDAR) is a commonly used model of the neurodevelopmental disorder schizophrenia due to the complex circuitry changes that follow NMDAR blockade. While these animal models are very popular for modeling the cognitive deficits seen in schizophrenia, actual treatments for this disorder remain sparse. Orexins (hypocretins) are neuropeptides that are capable of modulating activity along pathways relevant to attention, but are rarely tested for their efficacy in attenuating attentional dysfunction. This study was conducted to determine if systemic administration of the dual orexin receptor antagonist filorexant (MK-6096) was able to attenuate sustained attentional dysfunction induced …

Three Centuries Of Vegetation Change In The William & Mary College Woods Reconstructed Using Phytoliths, Timothy Terlizzi

Undergraduate Honors Theses

The College Woods, west of William & Mary’s campus, consists of ~900 acres of protected southern mixed hardwood forest. The woods surround Lake Matoaka, a former millpond established in ~1700. Despite the rich history of the area, little is known about how the dominant vegetative landcover has shifted over the last 300 years. This study set out to quantify the modern vegetation within the College Woods via the phytolith assemblages within the soil and identify shifts in the assemblages since the creation of Lake Matoaka and whether these changes are distinct from the vegetation that existed in the area before …

Rapid Morphological Divergence In Three Introduced Cichlid Species, Khalil Russell

Undergraduate Honors Theses

Cichlids are well-known for their capacity to exploit trophic niches in their environments through rapid speciation and morphological diversification; the best-documented case of such diversification in cichlids occurred in the African Rift Valley. With numerous species established in Florida, the purpose of this study was to explore how members of the family Cichlidae have managed to invade so successfully by focusing on morphological differences between native and non-native (Floridian) populations of three cichlid species: Pelmatolapia mariae, Mayaheros urophthalmus, and Parachromis managuensis. Using both linear measurements and 2D landmark geometric morphometry, I found that all three species have diverged in …

Characterizing The Microbiome Of Floral Nectar Of Asclepias Syriaca And Other Asclepias Species, Heather Natterer

Undergraduate Honors Theses

In recent decades, Danaus plexippus (the monarch butterfly) has experienced a drastic decrease in population size due to urbanization, climate change, and habitat loss. The primary habitat and food source of D. plexippus is plant species that are within the genus Asclepias (milkweed). The preservation and propagation of Asclepias spp. is necessary to combat D. plexippus’s population declines. A plant’s reproductive success is dependent upon its ability to attract pollinators, which is linked to the plant’s nectar qualities. We propose that, in turn, these nectar qualities may be influenced by the nectar microbiome. This study aims to better understand the …

Cacna1g Transcript Knockdown Analysis Via In Situ Hybridization, Jennifer (Shih-En) Chen

Undergraduate Honors Theses

The pedunculopontine nucleus (PPN) comprises the mesencephalic locomotor region (MLR) of the midbrain. It contains glutamatergic, cholinergic, and GABAergic interneurons, but only glutamatergic neurons influence locomotion, which is our focus here. The PPN receives upstream and downstream input from the basal ganglia. It projects to the reticular formation of the brainstem, which connects to the spinal cord. The PPN is involved in a wide range of physiological and behavioral processes, but our focus is locomotion. We hypothesize that the PPN influences the reticular activating system (RAS) of the medulla and thus the central pattern generators (CPG) in the spinal cord …

Proteomic Analysis Of Mycobacteriophage Crimd, William Moeller

Undergraduate Honors Theses

Bacteriophages represent a large portion of the biomatter on our planet, and many of them have yet to be fully characterized. Here we discuss the proteomic analysis of a particular Bacteriophage, Mycobacteriophage CrimD. This phage was discovered on the Campus of William & Mary and has had its genome characterized. We took the next logical step of proteomic analysis.

In our analyses we made use high pressure liquid chromatography paired with linear ion trap mass spectrometry to analyze the proteome of CrimD at specific time points after the infection of its host, Mycobacterium smegmatis. Additionally, we used nanospray ionization with …

Effects Of Gamete Age On Development In Asterias Forbesi, Amanda Yeo

Undergraduate Honors Theses

For broadcast spawning organisms like echinoderms, the timing of the union of gametes is essential for successful fertilization. However, the release of gametes is not always synchronous and the success of fertilization is highly dependent upon a number of factors including: the number and distribution of spawning adults, the timing of gamete release, the dispersal of gametes, the interaction of gametes within the water column, turbulence in the water column, and the phenotypic properties (e.g. size) of the gametes themselves. Previous studies have shown that the longer sperm is in the water column the greater their mobility decreases and they …

Mysteries And Uncertainties In Tracing Cryptic Viral Infections, Melaina Jacoby

Undergraduate Honors Theses

Viruses are the most abundant biological entities on Earth. Viral impacts are evident from the level of individual cells and population all the way up to ecosystems and global elemental cycles. Since bacteriophages (viruses that infect bacteria) were first identified in the early twentieth century, the study of these fascinating entities has shown how viral dynamics within ecosystems can influence microbially-mediated processes at a large scale. Viral infections can impact hosts and host-mediated processes in in multiple ways, one of which is through cryptic infections. This state, in which a bacterium may harbor a cryptic phage infection, is known as …

Reaction Pathways Initiated By One-Electron Oxidation Of Guanine: Reaction Pathways Leading To Stable End Products, Zach Cutright

Undergraduate Honors Theses

8-hydroxyguanine (8-oxoG) is one of the most important products resulting from the oxidation of guanine in DNA. 8-oxoG is known as a biomarker of oxidative stress such as lung cancer. 2,5-diamino-4H-imidazol-4-one (Iz) and its hydrolysis product 2,2-diamino-4-[(2-deoxy-β-D-erythro-pentofuranosyl)-amino]-2,5-dihydrooxazol-5-one (Oz) are also important products of oxidation of guanine in DNA. Recently, novel types of dimer intermediates related to 8-oxoG and Iz have been identified in our research lab. Using high performance liquid chromatography (HPLC), LC-MS, and NMR coupled with educated hypotheses, it is possible to identify the products, X1 and X2, resulting from the oxidation of guanine and decipher the mechanisms leading …

Synthetic Viral Pyrogen Induces Behavioral Fever In Plethodon Glutinosus Salamanders, Nicholas Britt

Undergraduate Honors Theses

Behavioral fever is an essential coping mechanism across ectothermic phyla to aid in combating pathogenic threats. Ectotherms lack internal temperature regulation associated with fever in endotherms; thus, ectotherms can exhibit a behavioral fever response when immunocompromised to thermoregulate by moving to warmer locations. The salamander order Caudata, tend to be keystone species in their resident ecosystems through their role as secondary consumers of invertebrates to maintain the food chain. With growing interest about ecology and conservation of salamanders as species diversity declines, this study was designed to determine if salamanders use their environment to take advantage of behavioral fever. The …

Partial Expression Of The Vbss Gene In Rhizobium Leguminosarum Atcc 14479 And In-Silico Analysis Of The Vbs Gene Cluster In Various Microorganisms, Afreen Siddiqui

Undergraduate Honors Theses

Iron is extremely important for many organisms. Despite its abundancy, it exists in insoluble forms that makes its usability difficult. Some organisms secrete siderophores, low molecular weight compounds, that can chelate iron and convert it into usable forms for cells. One such organism, Rhizobium leguminosarum, is a nitrogen fixing symbiont proteobacteria that infects leguminous plants. The genome of Rhizobium leguminosarum ATCC 14479, which infects the red clover, Trifoli pratense, has previously been completely sequenced in our lab. Our lab has identified several genes in this strain involved in the biosynthesis of a siderophore, vicibactin. The protein product of one of …

Composition, Diversity, Abundance, And Spatial Variation In The Floral Nectar Mycobiome Of Rhododendron Catawbiense And Lobelia Cardinalis, Ayesha Khan

Undergraduate Honors Theses

Plant nectar microbiome, primarily consisting of fungi and bacteria, can qualitatively and quantitively alter the floral rewards by exploiting the chemical composition of the nectar which can thus impact plant-pollinator interactions, and ultimately affect plant reproductive success. Evidence suggests that changes in the microenvironmental conditions across various spatial gradients can induce changes in the floral nectar microbiome, which can account for microbial variation not only across plant species, but also within. Furthermore, nectar microbiome is also contingent on the pollinator systems and nectar quality. In this study, we used Rhododendron catawbiense (bee-pollinated; highly toxic nectar) and Lobelia cardinalis (hummingbird-pollinated; mildly …

Telsam-Target Protein Fusions Can Form Diffraction-Quality Crystals Without Direct Inter-Polymer Contacts, Moriah Longhurst

Undergraduate Honors Theses

X-ray diffraction is a robust method for determining the detailed 3D structures of specific proteins. However, this requires the formation of well-ordered protein crystals, a process that is time-consuming, expensive, and only has about a 10-30% success rate. New methods are needed to enable the efficient crystallization of challenging proteins. One such technique is explored here, which utilizes a protein polymer (the sterile alpha motif domain of the human protein translocation Ets leukemia, or TELSAM) as a crystallization chaperone to form a more ordered crystal lattice of target proteins and drive crystallization. This method was successfully used to crystallize, collect …

Lymphocyte Proteomics For Monitoring Long Term Immune System Dynamics, Michaela Mccown

Undergraduate Honors Theses

Time dependent change in lymphocytes provides a necessary background for monitoring the development of Chronic Lymphocytic Leukemia from asymptomatic to malignant. Several bulk proteomics studies characterize differences between tumor cells and healthy B cells, yet the transition to symptomatic disease is not well understood. This could be shown by a longitudinal study beginning with asymptomatic patients if the rare tumor cells in early stages can be isolated from small volume blood draws and effectively characterized with few cells, such as was done here using healthy B cells to provide a baseline for such studies to discriminate routine fluctuation from pathogenic …

The Functionally Relevant Role Of Sdrna-19b And Sdrna-24 In Prostate Cancer, Addison A. Barchie

Undergraduate Honors Theses

In recent studies small nucleolar RNAs (snoRNA) have been shown to be processed into smaller microRNA-like fragments known as sno-derived RNA (sdRNA). We recently identified 9 snoRNAs that contribute to prostate malignancy using The Cancer Genome Atlas (TCGA) patient prostate tumor next-generation sequencing datasets. These snoRNA were found to be processed into sdRNAs, heavily misexpressed in prostate cancer cell types 8140 and 8550, and shown to function by binding Ago proteins in order to impact mRNA translation. SdRNA-19b and sdRNA-24 in particular stood out as having significant differential expression in prostate cancer vs. control tissue. Interestingly, the targets for sdRNA-19b …

The Role Of Inflammasome In Vascular Remodeling Following Injury, Ted Amadi

Undergraduate Honors Theses

The purpose of the project presented in this thesis is to assess the contribution of inflammasome activation in mediating vascular wall remodeling that occurs following carotid artery injury due to decreased blood flow. To examine this, we used a mouse model of carotid artery ligation in mice lacking the expression of a key mediator of the inflammasome signaling pathway. Following ligation, we completed a histological assessment to compare the degree of the neointima formation and expression of inflammasome related proteins in both injured and the non-injured contralateral carotid artery in both wild-type (WT) and Caspase 1 knockout mice (Cas1 -/-).

Relationship Between Narcissism, The Economy, And The Pandemic, Ruby A. Staten

Undergraduate Honors Theses

Narcissists are more likely to be found in individualistic cultures. The study focuses on the economic decline associated from the pandemic and the reduced narcissism levels in the population. Narcissism levels from the University of South Alabama undergraduate students would be lower in Fall 2020 compared to Fall 2019. This was assessed using students enrolled in introductory psychology courses during either Fall 2019 or Fall 2020 semesters who completed the Narcissistic Personality Inventory during a subject pool registration process. Predictions were made that the NPI scores would be lower for the Fall 2020 sample compared to the Fall 2019 sample.