Botany Commons^™

Sfa Gardens Newsletter, Spring 2011, Sfa Gardens, Stephen F. Austin State University

SFA Gardens Newsletters

No abstract provided.

Review Of Pieces Of The Plains: Memories And Predictions From The Heart Of America. By John Janovy, Jr., Mark Hammer

Great Plains Research: A Journal of Natural and Social Sciences (through 2013)

John Janovy, Jr., author, parasitologist, and Varner Professor of Biological Sciences at the University ofNebraska- Lincoln, describes his book as "sort of a memoir, but one in which experience is the main character, instead of the writer." Janovy divides this experience into three sections describing his past, his present, and humanity's future.

Janovy the teacher is never far from each chapter's storyline. Describing his central theme as "education in the broadest sense, a constant learning derived from exploration of things and places," he sets out in the book's pages to engage in a discussion of big ideas just as he …

A First Insight Into Population Structure And Linkage Disequilibrium In The U.S. Peanut Minicore Collection, Vikas Belamkar, Michael Gomez Selvaraj, Jamie L. Ayers, Paxton R. Payton, Naveen Puppala, Mark D. Burow

Department of Agronomy and Horticulture: Faculty Publications

Knowledge of genetic diversity, population structure, and degree of linkage disequilibrium (LD) in target association mapping populations is of great importance and is a prerequisite for LD-based mapping. In the present study, 96 genotypes comprising 92 accessions of the US peanut minicore collection, a component line of the tetraploid variety Florunner, diploid progenitors A. duranensis (AA) and A. ipaënsis (BB), and synthetic amphidiploid accession TxAG-6 were investigated with 392 simple sequence repeat (SSR) marker bands amplified using 32 highly-polymorphic SSR primer pairs. Both distance- and model-based (Bayesian) cluster analysis revealed the presence of structured diversity. In general, the wild-species accessions …

Genes Identified By Visible Mutant Phenotypes Show Increased Bias Toward One Of Two Subgenomes Of Maize, James C. Schnable, Michael Freeling

Department of Agronomy and Horticulture: Faculty Publications

Not all genes are created equal. Despite being supported by sequence conservation and expression data, knockout homozygotes of many genes show no visible effects, at least under laboratory conditions. We have identified a set of maize (Zea mays L.) genes which have been the subject of a disproportionate share of publications recorded at MaizeGDB. We manually anchored these ‘‘classical’’ maize genes to gene models in the B73 reference genome, and identified syntenic orthologs in other grass genomes. In addition to proofing the most recent version 2 maize gene models, we show that a subset of these genes, those that …

Dose–Sensitivity, Conserved Non-Coding Sequences, And Duplicate Gene Retention Through Multiple Tetraploidies In The Grasses, James C. Schnable, Brent S. Pedersen, Sabarinath Subramaniam, Michael Freeling

Department of Agronomy and Horticulture: Faculty Publications

Whole genome duplications, or tetraploidies, are an important source of increased gene content. Following whole genome duplication, duplicate copies of many genes are lost from the genome. This loss of genes is biased both in the classes of genes deleted and the subgenome from which they are lost. Many or all classes are genes preferentially retained as duplicate copies are engaged in dose sensitive protein–protein interactions, such that deletion of any one duplicate upsets the status quo of subunit concentrations, and presumably lowers fitness as a result. Transcription factors are also preferentially retained following every whole genome duplications studied. This …

Phylogenetic Evaluation Of Series Delimitations In Section Palmata (Acer, Aceroideae, Sapindaceae) Based On Sequences Of Nuclear And Chloroplast Genes, Jianhua Li

Aliso: A Journal of Systematic and Floristic Botany

Acer section Palmata (Japanese maples) is the largest section within the genus; however, series delimitations within section Palmata have not been evaluated in a phylogenetic context. Both maximum parsimony and maximum likelihood analyses of DNA sequence data of nuclear rDNA ITS and chloroplast genes (ndhF, trnL-trnF, and psbA-trnH) from 23 species of Acer section Palmata show that traditional series do not form individual clades. Results from this study support the most recent taxonomic treatment of Acer that does not recognize any series in section Palmata. Nuclear and chloroplast phylogenies are significantly …

Wood Anatomy Of Family Salvadoraceae From The Indian Subcontinent With Special Reference To The Ultrastructure Of The Vessel Wall, Vishakha Saxena, Sangeeta Gupta

Aliso: A Journal of Systematic and Floristic Botany

The present study describes the wood microstructure of Azima tetracantha, Salvadora oleoides, and S. persica, the members of family Salvadoraceae represented in the Indian Subcontinent. An identification key based on wood anatomical features has been developed for the separation of the species. SEM studies revealed the presence of vesturing in intervessel pits of Salvadora.

Cover Page

Aliso: A Journal of Systematic and Floristic Botany

No abstract provided.

Sinker Structure Of Phoradendron Californicum (Viscaceae) Confounds Its Presumed Close Relationship To Other Acataphyllous Species, Rudolf Schmid, Clyde L. Calvin, Carol A. Wilson

Aliso: A Journal of Systematic and Floristic Botany

Phoradendron is the largest genus of New World mistletoes, with about 250 species in two subgenera, Boreales and Aequatoriales, corresponding, respectively, to northern acataphyllous and southern cataphyllous groups. The typically acataphyllous P. californicum of western North America is controversial because recent phylogenetic work has nested it in the southern cataphyllous clade. Seedling establishment, stem anatomy, and endophytic system structure of this species were studied. Seedling haustorial holdfasts have gland cavities, structures considered absent in the Viscaceae clade of Santalales. The stem epidermis has a thick cuticle, deeply sunken stomata, and branched multicellular trichomes. The stem has an outer cortex …

Ponderosa Pine Revisited, J. Robert Haller, Nancy J. Vivrette

Aliso: A Journal of Systematic and Floristic Botany

We here recognize a new variety, Pinus ponderosa var. pacifica, in the Pacific portion of the species' distribution and present a new combination for Washoe pine as a variety, Pinus ponderosa var. washoensis. In this treatment, we reject the neotype of Pinus ponderosa selected by Lauria and designate instead the branch collected by David Douglas with mistletoe (Arceuthobium campylopodum) as lectotype for Pinus ponderosa. Table 1 compares the distinguishing characters of the North Plateau (typical) variety, the Pacific variety, and the Washoe variety of Pinus ponderosa with a closely related species, Pinus jeffreyi. Figure …

Nomenclatural Changes For Some Grasses In California. Ii., James P. Smith Jr., J. Travis Columbus

Aliso: A Journal of Systematic and Floristic Botany

Two additional nomenclatural changes are required for Poaceae treatments that will appear in the second edition of The Jepson Manual: Higher Plants of California. They are Elymus x gouldii and Festuca temulenta. The former corrects a violation of the rule in the International Code of Botanical Nomenclature involving the naming of hybrids, and the latter involves a widely occurring non-native grass in California traditionally assigned to Lolium.

Plants Of The Colonet Region, Baja California, Mexico, And A Vegetation Map Of Colonet Mesa, Alan B. Harper, Sula Vanderplank, Mark Dodero, Sergio Mata, Jorge Ochoa

Aliso: A Journal of Systematic and Floristic Botany

The Colonet region is located at the southern end of the California Floristic Province, in an area known to have the highest plant diversity in Baja California. A preliminary list of vouchered specimens is developed for the area, and a vegetation map for Colonet Mesa is presented. The Colonet region has at least 435 vascular plant taxa, of which 383 are native to Baja California, and 52 are endemic or nearly endemic. This list includes five local endemic taxa known only from the Colonet region, 18 taxa on the California Native Plant Society List 1B of taxa that are "rare, …

Distribution And Regional Ecology Of Californian Palm Oases Interpreted From Google Earth Images, Richard A. Minnich, Ernesto Franco-Vizcaíno, Mario Salazar-Ceseña

Aliso: A Journal of Systematic and Floristic Botany

The native fan palms of the Baja California peninsula (Mexico) and neighboring southern California (USA) comprise two species each in Washingtonia and Brahea. While these are among the most familiar ornamental palms in the world, many features of their taxonomy, distribution, and environmental relationships remain unresolved. We utilized Google Earth Digital Globe imagery (and limited surveys by air and land) to develop the first map detailing the geographic distribution of palm populations in the Peninsular Range Province (PRP) and used these data to formulate new hypotheses on their biotic and abiotic relationships. We inventoried 15,216 populations covering an area …

Traversing Swanton Road, 4th Ed., James A. West

Academic, Government & Associated Organizational Research Resources

Situated at the northwest end of Santa Cruz County and occupying circa 30 square miles of sharply contrasted terrain, the Scott Creek Watershed concentrates within its geomorphological boundaries, at least 10-12% of California's flora, both native and introduced. Paradoxically, the use/abuse that the watershed has sustained over the past 140+ years, has not necessarily diminished the biodiversity and perhaps parallels the naturally disruptive but biologically energizing processes (fire, flooding, landslides and erosion), which have also been historically documented for the area for +60 years. This is an early edition of an extensive document by James A. West. Please visit the …

Hybrid Oaks: Full Of Vexation And Wonder, W. John Hayden

Biology Faculty Publications

Distinguishing different species of oak in the forests of eastern North America can be challenging. For one thing, there are simply a lot of different species to sort out. A recent reference (Stein et al. 2003), describes 50 species in the genus Quercusoccurring naturally east of the 100th meridian, and 90 species are distinguished for all of North America north of Mexico (Nixon 1997). With so many species to parse, confident identification requires careful study of leaves, stem and leaf hairiness, and fully mature acorns with their caps. But care is not always enough, because in addition to the …

Wayne E. Sabbe Arkansas Soil Fertility Studies 2010, Nathan A. Slaton

Arkansas Agricultural Experiment Station Research Series

Rapid technological changes in crop management and production require that the research efforts be presented in an expeditious manner. The contributions of soil fertility and fertilizers are major production factors in all Arkansas crops.

Traversing Swanton Road, 3rd Ed., James A. West

Academic, Government & Associated Organizational Research Resources

Situated at the northwest end of Santa Cruz County and occupying circa 30 square miles of sharply contrasted terrain, the Scott Creek Watershed concentrates within its geomorphological boundaries, at least 10-12% of California's flora, both native and introduced. Paradoxically, the use/abuse that the watershed has sustained over the past 140+ years, has not necessarily diminished the biodiversity and perhaps parallels the naturally disruptive but biologically energizing processes (fire, flooding, landslides and erosion), which have also been historically documented for the area for +60 years. This is an early edition of an extensive document by James A. West. Please visit the …

National Center For Pharmaceutical Crops, Wei Yuan, Shiyou Li, Zushang Su, Ping Wang

NCPC Presentations

The mission of the National Center for Pharmaceutical Crops is to develop crops for the production of pharmaceutical and other bioactive compounds. The NCPC, located in the Arthur Temple College of Forestry and Agriculture, is the only one of its kind in the U.S. and it seeks to improve human health, revitalize rural economies and enhance U.S. security in strategic pharmaceuticals. This poster provides a background to the department, its functions and activities and notable achievements.

Seedlings 2011, Sean M. Goins, Joseph Braner, Amy L. Myers, Charlie Jackson, Julia I. Chapman, Ryan W. Mcewan

Data Files: Drew Woods Permanent Plots

Seedling data (woody species up to 50 centimeters in height) collected in 2011 at Drew Woods State Nature Preserve in Darke County, OH. Data key is provided in a supplemental file.

Angiosperm Phylogeny: 17 Genes, 640 Taxa, Douglas E. Soltis, Steven A. Smith, Nico Cellinese, Kenneth J. Wurdack, David C. Tank, Samuel F. Brockington, Nancy F. Refulio-Rodriguez, Jay B. Walker, Michael J. Moore, Barbara S. Carlsward, Charles D. Bell, Maribeth Latvis, Sunny Crawley, Chelsea Black, Diaga Diouf, Zhenxiang Xi, Catherine A. Rushworth, Matthew A. Gitzendanner, Kenneth J. Sytsma, Yin-Long Qiu, Khidir W. Hilu, Charles C. Davis, Michael J. Sanderson, Reed S. Beaman, Richard G. Olmstead, Walter S. Judd, Michael S. Donoghue, Pamela S. Soltis

Faculty Research & Creative Activity

• Premise of the study : Recent analyses employing up to fi ve genes have provided numerous insights into angiosperm phylogeny, but many relationships have remained unresolved or poorly supported. In the hope of improving our understanding of angiosperm phylogeny, we expanded sampling of taxa and genes beyond previous analyses.

• Methods : We conducted two primary analyses based on 640 species representing 330 families. The fi rst included 25 260 aligned base pairs (bp) from 17 genes (representing all three plant genomes, i.e., nucleus, plastid, and mitochondrion). The second included 19 846 aligned bp from 13 genes (representing only …