Botany Commons^™

Genomic-Enabled Prediction Accuracies Increased By Modeling Genotype × Environment Interaction In Durum Wheat, Sivakumar Sukumaran, Diego Jarquin, José Crossa, Matthew Reynolds

Department of Agronomy and Horticulture: Faculty Publications

Genomic prediction studies incorporating genotype × environment (G×E) interaction effects are limited in durum wheat. We tested the genomic-enabled prediction accuracy (PA) of Genomic Best Linear Unbiased Predictor (GBLUP) models—six non-G × E and three G × E models—on three basic cross-validation (CV) schemes— in predicting incomplete field trials (CV2), new lines (CV1), and lines in untested environments (CV0)— in a durum wheat panel grown under yield potential, drought stress, and heat stress conditions. For CV0, three scenarios were considered: (i) leave-one environment out (CV0-Env); (ii) leave one site out (CV0- Site); and (iii) leave 1 yr out (CV0-Year). The …

Evaluation Of Jules-Crop Performance Against Site Observations Of Irrigated Maize From Mead, Nebraska, Karina Williams, Jemma Gornall, Anna Harper, Andy Wiltshire, Debbie Hemming, Tristan Quaife, Tim Arkebauer, David Scoby

Department of Agronomy and Horticulture: Faculty Publications

The JULES-crop model (Osborne et al., 2015) is a parametrisation of crops within the Joint UK Land Environment Simulator (JULES), which aims to simulate both the impact of weather and climate on crop productivity and the impact of croplands on weather and climate. In this evaluation paper, observations of maize at three FLUXNET sites in Nebraska (US-Ne1, US-Ne2 and US-Ne3) are used to test model assumptions and make appropriate input parameter choices. JULES runs are performed for the irrigated sites (US-Ne1 and US-Ne2) both with the crop model switched off (prescribing leaf area index (LAI) and canopy height) and with …

Science In The Supply Chain: Collaboration Opportunities For Advancing Sustainable Agriculture In The United States, Allison M. Thomson, Stewart Ramsey, Ed Barnes, Bruno Basso, Marlen Eve, Sasha Gennet, Patricio Grassini, Brandon Kliethermes, Marty Matlock, Eileen Mcclellen, Ed Spevak, Clifford S. Snyder, Mark D. Tomer, Chris Van Kessel, Tristram West, Grant Wick

Department of Agronomy and Horticulture: Faculty Publications

Consumers and corporations are increasingly interested in understanding the sustainability of agricultural supply chains and reducing the environmental impacts of food, fiber, feed, and fuel production. This emerging need to quantify environmental impacts from agricultural production creates an opportunity for collaboration with the scientific community. Without such collaboration, sustainability efforts risk failure by adopting unrealistic goals or misguided approaches. This commentary explores the role of science in Field to Market, a nonprofit organization developing a sustainability program for US commodity crops, and highlights opportunities to address emerging science challenges. We evaluate changes over the past 35 years in key environmental …

Genetic Characterization Of The Soybean Nested Association Mapping Population, Qijian Song, Long Yan, Charles Quigley, Brandon D. Jordan, Edward Fickus, Steve Schroeder, Bao-Hua Song, Yong-Qiang Charles An, David Hyten, Randall L. Nelson, Katy Rainey, William D. Beavis, Jim Specht, Brian Diers, Perry Cregan

Department of Agronomy and Horticulture: Faculty Publications

A set of nested association mapping (NAM) families was developed by crossing 40 diverse soybean [Glycine max (L.) Merr.] genotypes to the common cultivar. The 41 parents were deeply sequenced for SNP discovery. Based on the polymorphism of the single-nucleotide polymorphisms (SNPs) and other selection criteria, a set of SNPs was selected to be included in the SoyNAM6K BeadChip for genotyping the parents and 5600 RILs from the 40 families. Analysis of the SNP profiles of the RILs showed a low average recombination rate. We constructed genetic linkage maps for each family and a composite linkage map based on …

Editorial: Genomic Approaches For Improvement Of Understudied Grasses, Keenan Amundsen, Gautam Sarath, Teresa Donze-Reiner

Department of Agronomy and Horticulture: Faculty Publications

Grasses are diverse, spanning native prairies to high-yielding grain cropping systems. They are valued for their beauty and useful for soil stabilization, pollution mitigation, biofuel production, nutritional value, and forage quality; grasses encompass the most important grain crops in the world. There are thousands of distinct grass species and many have promiscuous hybridization patterns, blurring species boundaries. Resources for advancing the science and knowledgebase of individual grass species or their unique characteristics varies, often proportional to their perceived value to society. For many grasses, limited genetic information hinders research progress. Presented in this research topic is a brief snapshot of …

Expression Of The Maize Dof1 Transcription Factor In Wheat And Sorghum, Pamela A. Pena, Truyen Quach, Shirley Sato, Zhengxiang Ge, Natalya Nersesian, Taity Changa, Ismail M. Dweikat, Madhavan Soundararajan, Tom E. Clemente

Department of Agronomy and Horticulture: Faculty Publications

Nitrogen is essential for plant growth and development. Improving the ability of plants to acquire and assimilate nitrogen more efficiently is a key agronomic parameter that will augment sustainability in agriculture. A transcription factor approach was pursued to address improvement of nitrogen use efficiency in two major commodity crops. To this end, the Zea mays Dof1 (ZmDof1) transcription factor was expressed in both wheat (Triticum aestivum) and sorghum (Sorghum bicolor) either constitutively, UBI4 promoter from sugarcane, or in a tissue specific fashion via the maize rbcS1 promoter. The primary transcription activation target of ZmDof1 …

High-Throughput Profiling And Analysis Of Plant Responses Over Time To Abiotic Stress, Kira M. Veley, Jeffrey C. Berry, Sarah J. Fentress, Daniel P. Schachtman, Ivan Baxter, Rebecca Bart

Department of Agronomy and Horticulture: Faculty Publications

Sorghum (Sorghum bicolor (L.) Moench) is a rapidly growing, high-biomass crop prized for abiotic stress tolerance. However, measuring genotype-by-environment (G x E) interactions remains a progress bottleneck. We subjected a panel of 30 genetically diverse sorghum genotypes to a spectrum of nitrogen deprivation and measured responses using high-throughput phenotyping technology followed by ionomic profiling. Responses were quantified using shape (16 measurable outputs), color (hue and intensity), and ionome (18 elements). We measured the speed at which specific genotypes respond to environmental conditions, in terms of both biomass and color changes, and identified individual genotypes that perform most favorably. With this …

Influence Of Tillage On Common Ragweed (Ambrosia Artemisiifolia) Emergence Pattern In Nebraska, Ethann R. Barnes, Rodrigo Werle, Lowell Sandell, John L. Lindquist, Stevan Z. Knezevic, Peter H. Sikkema, Amit J. Jhala

Department of Agronomy and Horticulture: Faculty Publications

Spring tillage is a component of an integrated weed management strategy for control of early emerging glyphosate-resistant weeds such as common ragweed; however, the effect of tillage on common ragweed emergence pattern is unknown. The objectives of this study were to evaluate whether spring tillage during emergence would influence the emergence pattern or stimulate additional emergence of common ragweed and to characterize common ragweed emergence in southeast Nebraska. A field experiment was conducted for three years (2014 to 2016) in Gage County, Nebraska in a field naturally infested with glyphosate-resistant common ragweed. Treatments consisted of a no-tillage control and three …

Actaea Racemosa: The Slender Wands Of Flowering Common Black Cohosh Beckon Us To Explore Woodlands, W. John Hayden

Biology Faculty Publications

Common Black Cohosh is a perennial rhizomatous forest herb. Its horizontal rhizomes bear numerous adventitious roots on the underside and aerial stems of annual duration on the upper side, along with knobby scars left from aerial stems of previous years. Leaves are alternate, twice or thrice compound in ternate or pinnate patterns, and large—up to 1 m long. Individual leaflet size and shape vary with position in the large compound leaves, with position of a leaf on the stem, and from population to population. Most often leaflets are coarsely serrate, lobed to deeply incised, with a truncate to cuneate base …

Taxonomic Revision Of Dendrobium Sw. Section Stachyobium Lindl. (Orchidaceae) In Thailand, Phataravee Prommanut

Chulalongkorn University Theses and Dissertations (Chula ETD)

Taxonomic revision of Dendrobium Sw. section Stachyobium Lindl. in Thailand has been conducted from 2015-2018 based on natural habitats observation in Thailand as well as various herbaria visits, i.e. BCU, BK, BKF, BM, C, CMUB, E, K, KKU and QBG. Key to species, taxonomic descriptions, ecological data, illustrations and geographical distribution of all taxa are provided. Twenty four taxa with including 21 species and 3 varieties were recognized. Among these, two species namely Dendrobium chiangdaoense and D. obchantiae are new to Thailand and two species viz. Dendrobium sp.2 and Dendrobium sp.3 are being proposed as new species. Besides, Dendrobium sp.1 …

Are Weevils Picky Eaters? Community Structure And Host Specificity Of Neotropical Saproxylic Beetles (Coleoptera: Curculionidae), Jhunior A. Morillo

Dissertations and Theses

Abstract Primary saproxylic beetles play a major role in forest nutrient cycling and making deadwood accessible to other decomposers. Understanding beetle host preferences and patterns of community assembly is critical for their conservation, and for predicting which species might become invasive. This project aims to investigate the ecological and host specificity, as well as the community composition of curculionids in a mosaic of old-growth (OG) and secondary forest on the Osa Peninsula, Costa Rica. The subfamily Scolytinae was expected to be the most species-rich and abundant. Ambrosia beetles were expected to have more generalist species than other curculionids. Old growth …

Developmental Analysis Of Leea Guineensis (Leeaceae), Sally Gray

Honors Program Theses

Vitaceae is the grape family of flowering plants that is composed of twelve genera of woody plants (Jones et al., 2013). Vitis has been studied extensively for the commercial value of the fruit in the wine and grape production. However, not a lot of research has been done specifically on its basic biology such as leaf development within the family.

Understanding the basic biology of the plant can help with understanding its growth habit and help with improving the overall health of the plant. For example, analyzing flowers and leaves is a good way to draw inferences about developmental similarities …

Sepals And Petals And Stamens—Oh, My! Or, A Brief Discourse On Putative Homologies Of Perianth Elements Of Common Black Cohosh, W. John Hayden

Biology Faculty Publications

I encountered some contradictory information while preparing to write the 2017 Wildflower of the Year brochure: some sources describe flowers of Actaea racemosa, Common Black Cohosh, as having petals, while others say petals are absent. How can that be? How could there be such uncertainty about this common plant, one known to science since before the time of Linnaeus? After a little research, I decided to describe Black Cohosh flowers as having a series of organs interpretable either as staminodes (nonfunctional stamens) or as petals located between its sepals and stamens (Figure 1). Frankly, I waffled on the petal issue, …

A New Bryophyte Community And Three New Records For The Epiphytic Bryophyte Vegetation Of Turkey, Mevlüt Alataş, Güray Uyar

Turkish Journal of Botany

Based on 38 relevés, the Lewinskyetum affinis ass. nov. (Ulotion crispae alliance) was described and characterized as a new epiphytic association from the Abant Mountains (Northwest Turkey). To the best of our knowledge, this is the first report about three epiphytic bryophyte associations, namely Dicranetum taurici, Pterigynandretum filiformis, and Orthotricho straminei-Pterigynandretum filiformis, in Turkey. In addition, multivariate analysis techniques such as two-way indicator species analysis (TWINSPAN) and detrended correspondence analysis (DECORANA) were used to examine epiphytic bryophyte communities for cluster analysis and ordination analysis, respectively.

A New Species Of Micromeria (Lamiaceae) From Köyceğiz (Muğla, Southwest Of Turkey), Hayri̇ Duman, Tuncay Di̇rmenci̇

Turkish Journal of Botany

A new species, Micromeria aybalae H.Duman & Dirmenci (Lamiaceae), Micromeria Benth. sect. Micromeria, is described from Muğla Province in southwestern Turkey. A description, taxonomic note, distribution map, habitat, and nrDNA ITS and cpDNA trnL-F based phylogeny are presented. The differences between the new species and its allies, Micromeria cremnophila Boiss. & Heldr. s.l. and M. hispida Benth., are discussed, and an identification key is provided for the Turkish Micromeria.

Taxonomy Of Poa Jubata And A New Section Of The Genus (Poaceae), Evren Cabi̇, Robert John Soreng, Lynn Gillespie

Turkish Journal of Botany

Poa jubata A.Kern. is an ephemeral, southeastern European species of which little is known. A molecular phylogenetic analysis of Poa L., including all previously identified major lineages, shows this species to be isolated, with a genotype here designated as J (plastid) j (nrDNA). It is assigned to the monotypic P. sect. Jubatae sect. nov. The section is differentiated from other Poa sections in having 5-nerved upper glumes, very narrow palea flanges, an annual habit, and erect solitary culms. Poa jubata occurs along coastal regions of the Balkans and is rather rare. Two new collections were made in 2015 in Thrace, …

Habitat Factors Influencing The Competitive Ability Of Calamagrostis Epigejos (L.) Roth In Mountain Plant Communities, Daniel Pruchniewicz, Ludwik Zolnierz, Vlatko Andonovski

Turkish Journal of Botany

The aim of this study was to assess how the expansion of Calamagrostis epigejos influences the species composition and diversity of forest, clearing, and meadow communities as well as how habitat factors influence biometric variability and features determining the potential of Calamagrostis epigejos for expansion in the studied communities. The study was conducted in the central part of the Sudetes Mountains (SW Poland). Four types of communities with C. epigejos occurrence were chosen: a beech forest (Luzulo luzuloidis-Fagetum), a Norway spruce monoculture, a clearing community belonging to the Epilobietea angustifolii class, and a mesic mountain meadow of the Arrhenatheretalia order. …

Peucedanum Guvenianum (Apiaceae), A New Species From West Anatolia, Turkey, Hasan Yildirim, Hayri̇ Duman

Turkish Journal of Botany

Peucedanum guvenianum Yıldırım & H.Duman is described as a species new to science. It is endemic to the West Anatolia region of Turkey. It is known from a single locality in İzmir Province. P. guvenianum shows similarities to P. longifolium, P. ruthenicum, and P. vourinense. Diagnostic morphological characters are discussed and compared with those of closely related taxa. It is easily distinguished from related species especially by its stem 130-220 cm tall, distinctly striate, densely branched from below the middle to upper part; basal leaves 28-40 cm long and 20-70 cm wide; bracts linear-lanceolate and erect; petals emarginate at apex; …

Syntaxonomical Analysis Of The Riparian Vegetation Of The Porsuk River (Eskişehir-Kütahya/Turkey), Ebru Özdeni̇z, Lati̇f Kurt, Erwin Bergmeier

Turkish Journal of Botany

This study is about the classification and syntaxonomic allocation of the riparian vegetation of the Porsuk River (Eskişehir-Kütahya, western part of Central Anatolia). The Porsuk is part of the Sakarya River basin and is the longest tributary of the Sakarya River. The data were collected using the phytosociological method of Braun-Blanquet and analyzed using TWINSPAN classification and NMDS ordination. Ten syntaxa were identified, all of which are more or less widespread in the nemoral and meridional zone. The woody alluvial vegetation of the study area comprises the associations Salicetum albae, Populetum albae, and Elymo-Rubetum caesii. The riparian reed bed vegetation …

Studies On The Floral Anatomy And Scent Chemistry Of Titan Arum(Amorphophallus Titanum, Araceae), Vijayasankar Raman, Nurhayat Tabanca, Betül Demi̇rci̇, Ikhlas Khan

Turkish Journal of Botany

Amorphophallus titanum (Becc.) Becc. ex Arcang., the titan arum, is popularly known for having the world's largest unbranched inflorescence. The enormous flower-like inflorescence is also called 'corpse flower' or 'carrion flower' due to the characteristic putrid odor of the bloom. The present study illustrates detailed anatomy and micromorphology of the inflorescence by light and scanning electron microscopy. Collenchyma was found to be the major tissue providing mechanical support in the spathe. The appendix consisted of a dense parenchymatous cortex enclosing a hollow center traversed by loose networks of aerenchyma. Anthocyanin pigments found in the epidermises and cortical tissues imparted a …