Botany Commons^™

Identification Of Carrying Alien Dna Fragments In Solanum Melongena X Solanum Incanum Interspecific Progeny By Using Cosii Marker, Görkem Sülü, İlknur Polat, Hati̇ce Fi̇li̇z Boyaci, Ahmet Naci̇ Onus

Turkish Journal of Botany

Cultivated eggplant (Solanum melongena L.) is produced in many countries with temperate and tropical climates and has great economic importance. In recent years, resistance to biotic and abiotic stress conditions in addition to increasing yield and quality has gained importance in plant breeding including eggplant breeding. Therefore, the wild relative S. incanum is an important parent in breeding studies as it provides resistance to some important biotic and abiotic stresses for eggplant. It is possible to obtain a fully fertile hybrid between the two species, as well as to establish F2 lines. However, it is a mystery whether there is …

A New Fossil Wood Species Of Ziziphus From The Middle Miocene Of Türkiye And Its Palaeoenvironmental Evaluation, Ünal Akkemi̇k, Özlem Toprak

Turkish Journal of Botany

The purpose of this study is to describe a new fossil wood from the Middle Miocene of South Anatolia (Mersin) and to identify it and evaluate its palaeoenvironmental implications. Thin sections of transverse, tangential, and radial surfaces were examined and described using the terminology of the International Association of Wood Anatomists. The wood was determined to have characteristics of Ziziphus (Rhamnaceae). It is the first fossil wood of Ziziphus and is described as Ziziphoxylon sayaz Akkemik sp. nov. It is from the Middle Miocene Climate Optimum (MMCO), which is a relatively warm interval in the Miocene. Indistinct annual growth ring …

Dorycnium Vuralii (Fabaceae), A New Species From Türkiye, Bilal Şahi̇n, Seher Karaman, Mevlüde Alev Ateş, Zeki Aytaç

Turkish Journal of Botany

The present study describes a new species Dorycnium vuralii (Fabaceae) from Çankırı, Türkiye. The new species is compared morphologically to the taxa of sect. Bonjeanea and sect. Dorycnium along with pollen micromorphology, leaflet, and seed micromorphology. The geographical distribution of Dorycnium vuralii is mapped. The phylogenetic relationships between the new species and other closely related species in the genus are inferred based on DNA data from both cpDNA and nrDNA (rbcL1&ITS). Although phylogenetic implications are different in the two DNA barcoding regions, D. vuralii is shown to be a new species in both molecular data. The new species is assessed …

Isolation And Assessment Of Halophilic Rhizobacteria Plant Growth-Promoting Traits For Alleviating Salt Stress In Wheat, Alev Sezen, Ömer Faruk Algur, Ferruh Aşçi, Arzu Ünal

Turkish Journal of Botany

In this study, 22 halophilic bacteria were isolated from plants collected together with rhizosphere soil from habitats with high salt content in and around Erzurum. Various plant growth-promoting (PGP) properties of these isolates (nitrogen fixing, phosphate solubilizing, ACC deaminase, and IAA and siderephore production) were determined. Bacteria positive for PGP properties and various combinations with these bacteria were subjected to pot experiments in saline medium (greenhouse conditions) and their effects on growth parameters (root and stem length, fresh and dry weight, protein, and chlorophyll and carotenoid content) of wheat plants were determined. As a result of the research, the isolates …

A New Permineralized Corypha-Type Coryphoid Palm Stem From K-Pg Of India: Anatomy, Systematics, Saprophytic Fungi, And Paleoecology, Ashif Ali, Kaustav Roy, Biswajit Mukherjee, Subir Bera, Mahasin Khan

Turkish Journal of Botany

Palms are known to be an important and diverse angiosperm component in the Deccan Intertrappean beds of Central India. However, the report of fossilized palm stems inhibiting saprophytic fungal remains is empty in the field of paleobotany. Here, we document for the first time the occurrence of fungal remains in a petrified palm stem collected from the latest Maastrichtian (Late Cretaceous)-earliest Danian (early Paleocene) sediments of the Deccan Intertrappean beds of Madhya Pradesh, Central India. The anatomical features of the fossil stem are characterized by the presence of Corypha-type general stem pattern (progressive decrease of fibrous parts of fibrovascular bundles, …

Leveraging Digital Agriculture For On-Farm Testing Of Technologies, Laila A. Puntel, Laura J. Thompson, Taro Mieno

Department of Agronomy and Horticulture: Faculty Publications

The Precision Nitrogen Project (PNP) worked with more than 80 corn and winter wheat producers to inexpensively design and implement randomized, replicated field strip trials on whole commercial farm fields, and to provide site-specific testing of current nitrogen (N) technologies. This article proposes a conceptual framework and detailed procedure to select the N technology to be tested; design and implement field trials; generate, process, and manage field trial data; and automatically analyze, report, and share benefits from precision N technology. The selection of the N technology was farmer-driven to ensure a good fit and to increase the likelihood of future …

Modelling The "Bottom-Up" Development Pattern Of Tar Spot Disease In Corn, Brenden Lane, Joaquín Guillermo Ramírez-Gil, Carlos Góngora-Canul, Mariela Sofia Fernandez Campos, Andres Cruz-Sancan, Fidel E. Jiménez-Beitia, Alex G. Acosta-Guatemal, Wily Sic, C. D. Cruz

Graduate Industrial Research Symposium

In 2015, the corn-infecting pathogen Phyllachora maydis (causal agent of tar spot disease) was reported for the first time in the United States. The disease has since spread across the US, causing major yield losses. In 2021 alone, 5.88 million metric tons (231.3 million bushels) of US corn yield were lost to this disease, costing an estimated US$1.25 billion. Though fungicides can protect against these agroeconomic losses, application timing can be difficult to optimize because our understanding of tar spot dynamics is still evolving. The current view is that tar spot typically develops bottom-up through a repeating infection cycle. Because …

Automated Tree Mortality Detection Using Ubiquitously Available Public Data, Michael T. Huggins

Master's Theses

Understanding the dynamic interplay between fire severity, topography, and tree mortality, is crucial for predicting future forest dynamics and enhancing resilience against climate change-induced wildfire regimes. This thesis develops a multi-sensor approach for automated estimation of tree mortality, then applies it to examine trends in tree mortality over a six-year period across a fire affected study site in the Trinity River basin in Northern California. The Random Forest model uses publicly available USGS 3D Elevation Program Lidar (3DEP) and NAIP imagery as inputs and is likely to be easily adaptable to other landscapes. The model had a Receiver Operating Characteristic …

Variation In Leaf Chlorophyll Concentration In Response To Nitrogen Application Across Maize Hybrids In Contrasting Environments, Kyle M. Linders, Dipak K. Santra, James C. Schnable, Brandi Sigmon

Department of Agronomy and Horticulture: Faculty Publications

Leaf chlorophyll concentration was measured for 84 publicly available maize hybrids grown under three nitrogen fertilizer treatments in two contrasting environments in Nebraska. The effect of nitrogen treatment on chlorophyll response was found to be significant (p < 0.05) for both locations. In Scottsbluff, chlorophyll concentrations increased significantly with increasing nitrogen rate, while no significant difference was found between medium and high nitrogen in Lincoln. Within equivalent nitrogen treatments, chlorophyll was more abundant in Lincoln than Scottsbluff for nearly every hybrid. Hybrid response was not consistent between environments, with approximately 11% of variance explained by genotype by environment interaction.

Arkansas Cotton Variety Tests 2023, F. Bourland, J. Gann, B. Milano, B. Guest, L. Martin, J. Mcalee

Arkansas Agricultural Experiment Station Research Series

The primary goal of the Arkansas Cotton Variety Tests is to provide unbiased data regarding the agronomic performance of cotton varieties and advanced breeding lines in the major cotton-growing areas of Arkansas. This information helps seed companies establish marketing strategies and assists producers in choosing varieties to plant. These annual evaluations will then facilitate the inclusion of new, improved genetic material in Arkansas cotton production. Adaptation of varieties is determined by evaluating the lines at five University of Arkansas System Division of Agriculture research sites (Manila, Keiser, Judd Hill, Marianna, and Rohwer). The 2023 tests at Keiser were adversely affected …

Prioritizing Indigenous Participation And Compensation In Research, Amanda Sabin

Journal of Critical Global Issues

Throughout history, the dynamic between colonial entities and indigenous groups has been characterized by exploitation and power imbalance. Indigenous knowledge has the potential to positively impact the world, through medicinal breakthroughs, radical approaches to sustainability, cultural heritage, systems of learning and adaptation, and more. Particularly in the context of research, fields like anthropology, botany and pharmacology serve to benefit from indigenous knowledge, but these interactions cannot continue to be based on extraction at the cost of indigenous communities. This work will discuss the future of relationships between researchers and indigenous communities; how this power dynamic must be transformed into an …

Calibration Of Hybrid-Maize Model For Simulation Of Soil Moisture And Yield In Production Corn Fields, Anthony A. Amori, Olufemi P. Abimbola, Trenton E. Franz, Daran Rudnick, Javed Iqbal, Haishun Yang

Department of Agronomy and Horticulture: Faculty Publications

Model calibration is essential for acceptable model performance and applications. The Hybrid-Maize model, developed at the University of Nebraska-Lincoln, is a process-based crop simulation model that simulates maize growth as a function of crop and field management and environmental conditions. In this study, we calibrated and validated the Hybrid-Maize model using soil moisture and yield data from eight commercial production fields in two years. We used a new method for the calibration and multi-parameter optimization (MPO) based on kriging with modified criteria for selecting the parameter combinations. The soil moisture-related parameter combination (SM-PC3) improved simulations of soil water dynamics, but …

Toward A Coordinated Understanding Of Hydro-Biogeochemical Root Functions In Tropical Forests For Application In Vegetation Models, Daniela F. Cusack, Bradley Christoffersen, Chris M. Smith-Martin, Kelly M. Andersen, Amanda L. Cordeiro, Katrin Fleischer, S. Joseph Wright, Nathaly R. Guerrero-Ramírez, Laynara F. Lugli, Lindsay A. Mcculloch, Mareli Sanchez-Julia, Sarah A. Batterman, Caroline Dallstream, Claire Fortunel, Laura Toro, Lucia Fuchslueger, Michelle Y. Wong, Daniela Yaffar, Joshua B. Fisher, Marie Arnaud, Lee H. Dietterich, Shalom D. Addo-Danso, Oscar J. Valverde-Barrantes, Monique Weemstra, Jing Cheng Ng, Richard J. Norby

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Tropical forest root characteristics and resource acquisition strategies are underrepresented in vegetation and global models, hampering the prediction of forest–climate feedbacks for these carbon-rich ecosystems. Lowland tropical forests often have globally unique combinations of high taxonomic and functional biodiversity, rainfall seasonality, and strongly weathered infertile soils, giving rise to distinct patterns in root traits and functions compared with higher latitude ecosystems. We provide a roadmap for integrating recent advances in our understanding of tropical forest belowground function into vegetation models, focusing on water and nutrient acquisition. We offer comparisons of recent advances in empirical and model understanding of root characteristics …

Applicability Of Using Bio-Receptive Concrete For Building Facades In Egypt, Gina Roupheil

Theses and Dissertations

The significant increase in carbon dioxide emissions caused by the construction industry is detrimental to our planet. This is rapidly increasing with the urbanization of cities that is gradually taking its toll on the available green spaces, which help in balancing such emissions. Recently, researchers have been trying to make use of bio-receptivity to create biomaterial systems that could be spread on building envelopes and support the growth of small plant species and microorganisms to establish on. Out of those materials, comes the concrete as a promising material for bio-colonization.

Within this context, this study aims at investigating the applicability …

U.S. Cereal Rye Winter Cover Crop Growth Database, Alexandra M. Huddell, Resham Thapa, Guillermo S. Marcillo, Lori J. Abendroth, Victoria J. Ackroyd, Shalamar D. Armstrong, Gautam Asmita, Muthukumar V. Bagavathiannan, Kipling S. Balkcom, Andrea Basche, Shawn Beam, Kevin Bradley, Lucas Pecci Canisares, Heather Darby, Adam S. Davis, Pratap Devkota, Warren A. Dick, Jeffery A. Evans, Wesley J. Everman, Tauana Ferreira De A Lmeida, Michael L. Flessner, Lisa M. Fultz, Stefan Gailans, Masoud Hashemi, Joseph Haymaker, Matthew J. Helmers, Nicholas Jordan, Thomas C. Kaspar, Quirine M. Ketterings, Eileen Kladivko, Alexandra Kravchenko, Eugene P. Law, Lauren Lazaro, Ramon G. Leon, Jeffrey Liebert, John Lindquist, Kristen Loria, Jodie M. Mcvane, Jarrod O. Miller, Michael J. Mulvaney, Nsalambi V. Nkongolo, Jason K. Norsworthy, Binaya Parajuli, Christopher Pelzer, Cara Peterson, Hanna Poffenbarger, Pratima Poudel, Mark S. Reiter, Matt Ruark, Matthew R. Ryan, Spencer Samuelson, John E. Sawyer, Sarah Seehaver, Lovreet S. Shergill, Yogendra Raj Upadhyaya, Mark Vangessel, Ashley L. Waggoner, John M. Wallace, Samantha Wells, Charles White, Bethany Wolters, Alex Woodley, Rongzhong Ye, Eric Youngerman, Brian A. Needelman, Steven B. Mirsky

Department of Agronomy and Horticulture: Faculty Publications

Winter cover crop performance metrics (i.e., vegetative biomass quantity and quality) affect ecosystem services provisions, but they vary widely due to differences in agronomic practices, soil properties, and climate. Cereal rye (Secale cereale) is the most common winter cover crop in the United States due to its winter hardiness, low seed cost, and high biomass production. We compiled data on cereal rye winter cover crop performance metrics, agronomic practices, and soil properties across the eastern half of the United States. The dataset includes a total of 5,695 cereal rye biomass observations across 208 site-years between 2001–2022 and encompasses …

Effects Of Hemiparasites In Grassland Restorations Are Not Universal, Anna Marie Scheidel, Victoria Borowicz

Faculty Publications – Biological Sciences

Root hemiparasites infiltrate the vascular tissue of host roots to acquire water and nutrients, which often reduces host growth. Hemiparasites are postulated to be keystone species in grassland communities if they suppress dominant species and increase plant community biodiversity, and ecosystem engineers if they increase nutrient accessibility for surrounding species. We examined keystone effects by evaluating species richness and evenness in 1 m2 plots in a recent prairie restoration where Castilleja sessiliflora was naturally present or absent, and in a longer-established prairie restoration with or without Pedicularis canadensis. We examined ecosystem engineer effects by determining nitrate and phosphate concentrations …

Using Leaf Spectra To Elucidate The Taxonomy And Ecology Of Living And Dried Plants, Natalia L. Quinteros Casaverde

Dissertations, Theses, and Capstone Projects

Identifying plants and understanding of changes in plant communities are crucial to the conservation and management of nature. The shortwave spectral reflectance of leaves is a promising tool for rapidly identifying species at different taxonomic ranks and predicting important plant functional traits. However, the spectral reflectance of leaves changes in response to biotic and abiotic conditions.

The aim of this dissertation is to investigate the potential of shortwave spectral reflectance to investigate (Chapter 1) how its variation affects the accuracy of methods used to predict plant taxonomies and what environmental factors most influence biophysically predicted traits, (Chapter 2) what are …

Intensifying Rice Production To Reduce Imports And Land Conversion In Africa, Shen Yuan, Kazuki Saito, Pepijn A.J. Van Oort, Martin K. Van Ittersum, Shaobing Peng, Patricio Grassini

Department of Agronomy and Horticulture: Faculty Publications

Africa produces around 60% of the rice the continent consumes, relying heavily on rice imports to fulfill the rest of the domestic demand.Over the past 10 years, the rice-agricultural area increased nearly 40%, while average yield remained stagnant. Here we used a process-based crop simulation modelling approach combined with local weather, soil, and management datasets to evaluate the potential to increase rice production on existing cropland area in Africa and assess cropland expansion and rice imports by year 2050 for different scenarios of yield intensification. We find that Africa can avoid further increases in rice imports, and even reduce them, …

Filling The Agronomic Data Gap Through A Minimum Data Collection Approach, Fatima A. Tenorio, Juan I. Rattalino Edreira, Juan Pablo Monzon, Fernando Aramburu-Merlos, Achim Dobermann, Armelle Gruere, Juan Martin Brihet, Sofia Gayo, Shawn Conley, Spyridon Mourtzinis, Nester Mashingaidze, Alex Sananka, Stephen Aston, Jonathan J. Ojeda, Patricio Grassini

Department of Agronomy and Horticulture: Faculty Publications

Context: Agronomic data such as applied inputs, management practices, and crop yields are needed for assessing productivity, nutrient balances, resource use efficiency, as well as other aspects of environmental and economic performance of cropping systems. In many instances, however, these data are only available at a coarse level of aggregation or simply do not exist.

Objectives: Here we developed an approach that identifies sites for agronomic data collection for a given crop and country, seeking a balance between minimizing data collection efforts and proper representation of the main crop producing areas.

Methods: The developed approach followed a …

High Target Homology Does Not Guarantee Inhibition: Aminothiazoles Emerge As Inhibitors Of Plasmodium Falciparum, Sandra Johannsen, Robin M. Gierse, Arne KrüGer, Rachel L. Edwards, Vittoria Nanna, Anna Fontana, Di Zhu, Tiziana Masini, Lais Pessanha De Carvalho, Mael Poizat, Bart Kieftenbelt, Dana M. Hodge, Sophie University Of Nebraska-Lincoln,, Daan Bunt, Antoine Lacour, Atanaz Shams, Kamila Anna Meissner, Edmarcia Elisa De Souza, Melloney Dröge, Bernard Van Vliet, Jack Den Hartog, Michael C. Hutter, Jana Held, Audrey R. Odom John, Carsten Wrenger, Anna K.H. Hirsch

Department of Agronomy and Horticulture: Faculty Publications

In this study, we identified three novel compound classes with potent activity against Plasmodium falciparum, the most dangerous human malarial parasite. Resistance of this pathogen to known drugs is increasing, and compounds with different modes of action are urgently needed. One promising drug target is the enzyme 1-deoxy-D-xylulose-5- phosphate synthase (DXPS) of the methylerythritol 4-phosphate (MEP) pathway for which we have previously identified three active compound classes against Mycobacterium tuberculosis. The close structural similarities of the active sites of the DXPS enzymes of P. falciparum and M. tuberculosis prompted investigation of their antiparasitic action, all classes …