Botany Commons^™

An Epigenetic Breeding System In Soybean For Increased Yield And Stability, Sunil K. Kenchanmane Raju, Mon-Ray Shao, Robersy Sanchez, Ying-Zhi Xu, Ajay Sandhu, George L. Graef, Sally A. Mackenzie

Department of Agronomy and Horticulture: Faculty Publications

Epigenetic variation has been associated with a wide range of adaptive phenotypes in plants, but there exist few direct means for exploiting this variation. RNAi suppression of the plant-specific gene, MutS HOMOLOG1 (MSH1), in multiple plant species produces a range of developmental changes accompanied by modulation of defence, phytohormone and abiotic stress response pathways along with methylome repatterning. This msh1-conditioned developmental reprogramming is retained independent of transgene segregation, giving rise to transgene-null ‘memory’ effects. An isogenic memory line crossed to wild type produces progeny families displaying increased variation in adaptive traits that respond to selection. This study …

The Effect Of Simulated Herbivory On Pea Plants (Pisum Sativum) Under Water Stress, Georgia Harrison

Conspectus Borealis

No abstract provided.

Phaeophleospora Vochysiae Savi & Glienke Sp. Nov. Isolated From Vochysia Divergens Found In The Pantanal, Brazil, Produces Bioactive Secondary Metabolites, Daiani C. Savi, Khaled A. Shaaban, Francielly M. W. Gos, Larissa V. Ponomareva, Jon S. Thorson, Chirlei Glienke, Jürgen Rohr

Pharmaceutical Sciences Faculty Publications

Microorganisms associated with plants are highly diverse and can produce a large number of secondary metabolites, with antimicrobial, anti-parasitic and cytotoxic activities. We are particularly interested in exploring endophytes from medicinal plants found in the Pantanal, a unique and widely unexplored wetland in Brazil. In a bio-prospecting study, strains LGMF1213 and LGMF1215 were isolated as endophytes from Vochysia divergens, and by morphological and molecular phylogenetic analyses were characterized as Phaeophleospora vochysiae sp. nov. The chemical assessment of this species reveals three major compounds with high biological activity, cercoscosporin (1), isocercosporin (2) and the new compound 3-(sec-butyl)-6-ethyl-4,5-dihydroxy-2-methoxy-6-methylcyclohex-2-enone (3). …

Structural And Defensive Roles Of Angiosperm Leaf Venation Network Reticulation Ecross An Andes-Amazon Elevation Gradient, Benjamin Blonder, Norma Salinas, Lisa Patrick Bentley, Alexander Shenkin, Percy Chambi-Porroa, Yolvi Valdez Tejeira, Tatiana Erika Boza Espinoza, Gregory R. Goldsmith, Lucas Enrico, Roberta Martin, Gregory P. Asner, Sandra Diaz, Brian J. Enquist, Yadvinder Malhi

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

1.The network of minor veins of angiosperm leaves may include loops (reticulation). Variation in network architecture has been hypothesized to have hydraulic and also structural and defensive functions.

2.We measured venation network trait space in eight dimensions for 136 biomass-dominant angiosperm tree species along a 3,300 m elevation gradient in southeastern Peru. We then examined the relative importance of multiple ecological, and evolutionary predictors of reticulation.

3.Variation in minor venation network reticulation was constrained to three axes. These axes described branching vs. reconnecting veins, elongated vs. compact areoles, and high vs. low density veins. Variation in the first two axes …

Inheritance Of Mesotrione Resistance In An Amaranthus Tuberculatus (Var. Rudis) Population From Nebraska, Usa, Maxwel C. Oliveira, Todd A. Gaines, Amit J. Jhala, Stevan Z. Knezevic

Department of Agronomy and Horticulture: Faculty Publications

A population of Amaranthus tuberculatus (var. rudis) evolved resistance to 4- hydroxyphenylpyruvate dioxygenase (HPPD) inhibitor herbicides (mesotrione, tembotrione, and topramezone) in Nebraska. The level of resistance was the highest to mesotrione, and the mechanism of resistance in this population is metabolism-based likely via cytochrome P450 enzymes. The increasing number of weeds resistant to herbicides warrants studies on the ecology and evolutionary factors contributing for resistance evolution, including inheritance of resistance traits. In this study, we investigated the genetic control of mesotrione resistance in an A. tuberculatus population from Nebraska, USA. Results showed that reciprocal crosses in the F1 families exhibited …

Genome-Wide Analysis Of Grain Yield Stability And Environmental Interactions In A Multiparental Soybean Population, Alencar Xavier, Diego Jarquin, Reka Howard, Vishnu Ramasubramanian, James E. Specht, George L. Graef, William D. Beavis, Brian W. Diers, Qijian Song, Perry B. Cregan, Randall L. Nelson, Rouf Mian, J. Grover Shannon, Leah K. Mchale, Dechun Wang, William Schapaugh, Aaron J. Lorenz, Shizhong Xu, William M. Muir, Katy M. Rainey

Department of Agronomy and Horticulture: Faculty Publications

Genetic improvement toward optimized and stable agronomic performance of soybean genotypes is desirable for food security. Understanding how genotypes perform in different environmental conditions helps breeders develop sustainable cultivars adapted to target regions. Complex traits of importance are known to be controlled by a large number of genomic regions with small effects whose magnitude and direction are modulated by environmental factors. Knowledge of the constraints and undesirable effects resulting from genotype by environmental interactions is a key objective in improving selection procedures in soybean breeding programs. In this study, the genetic basis of soybean grain yield responsiveness to environmental factors …

Lowering Greening Of Cookies Made From Sunflower Butter Using Acidic Ingredients And Effect On Reducing Capacity, Tryptophan And Protein Oxidation, Sihui Liang, Hanh Lan Tran, Lilian Were

Food Science Faculty Articles and Research

Lowering of greening formed from oxidized chlorogenic acid (CGA) and amino groups, and favoured at alkaline pH, was investigated using acidic ingredients (sour cream, buttermilk, yoghurt, and honey) in sunflower butter cookies. Cookies with maple syrup added were used as a positive control. Changes in greening intensity, greening reactants (total phenols, CGA, protein), antioxidant capacity, tryptophan and Schiff base fluorescence were measured. Percentage greening, pH and aw of cookies followed the same order: maple syrup> sour cream ≥ buttermilk> yoghurt> honey. pH was positively correlated with greening intensity (r=0.77) and negatively correlated with CGA (r=-0.96). Total phenolic content, antioxidant capacity, …

Overlapping Residual Herbicides For Control Of Photosystem (Ps) Ii- And 4-Hydroxyphenylpyruvate Dioxygenase (Hppd)-Inhibitor-Resistant Palmer Amaranth (Amaranthus Palmeri S. Watson) In Glyphosate-Resistant Maize, Parminder S. Chahal, Zahoor Ahmad Ganie, Amit J. Jhala

Department of Agronomy and Horticulture: Faculty Publications

A Palmer amaranth (Amaranthus palmeri S. Watson) biotype has evolved resistance to photosystem (PS) II- (atrazine) and 4-hydroxyphenylpyruvate dioxygenase (HPPD)-inhibiting herbicides (mesotrione, tembotrione, and topramezone) in maize seed production field in Nebraska, USA. The objectives of this study were to determine the effect of soil residual pre-emergence (PRE) herbicides followed by (fb) tank-mixture of residual and foliar active post-emergence (POST) herbicides on PS-II- and HPPD-inhibitor-resistant Palmer amaranth control, maize yield, and net economic returns. Field experiments were conducted in a grower’s field infested with PS II- and HPPD-inhibitor-resistant Palmer amaranth near Shickley in Fillmore County, Nebraska, USA in 2015 …

Utilizing Gis To Locate Endangered Gravel Hill Prairies Of The Wabash River Valley, Ryan W.R. Schroeder

Engagement & Service-Learning Summit

The Gravel Hill Prairies (GHP’s) of the Wabash River Valley are an endangered ecosystem in the state of Indiana and provide optimal growing conditions for a number of state endangered plants. Currently only four remnants are known to exist near Lafayette, IN, found by a previous study conducted in 1980 by Post, Bacone, and Aldrich (Proceedings of the Indiana Academy of Science, 1984, vol. 94: 457-464). These unique ecosystems have been found to occur almost exclusively on soils classified as Rodman Gravelly Loams and Strawn-Rodman complexes which occur predominantly along the outwash terraces of the Wabash River and its tributaries. …

Distribution Of A. Modesta, A. Julibrissin And M. Himalayana Gamble In Pir Lasura National Park, Sher Wali Khan, Nafeesa Qudsia Hanif, Madeeha Manzoor

Journal of Bioresource Management

Pir Lasura National Park (PLNP) in Azad Jammu and Kashmir, Pakistan is located in the Kotli Forest division and spans across an area of 13,900 acres. The list obtained through this study included 46 tree species of angiosperms, out of which only 3 species belong to the family Mimosaceae; A. modesta, A. julibrissin and M. himalayana gamble. A. modesta had 1.6 % constancy and belonged to class Ⅰ, A. julibrissin had 3.3% relative cover and belonged to class Ⅰ, whereas the relative vegetative cover of Mimosa himalayana gamble was too less to be tabulated. All the three species of the …

Distribution Of Gymnosperms In Pir Lasura National Park, Kishwar Sultana, Afsar Mian, Asad Ghufran, Sabiha Shamim

Journal of Bioresource Management

Survey carried out in June-July 2009 recorded a minimum of 159 plant species with 48 species of trees. Out of these only two species are of gymnosperms; Pinus roxburghii and Pinus wallichiana. One species of trees, Pinus roxburghii is widely distributed. It is present in all communities, and can be found in different combinations with different other species. Both of these species have ethnobotanical value and are used by local population for different purposes.

Leaf Herbivory Induces Resistance Against Florivores In Raphanus Sativus, Andrew C. Mccall, Samantha Case, Kelsy Espy, Grant Adams, Stephen J. Murphy

Student Publications

Florivory can have significant negative effects on plant fitness, driving selection for resistance traits in flowers. In particular, herbivory to leaves may induce resistance in flowers because herbivores on leaves often become florivores on flowers as plant ontogeny proceeds. The literature on inducible resistance in floral tissues is limited, so we used a series of experiments to determine whether prior leaf damage by Spodoptera exigua (Hübner) caterpillars affected florivore preference and performance on wild radish (Raphanus sativus L.). We found that Spodoptera exigua larvae preferred petals from control plants versus petals from plants exposed to prior leaf damage, and …

Understanding Soil Moisture Levels On Soledad Ridge, Santa Rosa Island, California During The Summer Months, Dulce M. Lopez, Stephen Bednar, Kathryn Mceachern

STAR Program Research Presentations

Santa Rosa Island located off the coast of Santa Barbara County was grazed by non-native ungulates leaving the island stripped of vegetation topsoil layer. With the removal of ungulates, the National Park Service began restoring the Cloud Forest on Soledad Ridge. Soledad Ridge is said to have once been covered by large stands of island oaks (Quercus tometella) and other endemic and native plants. The unique leaf and structural morphology of such vegetation collects water from wind derived fog which serves as the main source of water for this unique ecosystem. In an effort to jump-start ecosystem vegetation …

Arabidopsis Mate45 Antagonizes Local Abscisic Acid Signaling To Mediate Development And Abiotic Stress Responses, Nikola Kovinich, Yiqun Wang, Janet Adegboye, Alexandra A. Chanoca, Marisa S. Otegui, Paige Durkin, Erich Grotewold

Faculty & Staff Scholarship

Anthocyanins provide ideal visual markers for the identification of mutations that disrupt molecular responses to abiotic stress. We screened Arabidopsis mutants of ABC (ATP‐Binding Cassette) and MATE (Multidrug And Toxic compound Extrusion) transporter genes under nutritional stress and identified four genes (ABCG25, ABCG9, ABCG5, and MATE45) required for normal anthocyanin pigmentation. ABCG25 was previously demonstrated to encode a vascular‐localized cellular expor- ter of abscisic acid (ABA). Our results show that MATE45 encodes an aerial meris- tem‐ and a vascular‐localized transporter associated with the trans‐Golgi, and that it plays an important role in controlling the levels and distribution of ABA in …

Chitosan Biopolymer Promotes Yield And Stimulates Accumulation Of Antioxidants In Strawberry Fruit, Mosaddiqur Rahman, Julakha Akter Mukta, Abdullah As Sabir, Dipall Rani Gupta, Mohammed Mohi-Ud-Din, Mirza Hasanuzzaman, Md. Giashuddin Miah, Mahfuzur Rahman, Md Tofazzai Islam

Faculty & Staff Scholarship

Strawberry is a well-known source of natural antioxidants with excellent free radical scav- enging capacity. This study determined the effects of chitosan application in field condition on plant growth, fruit yield and antioxidant activities in strawberry fruit. Foliar applications of chitosan on strawberry significantly increased plant growth and fruit yield (up to 42% higher) compared to untreated control. Increased fruit yield was attributed to higher plant growth, individual fruit weight and total fruit weight/plant due to the chitosan application. Surprisingly, the fruit from plants sprayed with chitosan also had significantly higher contents (up to 2.6- fold) of carotenoids, anthocyanins, flavonoids …

Repeated Translocation Of A Gene Cassette Drives Sex-Chromosome Turnover In Strawberries, Jacob A. Tennessen, Na Wei, Shannon C.K. Straub, Rajanikanth Govindarajulu, Aaron Liston, Tia-Lynn Ashman

Faculty & Staff Scholarship

Turnovers of sex-determining systems represent important diversifying forces across eukary- otes. Shifts in sex chromosomes—but conservation of the master sex-determining genes— characterize distantly related animal lineages. Yet in plants, in which separate sexes have evolved repeatedly and sex chromosomes are typically homomorphic, we do not know whether such translocations drive sex-chromosome turnovers within closely related taxo- nomic groups. This phenomenon can only be demonstrated by identifying sex-associated nucleotide sequences, still largely unknown in plants. The wild North American octoploid strawberries (Fragaria) exhibit separate sexes (dioecy) with homomorphic, female heteroga- metic (ZW) inheritance, yet sex maps to three different chromosomes in …

Bioinformatic Workflows For Generating Complete Plastid Genome Sequences—An Example From Cabomba (Cabombaceae) In The Context Of The Phylogenomic Analysis Of The Water-Lily Clade, Michael Gruenstaeudl, Nico Gerschler, Thomas Borsch

Biological Sciences Faculty Publications

The sequencing and comparison of plastid genomes are becoming a standard method in plant genomics, and many researchers are using this approach to infer plant phylogenetic relationships. Due to the widespread availability of next-generation sequencing, plastid genome sequences are being generated at breakneck pace. This trend towards massive sequencing of plastid genomes highlights the need for standardized bioinformatic workflows. In particular, documentation and dissemination of the details of genome assembly, annotation, alignment and phylogenetic tree inference are needed, as these processes are highly sensitive to the choice of software and the precise settings used. Here, we present the procedure and …

The Role Of Red Leaf Coloration In Prey Capture For Pinguicula Planifolia, Jenna Annis, Janice Coons, Charles Helm, Brenda Molano-Flores

Faculty Research & Creative Activity

Anthocyanins in the leaves of carnivorous plants are suggested to play a role inprey capture. In this study, we investigated the role of red leaf coloration (an indicator of anthocyanins)on prey capture using Pinguicula planifolia (Chapman’s Butterwort). Overall,red leaves had less prey (i.e., Collembola) than green leaves, suggesting that red colorationdoes not enhance prey capture for Chapman’s Butterwort. However, the frequent presenceof Collembola on leaves suggests that this plant species could be relying on other cues toattract prey (e.g., olfactory cues).

Phytobiome And Transcriptional Adaptation Of Populus Deltoides To Acute Progressive Drought And Cyclic Drought, Benjamin Garcia, Jessy Labbé, Piet Jones, Piet Jones, Paul Abraham, Ian Hodge, Ian Hodge, Sharlee Climer, Sara Jawdy, Lee Gunter, Gerald Tuskan, Xiaohan Yang, Timothy Tschaplinski, Daniel Jacobson, Daniel Jacobson

Computer Science Faculty Works

Plant drought stress causes systematic changes to photosynthesis, metabolism, growth, and potentially the phytobiome. Additionally, drought affects plants in both a species-specific and water-deficit-driven manner, causing the response to drought to be dependent both on how drought is being experienced and on any adaptation to prior drought exposure. Thus, understanding the effect of drought on plants requires assessing drought response in multiple conditions, such as progressive acute drought and recurrent cyclic drought, and at different levels of severity. In this study, we have utilized RNA sequencing to identify changes to the plant transcriptome and the phytobiome during both acute progressive …

Reviewers Of Manuscripts, Volume 36

Aliso: A Journal of Systematic and Floristic Botany

No abstract provided.