Proteomic Profiling Of Maize Opaque Endosperm Mutants
Reveals Selective Accumulation Of Lysine-Enriched Proteins,
2016
University of Nebraska-Lincoln
Proteomic Profiling Of Maize Opaque Endosperm Mutants Reveals Selective Accumulation Of Lysine-Enriched Proteins, Kyla J. Morton, Shangang Jia, Chi Zhang, David R. Holding
Department of Agronomy and Horticulture: Faculty Publications
Reduced prolamin (zein) accumulation and defective endoplasmic reticulum (ER) body formation occurs in maize opaque endosperm mutants opaque2 (o2), floury2 (fl2), defective endosperm*B30 (DeB30), and Mucronate (Mc), whereas other opaque mutants such as opaque1 (o1) and floury1 (fl1) are normal in these regards. This suggests that other factors contribute to kernel texture. A liquid chromatography approach coupled with tandem mass spectrometry (LC-MS/MS) proteomics was used to compare non-zein proteins of nearly isogenic opaque endosperm mutants. In total, 2762 proteins were identified that were enriched for biological processes such …
Simulating Long-Term Impacts Of Cover Crops And Climate Change On
Crop Production And Environmental Outcomes In The Midwestern
United States,
2016
Iowa State University
Simulating Long-Term Impacts Of Cover Crops And Climate Change On Crop Production And Environmental Outcomes In The Midwestern United States, Andrea D. Basche, Sotririos V. Archontoulis, Thomas C. Kaspar, Dan B. Jaynes, Timothy B. Parkin, Fernando E. Miguez
Department of Agronomy and Horticulture: Faculty Publications
It is critical to evaluate conservation practices that protect soil and water resources from climate change in the Midwestern United States, a region that produces one-quarter of the world’s soybeans and one-third of the world’s maize. An over-winter cover crop in a maize–soybean rotation offers multiple potential benefits that can reduce the impacts of higher temperatures and more variable rainfall; some of the anticipated changes for the Midwest. In this experiment we used the Agricultural Production Systems sIMulator (APSIM) to understand how winter rye cover crops impact crop production and environmental outcomes, given future climate change. We first tested APSIM …
Decipher The Molecular Response Of Plant Single Cell
Types To Environmental Stresses,
2016
University of Oklahoma
Decipher The Molecular Response Of Plant Single Cell Types To Environmental Stresses, Mehrnoush Nourbakhsh-Rey, Marc Libault
Department of Agronomy and Horticulture: Faculty Publications
The analysis of the molecular response of entire plants or organs to environmental stresses suffers from the cellular complexity of the samples used. Specifically, this cellular complexity masks cell-specific responses to environmental stresses and logically leads to the dilution of the molecular changes occurring in each cell type composing the tissue/organ/plant in response to the stress.Therefore, to generate a more accurate picture of these responses, scientists are focusing on plant single cell type approaches. Several cell types are now considered as models such as the pollen, the trichomes, the cotton fiber, various root cell types including the root hair cell, …
Organic Struggle: The Movement For Sustainable Agriculture In The United States [Book Review],
2016
University of Nebraska-Lincoln
Organic Struggle: The Movement For Sustainable Agriculture In The United States [Book Review], Charles A. Francis
Department of Agronomy and Horticulture: Faculty Publications
Organic Struggle chronicles the challenges encountered by innovators in a growing segment of the U.S. food production and marketing system. Practiced for millennia by farmers before the introduction of chemical fertilizers and pesticides, and first developed more formally in Europe, organic farming practices began to gain prominence in the United States only in the 1950s. Far more than a system for producing food, this strategy has become a focus for those supporting healthy and pesticide-free products, for some who embrace the organic system as a food movement, and by many who disagree with the current domination of the country’s food …
Draft Genome Sequence Of Erwinia Tracheiphila, An Economically
Important Bacterial Pathogen Of Cucurbits,
2016
Harvard University
Draft Genome Sequence Of Erwinia Tracheiphila, An Economically Important Bacterial Pathogen Of Cucurbits, Lori R. Shapiro, Erin D. Scully, Dana Roberts, Timothy J. Straub, Scott M. Geib, Jihye Park, Andrew G. Stephenson, Erika Salaau Rojas, Quin Liu, Gwyn Beattie, Mark Gleason, Consuelo M. De Moraes, Mark C. Mescher, Shelby G. Fleischer, Roberto Kolter, Naomi Pierce, Olga Zhaxybayeva
Department of Agronomy and Horticulture: Faculty Publications
Erwinia tracheiphila is one of the most economically important pathogens of cucumbers, melons, squashes, pumpkins, and gourds in the northeastern and midwestern United States, yet its molecular pathology remains uninvestigated. Here, we report the first draft genome sequence of an E. tracheiphila strain isolated from an infected wild gourd (Cucurbita pepo subsp. texana) plant. The genome assembly consists of 7 contigs and includes a putative plasmid and at least 20 phage and prophage elements.
Muts Homolog1 Silencing Mediates Orf220
Substoichiometric Shifting And Causes Male Sterility In
Brassica Juncea,
2016
Zhejiang University
Muts Homolog1 Silencing Mediates Orf220 Substoichiometric Shifting And Causes Male Sterility In Brassica Juncea, Na Zhao, Xinyue Xu, Yashitola Wamboldt, Sally Ann Mackenzie, Xiaodong Yang, Zhongyuan Hu, Jinghua Yang, Mingfang Zhang
Department of Agronomy and Horticulture: Faculty Publications
Cytoplasmic male sterility (CMS) has consistently been associated with the expression of mitochondrial open reading frames (ORFs) that arise from genomic rearrangements. Spontaneous fertility reversion in CMS has been observed in several cases, but a clear understanding of fertility reversion controlled by nuclear genetic influences has been lacking. Here, we identified spontaneous fertile revertant lines for Brassica juncea CMS cytoplasm in which the mitochondrial genome has undergone substoichiometric shifting (SSS) to suppress ORF220 copy number. We placed ORF220, with or without a mitochondrial targeting presequence, under the control of the CaMV35S and AP3 promoters in Arabidopsis to confirm that ORF220 …
New Records Of Basidiomycota From Trabzon, Tokat, And İstanbul Provinces In Turkey,
2016
TÜBİTAK
New Records Of Basidiomycota From Trabzon, Tokat, And İstanbul Provinces In Turkey, Ertuğrul Sesli̇, İbrahi̇m Türkekul, Ilgaz Akata, Tuula Ni̇skanen
Turkish Journal of Botany
Basidiomata were collected from Trabzon, Tokat, and İstanbul provinces between 2011 and 2015. Standard methods were used during collecting and microscopic investigations. Cantharellus ianthinoxanthus (R.Maire) Kühner, Cortinarius humicola (Quél.) Maire, Cortinarius obtusorum Rob.Henry, Cortinarius rubicundulus (Rea) A.Pearson, Cortinarius sordescens Rob.Henry, Crinipellis subtomentosa
Sem Studies Of Two Riparian New-Caledonian Conifers Reveal Air Channels In Stem Wood; Field Observations,
2016
Santa Barbara Botanic Garden, Santa Barbara, California
Sem Studies Of Two Riparian New-Caledonian Conifers Reveal Air Channels In Stem Wood; Field Observations, Sherwin Carlquist, Mare Nazaire
Aliso: A Journal of Systematic and Floristic Botany
Two New Caledonian conifers, Dacrydium guillauminii and Retrophyllum minor, both of Podocarpaceae, occupy distinctive habitats in which roots are characteristically inundated. SEM studies of stem wood anatomy of both reveal characteristic vertical intercellular channels, not apparent in light microscope examination. These channels are regular in spacing as seen in radial sections and indefinite in vertical extent; they were observed only adjacent to rays. These channels, not reported in other conifers, are a potential source of aeration for roots and submersed stem portions. Other wood details are reported. In order to provide a more comprehensive picture of adaptation to these …
A Morphometric Analysis Of Arceuthobium Campylopodum And Arceuthobium Divaricatum (Viscaceae),
2016
Northern Arizona University, Flagstaff
A Morphometric Analysis Of Arceuthobium Campylopodum And Arceuthobium Divaricatum (Viscaceae), Robert L. Mathiasen, Shawn C. Kenaley, Carolyn M. Daugherty
Aliso: A Journal of Systematic and Floristic Botany
Although the classification of pinyon dwarf mistletoe (Arceuthobium divaricatum, Viscaceae) has not been controversial to any extent since Engelmann described it in 1878, a recent taxonomic treatment has included this species in western dwarf mistletoe (A. campylopodum). While pinyon dwarf mistletoe is only known to parasitize pinyon pines (Pinus subsection Cembroides), western dwarf mistletoe as it has been known since the late 1800s is a principal parasite of Pinus ponderosa and P. jeffreyi and has never been observed parasitizing pinyon pines. With reservations about the recent classification of pinyon dwarf mistletoe and its treatment …
Tomus Nominum Eriastri: The Nomenclature And Taxonomy Of Eriastrum (Polemoniaceae: Loeselieae),
2016
Rancho Santa Ana Botanic Garden, Claremont, California
Tomus Nominum Eriastri: The Nomenclature And Taxonomy Of Eriastrum (Polemoniaceae: Loeselieae), Sarah J. De Groot
Aliso: A Journal of Systematic and Floristic Botany
A revised taxonomy for the genus Eriastrum is presented, including type information, synonymy, descriptions, and keys for identification. The nomenclature of Hugelia lanata, Gilia floccosa, and Gilia virgata var. yageri is clarified. Additionally, issues pertaining to August Brand’s, Thomas Nuttall’s, and Asa Gray’s names in Eriastrum are reviewed. An illustrated glossary of important descriptive terms is provided, along with photographs and illustrations of taxa and features. Lectotypes are proposed for 14 taxa. There is further discussion about the nomenclature and type localities for each taxon, comparison of circumscriptions from previous authors, and some field observations. Discussion of identifying …
Contents,
2016
University of Arkansas, Fayetteville
Contents, Discovery Editors
Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences
No abstract provided.
Discovery: The Student Journal Of Dale Bumpers College Of Agricultural, Food And Life Sciences - Volume 17 2016,
2016
University of Arkansas, Fayetteville
Discovery: The Student Journal Of Dale Bumpers College Of Agricultural, Food And Life Sciences - Volume 17 2016, Several Authors
Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences
No abstract provided.
Bumpers College Students In Action,
2016
University of Arkansas, Fayetteville
Bumpers College Students In Action, Discovery Editors
Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences
No abstract provided.
Long-Term Impacts Of Fuel Treatments On Tree Growth And Aboveground Biomass Accumulation In Ponderosa Pine Forests Of The Northern Rocky Mountains,
2016
University of Montana
Long-Term Impacts Of Fuel Treatments On Tree Growth And Aboveground Biomass Accumulation In Ponderosa Pine Forests Of The Northern Rocky Mountains, Kate A. Clyatt
Graduate Student Theses, Dissertations, & Professional Papers
In western North America, many low-elevation, dry forest types historically experienced frequent, low-severity fires. However, European settlement and fire suppression policies have contributed to over a century of fire exclusion, substantially altering forest structure and composition. There is considerable interest in restoring fire resilient characteristics to these forests through fuel reduction treatments. One limitation of current research on the impacts of fuel treatments is treatment longevity, as few studies have been able to quantify long-term responses to commonly applied treatments. This research evaluated tree growth and aboveground biomass responses 23 years after treatment in two silvicultural installations with different underburning …
Morphological And Molecular Characterization Of Gracilacus Wuae N. Sp.
(Nematoda: Criconematoidea) Associated With Cow Parsnip
(Heracleum Maximum) In Ontario, Canada,
2016
Agriculture and Agri-Food Canada
Morphological And Molecular Characterization Of Gracilacus Wuae N. Sp. (Nematoda: Criconematoidea) Associated With Cow Parsnip (Heracleum Maximum) In Ontario, Canada, Qing Yu, Weimin Ye, Thomas O. Powers
Department of Plant Pathology: Faculty Publications
Gracilacus wuae n. sp. from soil associated with cow parsnip in Ontario, Canada is described and illustrated. Morphologically, females have a long stylet ranging from 80 to 93 mmlong, the lip region not offset from the body contour, without lateral lips but with large and flat submedian lobes, the mouth opening slit-like elongated laterally and surrounded by lateral flaps, the excretory pore is anterior to the knobs of the stylet; males without stylet and the pharynx degenerated. The fourth-stage juveniles lack a stylet, the pharynx degenerated, and can be differentiated into preadult females and males based on the position of …
Prospects Of Genomic Prediction In The Usda Soybean Germplasm Collection: Historical Data Creates Robust Models For Enhancing Selection Of Accessions,
2016
University of Nebraska-Lincoln
Prospects Of Genomic Prediction In The Usda Soybean Germplasm Collection: Historical Data Creates Robust Models For Enhancing Selection Of Accessions, Diego Jarquin, James Specht, Aaron Lorenz
Department of Agronomy and Horticulture: Faculty Publications
The identification and mobilization of useful genetic variation from germplasm banks for use in breeding programs is critical for future genetic gain and protection against crop pests. Plummeting costs of next-generation sequencing and genotyping is revolutionizing the way in which researchers and breeders interface with plant germplasm collections. An example of this is the high density genotyping of the entire USDA Soybean Germplasm Collection. We assessed the usefulness of 50K SNP data collected on 18,480 domesticated soybean (G. max) accessions and vast historical phenotypic data for developing genomic prediction models for protein, oil, and yield. Resulting genomic prediction models explained …
Corn (Zea Mays L.) Seeding Rate Optimization In Iowa,
Usa,
2016
Iowa State University
Corn (Zea Mays L.) Seeding Rate Optimization In Iowa, Usa, Mark A. Licht, Andrew W. Lenssen, Roger W. Elmore
Department of Agronomy and Horticulture: Faculty Publications
Collecting soil, topography, and yield information has become more feasible and reliable with advancements in precision technologies. Combined with the accessibility of precision technologies and services to farmers, there has been increased interest and ability to make site-specific crop management decisions. The objective of this research was to develop procedures to optimize corn seeding rates and maximize yield using soil and topographic parameters. Experimental treatments included five seeding rates (61 750; 74 100; 86 450; 98 800; and 111 150 seeds ha-1) in a randomized complete block design in three central Iowa fields from 2012 to 2014 (nine …
Construction Of High Resolution Genetic
Linkage Maps To Improve The Soybean
Genome Sequence Assembly Glyma1.01,
2016
USDA-ARS
Construction Of High Resolution Genetic Linkage Maps To Improve The Soybean Genome Sequence Assembly Glyma1.01, Qijian Song, Jerry Jenkins, Gaofeng Jia, David L. Hyten, Vince Pantalone, Scott A. Jackson, Jeremy Schmutz, Perry B. Cregan
Department of Agronomy and Horticulture: Faculty Publications
Background: A landmark in soybean research, Glyma1.01, the first whole genome sequence of variety Williams 82 (Glycine max L. Merr.) was completed in 2010 and is widely used. However, because the assembly was primarily built based on the linkage maps constructed with a limited number of markers and recombinant inbred lines (RILs), the assembled sequence, especially in some genomic regions with sparse numbers of anchoring markers, needs to be improved. Molecular markers are being used by researchers in the soybean community, however, with the updating of the Glyma1.01 build based on the high-resolution linkage maps resulting from this research, …
Genome-Wide Discriminatory Information Patterns Of Cytosine Dna Methylation,
2016
University of Nebraska-Lincoln
Genome-Wide Discriminatory Information Patterns Of Cytosine Dna Methylation, Robersy Sanchez, Sally A. Mackenzie
Department of Agronomy and Horticulture: Faculty Publications
Cytosine DNA methylation (CDM) is a highly abundant, heritable but reversible chemical modification to the genome. Herein, a machine learning approach was applied to analyze the accumulation of epigenetic marks in methylomes of 152 ecotypes and 85 silencing mutants of Arabidopsis thaliana. In an information-thermodynamics framework, two measurements were used: (1) the amount of information gained/lost with the CDM changes IR and (2) the uncertainty of not observing a SNP LCR. We hypothesize that epigenetic marks are chromosomal footprints accounting for different ontogenetic and phylogenetic histories of individual populations. A machine learning approach is proposed to …
Expression Of Apoplast-Targeted Plant Defensin Mtdef4.2
Confers Resistance To Leaf Rust Pathogen Puccinia Triticina But Does Not Affect Mycorrhizal Symbiosis In Transgenic Wheat,
2016
Donald Danforth Plant Science Center
Expression Of Apoplast-Targeted Plant Defensin Mtdef4.2 Confers Resistance To Leaf Rust Pathogen Puccinia Triticina But Does Not Affect Mycorrhizal Symbiosis In Transgenic Wheat, Jagdeep Kaur, John Fellers, Alok Adholeya, Siva L.S. Velivelli, Kaoutar El-Mounadi, Natalya Nersesian, Thomas Clemente, Dilip Shah
Department of Agronomy and Horticulture: Faculty Publications
Rust fungi of the order Pucciniales are destructive pathogens of wheat worldwide. Leaf rust caused by the obligate, biotrophic basidiomycete fungus Puccinia triticina (Pt) is an economically important disease capable of causing up to 50 % yield losses. Historically, resistant wheat cultivars have been used to control leaf rust, but genetic resistance is ephemeral and breaks down with the emergence of new virulent Pt races. There is a need to develop alternative measures for control of leaf rust in wheat. Development of transgenic wheat expressing an antifungal defensin offers a promising approach to complement the endogenous resistance genes …
