Plant Pathology Commons^™

Over-Summering Ecology Of The Wheat Curl Mite (Aceria Tosichella Keifer), Anthony J. Mcmechan

Department of Entomology: Dissertations, Theses, and Student Research

The wheat-mite-virus complex is a consistent and significant threat to winter wheat production in the western Great Plains. This complex consists of three viruses (Wheat streak mosaic virus, Triticum mosaic virus, and Wheat mosaic virus that are transmitted by the wheat curl mite (Aceria tosichella Keifer). Yield impacts from this complex are typically associated with the presence of volunteer wheat that emerges prior to harvest as a result of hail occurring during the heading stages of wheat in early summer. Historical literature on pre-harvest germination has been primarily focused on accelerating breeding programs; however, critical gaps in knowledge exist on …

Diversity And Virulence Of Soybean Cyst Nematode (Heterodera Glycines Ichinohe) In Nebraska, Kyle C. Broderick

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Soybean cyst nematode (SCN, Heterodera glycines Ichinohe) is one of the most economically important soybean pathogens in the United States. Best management practices are the use of resistant cultivars and crop rotation. Though there are several genetic sources of SCN resistance, most of the SCN-resistant cultivars are derived from a single resistance source (PI 88788). Other states have reported an increase in virulence to PI 88788 due to prolonged use of this resistance. In this thesis, two studies were conducted to characterize the diversity and virulent phenotypes of SCN populations in Nebraska.

The first study assessed the virulent phenotypes of …

Morphological And Molecular Identification And Characterization Of Dry Bean Fungal Root Rot Pathogens In Zambia, Chikoti Mukuma

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Dry bean is among the most important food legume crops for direct human consumption in Latin America and Africa. Recently, root and crown rot (RCR) has emerged as an important production constraint. Root and crown rot often involve fungal complexes. Thus, the straw, detached leaf, cup and stem tests were compared on their ability to detect the most common pathogens reported to be associated with RCR: Fusarium solani, Fusarium oxysporum, Pythium ultimum, Rhizoctonia solani and Macrophomina phaseolina.Significant differences (P

Next Generation Sequencing (NGS), conventional Polymerase Chain Reaction (PCR), and classical fungal culturing methods were compared in identification of …

Characterization Of Sip470, A Family 1 Lipid Transfer Protein And Its Role In Plant Stress Signaling, Timothy Ndagi Audam

Electronic Theses and Dissertations

SIP470, a putative tobacco lipid transfer protein, was identified in a yeast two-hybrid screen to interact with SABP2. SABP2 is a critical role in SA-mediated signaling in tobacco and other plants. In vitro studies using purified recombinant SIP470 confirmed that it is a lipid binding protein. In an attempt to determine its role in mediating stress responses, Arabidopsis T-DNA insertion knockout lines lacking SIP470 homolog were used for the analysis. These mutant plants were defective in basal resistance against microbial pathogens. Expression of defense gene PR-1 was also delayed in these mutant plants. Interestingly, these mutant plants were not defective …

Comparative Genomics, Transcriptomics, And Physiology Distinguish Symbiotic From Free-Living Chlorella Strains, Cristian F. Quispe, Olivia Sonderman, Maya Khasin, Wayne R. Riekhof, James L. Van Etten, Kenneth Nickerson

Kenneth Nickerson Papers

Most animal–microbe symbiotic interactions must be advantageous to the host and provide nutritional benefits to the endosymbiont. When the host provides nutrients, it can gain the capacity to control the interaction, promote self-growth, and increase its fitness. Chlorella-like green algae engage in symbiotic relationships with certain protozoans, a partnership that significantly impacts the physiology of both organisms. Consequently, it is often challenging to grow axenic Chlorella cultures after isolation from the host because they are nutrient fastidious and often susceptible to virus infection. We hypothesize that the establishment of a symbiotic relationship resulted in natural selection for nutritional and metabolic …

Rna-Seq Based Analysis Of Population Structure Within The Maize Inbred B73, Zhikai Liang, James C. Schnable

Center for Plant Science Innovation: Faculty Publications

Recent reports have shown than many identically named genetic lines used in research around the world actually contain large amounts of uncharacterized genetic variation as a result of cross contamination of stocks, unintentional crossing, residual heterozygosity within original stocks, or de novo mutation. 27 public, large scale, RNA-seq datasets from 20 independent research groups around the world were used to assess variation within the maize (Zea mays ssp. mays) inbred B73, a four decade old variety which served as the reference genotype for the original maize genome sequencing project and is widely used in genetic, genomic, and phenotypic research. Several …

Antiviral Rna Silencing Suppression Activity Of Tomato Spotted Wilt Virus Nss Protein, Tania Ocampo Ocampo, Sergio M. Gabriel Peralta, Nicole Bacheller, Stella Uiterwaal, Aaron Knapp, Alanna Hennen, Daniel Leobardo Ochoa-Martínez, Hernan Garcia-Ruiz

Department of Plant Pathology: Faculty Publications

In addition to regulating gene expression, RNA silencing is an essential antiviral defense system in plants. Triggered by double-stranded RNA, silencing results in degradation or translational repression of target transcripts. Viruses are inducers and targets of RNA silencing. To condition susceptibility, most plant viruses encode silencing suppressors that interfere with this process, such as the Tomato spotted wilt virus (TSWV) NSs protein. The mechanism by which NSs suppresses RNA silencing and its role in viral infection and movement remain to be determined. We cloned NSs from the Hawaii isolate of TSWV and using two independent assays show for the first …

Description Of Mesocriconema Ericaceum N. Sp. (Nematoda: Criconematidae) And Notes On Other Nematode Species Discovered In An Ericaceous Heath Bald Community In Great Smoky Mountains National Park, Usa, Thomas O. Powers, Peter Mullin, Rebecca Higgins, Timothy Harris, Kirsten S. Powers

Department of Plant Pathology: Faculty Publications

A new species of Mesocriconema and a unique assemblage of plant-parasitic nematodes was discovered in a heath bald atop Brushy Mountain in Great Smoky Mountains National Park. Mesocriconema ericaceum n. sp., a species with males, superficially resembles M. xenoplax. DNA barcoding with the mitochondrial COI gene provided evidence of the new species as a distinct lineage. SEM revealed significant variability in arrangement of labial submedian lobes, plates, and anterior and posterior annuli. Three other nematodes in the family Criconematidae were characterized from the heath bald. Ogma seymouri, when analyzed by statistical parsimony, established connections with isolates from north-eastern Atlantic …

Exploration Of Chemical And Biological Management Strategies For Diaphorina Citri The Primary Vector Of Candidatus Liberibacter Asiaticus, Gretta Marie Sharp

Biology Theses

Diaphorina citri (Hemipteran: Psyllidae), the Asian citrus psyllid, is a phloem-feeding, invasive species endemic to southern Asia that was first identified in the United States in Florida in 1998. Since introduction, D. citri has spread across the major citrus growing regions of the United States. This is of great concern to the citrus industry because D. citri is the primary vector of Candidatus Liberibacter asiaticus the causal agent of Haunglongbing (HLB). Haunglongbing is the most economically devastating disease of citrus causing an estimated 8.92 billion dollars lost in revenue and 4.62 billion dollars lost in gross domestic product between 2006-2007 …

Investigating Novel Approaches For The Integrated Control Of The Soilborne Strawberry Pathogens Macrophomina Phaseolina And Fusarium Oxysporum F. Sp. Fragariae, Mel Carter

Master's Theses

Macrophomina phaseolina (Mp) and Fusarium oxysporum f. sp. fragariae (Fof) are emerging soilborne pathogens causing crown rot and Fusarium wilt, respectively, in commercial strawberry production in California. Fungicides representing eight active ingredients from four different mode of action groups (FRAC groups 1, 3, 7 and 12) were evaluated for their efficacy against each pathogen in vitro and each disease in planta. Fungicide active ingredients were evaluated for their ability to inhibit mycelial growth of both pathogens in vitro. Half-strength potato dextrose agar was amended with six different concentrations (0.01, 0.1, 1.0, 5.0, 10, 50 µg …

Genetic Engineering And Sustainable Crop Disease Management: Opportunities For Case-By-Case Decision-Making, Paul Vincelli

Plant Pathology Faculty Publications

Genetic engineering (GE) offers an expanding array of strategies for enhancing disease resistance of crop plants in sustainable ways, including the potential for reduced pesticide usage. Certain GE applications involve transgenesis, in some cases creating a metabolic pathway novel to the GE crop. In other cases, only cisgenessis is employed. In yet other cases, engineered genetic changes can be so minimal as to be indistinguishable from natural mutations. Thus, GE crops vary substantially and should be evaluated for risks, benefits, and social considerations on a case-by-case basis. Deployment of GE traits should be with an eye towards long-term sustainability; several …

A Brief History Of Corn: Looking Back To Move Forward, Jon Derek Pruitt

Doctor of Plant Health Program: Dissertations and Student Research

Maize was domesticated from teosinte in Mexico some 7,000 to 10,000 years ago and quickly spread through the Americas. It has become one of the most important crops at a local and global level. Two types, Northern Flint corn and Southern Dent corns provided the basis of the genetic background of modern maize hybrids. The development of hybrids, first double-cross and later single-cross hybrids, along with a transition to high input farming provided huge yield increases, which have continued to improve with improving technology.

Increase in maize production also caused a rise in Western corn Rootworm (Diabrotica virgifera virgifera …

Genetic Analysis Of Soybean Mosaic Virus (Smv) Resistance Genes In Soybean [Glycine Max (L.) Merr.], Mariola Klepadlo

Graduate Theses and Dissertations

Soybean mosaic virus (SMV) causes the most serious viral disease in soybean worldwide. Seven SMV strains, G1 - G7, and three independent multi-allelic loci for SMV resistance, Rsv1, Rsv3, and Rsv4, have been identified. In the initial study, 299 soybean germplasm lines were genotyped for Rsv4 region, inoculated with SMV-G1 and G7 strains, and classified into several resistance groups. The Glyma.02g121400 locus was sequenced from ten soybean accessions, and alignment of the sequences revealed three SNPs displaying 100% polymorphic consistency when a soybean genotype carrying the Rsv4 gene was present. A cross between V94-5152 × Lee 68 was made to …

Screening Strawberry Clones For Anthracnose Disease Resistance Using Traditional Techniques And Molecular Markers, Melinda A. Miller-Butler

Dissertations

Cultivated strawberry, Fragaria x ananassa Duchesne, is host for many pathogens. One of the most destructive diseases of strawberry is anthracnose, whose symptoms include fruit rot, leaf and petiole lesions, crown rot, wilt, and death. Three species of Colletotrichum are considered causative agents of anthracnose diseases of strawberry. Colletotrichum acutatum causes anthracnose fruit rot, has a broad host range, and occurs in most areas of the world where strawberries are grown. Colletotrichum fragariae, the primary causal fungus of anthracnose crown rot, may infect all aboveground parts of the strawberry plant, and has restricted host and geographic ranges. Colletotrichum gloeosporioides …

Microbe-Id: An Open Source Toolbox For Microbial Genotyping And Species Identification, Javier F. Tabima, Sydney E. Everhart, Meredith M. Larsen, Alexaandra J. Weisberg, Zhian N. Kamvar, Mathew A. Tancos, Christine D. Smart, Jeff H. Chang, Niklaus J. Grünwald

Department of Plant Pathology: Faculty Publications

Development of tools to identify species, genotypes, or novel strains of invasive organisms is critical for monitoring emergence and implementing rapid response measures. Molecular markers, although critical to identifying species or genotypes, require bioinformatic tools for analysis. However, user-friendly analytical tools for fast identification are not readily available. To address this need, we created a web-based set of applications called Microbe-ID that allow for customizing a toolbox for rapid species identification and strain genotyping using any genetic markers of choice. Two components of Microbe-ID, named Sequence-ID and Genotype-ID, implement species and genotype identification, respectively. Sequence-ID allows identification of species by …

Managing Drought Stress In California Agricultural Systems, Gregory D. Brittain Jr.

Doctor of Plant Health Program: Dissertations and Student Research

California is currently facing a historic drought, and this has led many farmers in the state to severely cut back on irrigation. Optimal use of water for irrigation requires a comprehensive understanding of how plants respond physiologically to water stress (Chapter 1). By monitoring water requirements in crops and managing irrigation to meet those requirements, growers can significantly reduce water use (Chapter 2). This can be done through improving application efficiency of irrigation technology as well as increasing the water use efficiency of the crops themselves. Deficit irrigation practices can be used to manipulate the physiology of water use in …

Ecological Risks Of The Conventional Insecticide/Fungicide Seed Treatment Mixture Of Thiamethoxam And Mefenoxam In Soybean On Beneficial Insects, Carolina Camargo

Department of Entomology: Dissertations, Theses, and Student Research

The impact of neonicotinoid seed treatments on beneficial insects has been a controversial topic during the last years. While neonicotinoids are usually used as mixtures with systemic fungicides, few studies have examined the impact of the mixtures on beneficial insects. Pesticide mixtures can have synergistic, additive, or antagonistic effects on the toxicity of neonicotinoids on non-target species.

Thiamethoxam with mefenoxam is the most used neonicotinoid insecticide/fungicide mixture applied to soybean. Based on the systemic nature of thiamethoxam and mefenoxam, residues of this insecticide/fungicide mixture can be present in soybean vegetative and floral tissue with potential impacts to beneficial insects. This …

A Vision For Extension: Case Studies On Managing Extreme Weather Challenges In Corn, Anthony J. Mcmechan

Doctor of Plant Health Program: Dissertations and Student Research

Global demand for corn is projected to rise in the coming decades to meet the food and fuel requirements of an increasing human population. Technological innovations have significantly improved corn yields over the past few decades; however, corn production is continually limited by unfavorable weather conditions. Extreme weather events put pressure on producers, adjustors, and consultants to make quick management decisions to maintain the highest return on their investment. Proper management decisions require an understanding of plant response and practical ways of applying this knowledge under real world conditions.

The following document was written after completing a six-month internship at …

Root Hydraulic Conductance In Malosma Laurina Experiencing Severe Dieback In The Santa Monica Mountains, Natalie M. Aguirre 5861995, Avery Davis, Sarah Nelson

Seaver College Research And Scholarly Achievement Symposium

Malosma laurina is a dominant species in coastal chaparral ecosystems The deep root systems of M. laurina provide structural support for the steep Santa Monica Mountains and allow M. laurina to tap into the deep water table. M. laurina dieback is prevalent in coastal exposures of the SMM, presumably due to historic drought predisposing plant tissues to infection by the fungal pathogen Botryosphaeria dothidea. In ecosystems that experience annual dry periods, a high hydraulic conductance in roots is necessary to provide plants with sufficient water. A recent study has examined the effect of Botryosphaeria on the hydraulic conductance of M. …

Stenocarpella Maydis: Identification, Management, And Population Diversity, Martha P. Romero Luna

Open Access Dissertations

Diplodia ear rot (DER) has been a persistent corn disease across the Midwest, and in recent years it has become an annual problem. The objectives of this study were to i) develop a molecular assay for the identification of Stenocarpella maydis, causal agent of DER, ii) evaluate the effect of crop rotation and tillage on DER severity, iii) determine the survival period of S. maydis in corn residue at different soil depths in a corn field, and iv) identify genetic diversity among S. maydis isolates collected from the Midwestern and Southern United States. The genus Stenocarpella contains two species, S. …