Microbiology Commons^™

Characterization Of Neuronal Nicotinic Acetylcholine Receptors And Their Positive Allosteric Modulators, Doris Clark Jackson

Theses and Dissertations

Neuronal nicotinic acetylcholine receptors (nAChRs) are ligand-gated ion channels that are necessary in memory and cognition. They are pentameric and consist of α and β subunits. They are most commonly heteromeric but, can sometimes be homomeric. nAChRs are activated by many ligands including nicotine (exogenous) and acetylcholine (endogenous).nAChRs are located on hippocampal interneurons. The interneurons, although sparse, control the synchronous firing of the pyramidal cells. However, the hippocampal interneuron structure and function is quite diverse and not fully characterized. Therefore, we sought to quantify nAChR subunit mRNA levels using real-time PCR of CA1 hippocampal interneurons.Surprisingly we found that the α3 …

Serious Fungal Infections In Pakistan, Kauser Jabeen, Joveria Farooqi, Sajjad Mirza, D Denning, Afia Zafar

Department of Pathology and Laboratory Medicine

The true burden of fungal infection in Pakistan is unknown. High-risk populations for fungal infections [tuberculosis (TB), diabetes, chronic respiratory diseases, asthma, cancer, transplant and human immunodeficiency virus (HIV) infection] are numerous. Here, we estimate the burden of fungal infections to highlight their public health significance. Whole and at-risk population estimates were obtained from the WHO (TB), BREATHE study (COPD), UNAIDS (HIV), GLOBOCAN (cancer) and Heartfile (diabetes). Published data from Pakistan reporting fungal infections rates in general and specific populations were reviewed and used when applicable. Estimates were made for the whole population or specific populations at risk, as previously …

Pas Signaling Mechanisms In Aer And Aer2, Darysbel Garcia

Loma Linda University Electronic Theses, Dissertations & Projects

PAS domains are widespread signal sensors that share a conserved three-dimensional αβ fold that consists of a central β-sheet flanked by several α- helices. The aerotaxis receptor Aer from Escherichia coli and the Aer2 chemoreceptor from Pseudomonas aeruginosa both contain PAS domains. Aer senses oxygen (O2) indirectly via an FAD cofactor bound to its PAS domain, while Aer2 directly binds O2 to its PAS b-type heme cofactor. The Aer and Aer2 PAS domains both interact with a signal transduction domain known as a HAMP domain. The PAS-HAMP arrangement differs between Aer and Aer2, with Aer- PAS residing adjacent to its …

The Role Of Pas Kinase And Cbf1 In Cellular Metabolism, Jenny Adele Pattison, Julianne H. Grose

Journal of Undergraduate Research

The most recent National Institute of Health report concludes that 68.8% of American adults are considered to be overweight or obese1. With this trend in obesity, metabolic diseases such as heart disease, stroke, cancer, and diabetes are on the rise. The critical yet basic function of cellular homeostasis is a central component in controlling these diseases. Sensory protein kinases are essential in the phosphorylation of many protein substrates, allowing them to control several metabolic functions and appropriately allocate glucose, maintaining homeostasis in cells. PAS kinase is a sensory protein kinase that is highly conserved and plays a crucial role in …

Bacteriophages As A Biocontrol Agent Of Soft Rot In Potatoes, Trevor Hodson, Don Breakwell

Journal of Undergraduate Research

Pectobacterium carotovorum (Pcc) is a principle causative agent of soft rot in potatoes. It causes losses of up to 60% in potato yields in the USA (Mantsebo et. Al, 2014) and approximately $50-$100 million dollars’ worth of losses yearly in multiple types of crops. Because potatoes grow beneath the soil surface, there is no way of treating the potatoes until they are harvested. Even then, no postharvest methods of controlling this pathogen exist (Wood et. Al, 2013). A spray-able bacteriophage cocktail specific to Pcc could save millions of dollars-worth of crops each year by minimizing soft rot.

Seroprevalence Of Antibodies Against Kaposi's Sarcoma-Associated Herpesvirus Among Hiv-Negative People In China, Tiejun Zhang, Zhenqiu Liu, Jun Wang, Veenu Minhas, Charles Wood, Gary M. Clifford, Na He, Silvia Franceschi

Nebraska Center for Virology: Faculty Publications

Background: Little information on the prevalence of Kaposi’s sarcoma associated herpesvirus (KSHV) among HIV-negative individuals is available from Asia.

Methods: In the present study, we report findings from a new survey of KSHV in 983 HIV-negative male migrants from Shanghai and their combination with previous similar surveys of 600 female migrants, 600 female sex-workers (FSW), 1336 sexually transmitted infection (STI) clinic male patients, 439 intravenous drug-users (IVDU), and 226 men having sex with men (MSM) from China. KSHV-specific antibodies against latent and lytic antigens were assessed using Sf9 and BC3 monoclonal immunofluorescence assay. Age-adjusted prevalence ratios (PR) and 95% confidence …

A Phenome Wide Association Study Of Multiple Sclerosis And Comorbidities, Scott Frodsham, Mary Davis

Journal of Undergraduate Research

Genome wide association studies (GWAS) have identified relationships between many different genes and diseases. GWAS studies scan whole genomes of many individuals and then associate genetic variants with diseases that the individuals have. In contrast, a phenome wide association study (PheWAS), looks at the phenotypes of many individuals and associates those phenotypes with one or more genetic variants. Electronic medical records (EMRs) linked to DNA biobanks provide both clinical and genetic data of patients. This study utilizes one such EMRlinked DNA biobank called BioVU from Vanderbilt University.

Development Of An Animal Model In Which To Study Hiv-2, Taalin Rasmussen, Bradford Berges

Journal of Undergraduate Research

Human Immunodeficiency Virus (HIV) attacks and destroys the cells of the immune system necessary to mounting an effective immune response to successfully fight off infection. Unchecked, an HIV infection leads to a gradual deterioration of the immune system, giving rise to many opportunistic infections not normally seen in people with a functioning immune system. There are two subtypes of HIV: HIV-1, which accounts for the most HIV infections worldwide, and HIV-2, which is most commonly seen in West Africa and countries with strong socioeconomic ties to West Africa, such as France, Portugal, Spain, Angola, Mozambique, and Brazil (1). There is, …

Illuminating Novel Genes For Escherichia Coli Growth In Varying Phosphate Conditions Using Tnseq And Illumina Sequencing, Tanner Robinson, Dr. William R. Mccleary

Journal of Undergraduate Research

The purpose of my project is to identify novel genes in the genome of Escherichia coli ( E coli) associated with phosphate homeostasis under high phosphate conditions. The previous efforts that have been employed were great and innovative for their time, but both lacked the technology currently available, and focused solely on lowphosphate response. Other labs have used variations of the TnSeq protocol that I have, to address a variety of questions in many organisms, with great success (Subashchandrabose et al., 2013).

Characterization Of Genes Involved In Phycobiliprotein Biosynthesis In Fremyella Diplosiphon And Thermosynechococcus Elongatus, Christina M. Kronfel

LSU New Orleans Theses and Dissertations

Cyanobacteria are photosynthetic organisms that efficiently capture light by utilizing the light-harvesting complexes called phycobilisomes. In many cyanobacteria, phycobilisomes are composed of an allophycocyanin core with phycocyanin and phycoerythrin (PE) rods radiating from the core. These phycobiliproteins have multiple bilin chromophores, such as phycoerythrobilin (PEB), covalently attached to specific cysteine (Cys) residues for efficient photosynthetic light capture. Chromophore ligation on phycobiliprotein subunits occurs through bilin lyase catalyzed reactions.

This study mainly focuses on characterizing the roles of enzymes that are involved in the biosynthetic pathway of the phycobiliproteins within two cyanobacteria Thermosynechococcus elongatus and Fremyella diplosiphon. A combination of molecular …

Hybrid Peripheral Nerve Sheath Tumors: Report Of Five Cases And Detailed Review Of Literature, Nasir Ud Din, Zubair Ahmad, Jamshid Abdul Ghafar, Rashida Ahmed

Department of Pathology and Laboratory Medicine

BACKGROUND: Hybrid peripheral nerve sheath tumors (PNSTs) have been recognized recently and were first included in the 4th edition of World Health Organization (WHO) Classification of Tumors of Soft tissue and Bone, published in 2013. These tumors show combined features of more than one type of conventional benign peripheral nerve sheath tumors. The most common combinations are those of schwannoma/perineurioma followed by combinations of neurofibroma/schwannoma and neurofibroma/perineurioma. A detailed literature review of published cases is presented. We have discussed the types and etiology, epidemiology and sites of localization, gross and microscopic appearances and immunohistochemical features of hybrid PNSTs and association …

Visualizing Hemocyte Extracellular Traps In Galleria Mellonella, Timothy Siebach, Davidson Erickson

Journal of Undergraduate Research

Neutrophil extracellular traps (NETs) were recently found to be an additional method that neutrophils use to combat pathogens. They are composed of nuclear DNA and proteins that possess anti-microbial properties. Some studies suggest that in addition to killing pathogens, NETs also serve as a barrier to prevent pathogens from spreading. Mammalian infection models are known to possess NETs, but these models often raise ethical issues and can be quite costly. Using an insect such as Galleria mellonella is a valuable alternative. Insects possess an intricate innate immune response comparable to mammals in many ways. There is already substantial evidence indicating …

Evolutionary Enhancement Of Zika Virus Infectivity In Aedes Aegypti Mosquitoes, Yang Liu, Jianying Liu, Senyan Du, Cheng-Feng Qin, Penghua Wang, Pei-Yong Shi, Gong Cheng

NYMC Faculty Publications

Zika virus (ZIKV) remained obscure until the recent explosive outbreaks in French Polynesia (2013-2014) and South America (2015-2016). Phylogenetic studies have shown that ZIKV has evolved into African and Asian lineages. The Asian lineage of ZIKV was responsible for the recent epidemics in the Americas. However, the underlying mechanisms through which ZIKV rapidly and explosively spread from Asia to the Americas are unclear. Non-structural protein 1 (NS1) facilitates flavivirus acquisition by mosquitoes from an infected mammalian host and subsequently enhances viral prevalence in mosquitoes. Here we show that NS1 antigenaemia determines ZIKV infectivity in its mosquito vector Aedes aegypti, which …

Buried Alive: Urban Stream Burial In Grand Rapids, Michigan, Tanner Vincent

Student Papers and Reports

In the decades between 1913 and 1967, Silver and Coldbrook Creeks vanished from the urban landscape in the rapidly growing city of Grand Rapids, Michigan. A U.S. Geological Survey (USGS) map of Grand Rapids from 1914 shows both Silver and Coldbrook Creeks emptying into the Grand River west of their headwaters south and north of Reeds Lake, respectively. By 1967, the year a topographical map of Grand Rapids was created at a scale as fine as that of the 1914 map, both Silver and Coldbrook Creek had been erased from the landscape of Grand Rapids. A closer look at the …

Characterization Of Zinc And Cadmium Stress Response In Cyanobacterium Synechococcus Sp. Iu 625, Robert Newby Jr

Seton Hall University Dissertations and Theses (ETDs)

The way that cyanobacteria process and interact with heavy metals is an important part of their physiology. Metals like zinc play a role in many essential cell processes; while metals such as cadmium appear to be universally toxic. Little is known about how these metals play a role in the harmful overgrowth of cyanobacteria called blooms. While individual mechanisms have been elucidated, a complete response for metals in cyanobacteria has not yet been proposed. To establish a proposed mechanism of response in cyanobacteria, work was undertaken studying the response to zinc and cadmium in Synechococcus sp. IU 625 (S. IU …

Inhibiting Infectivity Of The Spindle Shaped Virus Using Silver Nanoparticles, Diana S. Demchenko

Student Research Symposium

Exploring the inhibiting factors of silver nanoparticles could change the way we approach drug-resistant viruses. In previous research, silver nanoparticles have shown to physically block viruses, such as HIV-1, from infecting its host by theoretically binding to surface receptors on the virus. Since there is little research done in this area, we have decided to combine silver nanoparticles with a virus that thrives within an extreme environment: the Spindle Shaped virus. By combining these two factors, we could reveal the biological and chemical properties that block the virus from infecting its host, Sulfolobus. Currently, we have collected data that shows …

Effect Of Spatial Influence On Endophyte Diversity Within Alnus Rubra, Sebastian L. Singleton

Student Research Symposium

Red alders (Alnus rubra) of the Pacific Northwest are characterized as actinorhizal dicotyledons; plants that possess that ability to form symbiotic relationships with endophytic organisms, which result in nitrogen-fixing nodules. In Alders of the order Fagales, such a symbiotic relationship with Frankia bacteria allows these plants to play crucial environmental roles as pioneer species able to colonize and enrich nutrient-deficient soils. This ability has a major impact on ecological succession by enabling other species to establish. Although inoculation with frankia bacteria is known to increase symbiotic nitrogen fixation capabilities of actinorhizal plants, whether they could confer the same benefit to …

Survey Of Microbial Urea Degrader Diversity In Two Freshwater Ecosystems: Lake Shenandoah And The Shenandoah River, Naomi E. Gilbert

Senior Honors Projects, 2010-2019

One of the primary drivers of cyanobacterial harmful algal blooms (cHABs) in freshwater systems is nutrient loading, particularly of nitrogen and phosphorus. There has been an increased focus on assessing the role of nitrogen (N) in freshwater lakes and rivers that suffer cHABs. Urea, a widely-used, N-rich fertilizer, is a source of interest due to its abundance in freshwater ecosystems, primarily caused by anthropogenic nutrient loading. While recent work has shown that cHAB population succession may favor the toxic cyanobacterium Microcystis in urea-rich waters, the diversity of the associated bacterial community capable of degrading urea has yet to be determined. …

The Antimicrobial And Biofilm Disruption Activity Of Novel Amphiphiles, Elizabeth A. Rogers

Masters Theses, 2010-2019

Antibiotic resistant infections are responsible for approximately 23,000 deaths every year in the United States alone. The formation of bacterial biofilms makes resistant bacteria difficult to eliminate completely using chemical treatment. Therefore, novel antimicrobial compounds such as amphiphiles are essential to slow or stop the spread of resistant bacteria. Several novel series of amphiphiles were synthesized, and discrete aspects of their chemical structure were altered to investigate the relationship between structure and antibacterial activity. Minimum inhibitory concentration (MIC) assays were used to measure antibacterial activity against two Gram-negative and five Gram-positive bacteria, and the most effective compounds were tested for …

Genetic Metabolic Complementation Establishes A Requirement For Gdp-Fucose In Leishmania, Hongjie Guo, Natalia M. Novozhilova, Giulia Bandini, Salvatore J. Turco, Michael A. L. Ferguson, Stephen M. Beverley

Molecular and Cellular Biochemistry Faculty Publications

To survive in its sand fly vector, the trypanosomatid protozoan parasite Leishmania first attaches to the midgut to avoid excretion, but eventually it must detach for transmission by the next bite. In Leishmania major strain Friedlin, this is controlled by modifications of the stage-specific adhesin lipophosphoglycan (LPG). During differentiation to infective metacyclics, d-arabinopyranose (d-Arap) caps the LPG side-chain galactose residues, blocking interaction with the midgut lectin PpGalec, thereby leading to parasite detachment and transmission. Previously, we characterized two closely related L. major genes (FKP40 and AFKP80) encoding bifunctional proteins with kinase/pyrophosphorylase activities required for salvage and …