Animal Sciences Commons^™

Lizards In The Trees: Structural, Functional, And Behavioral Specializations To A High-Risk Environment, Victor D. Munteanu

All Dissertations

Animals must contend with unexpected changes in their habitat and environment to thrive. Arboreal habitats can consist of a wide variety of environmental features, and failure to adequately contend with these features can result in high risk of injury or death upon falling. Despite these strong selective pressures, many vertebrate lineages have successfully invaded arboreal habitats. Using lizard taxa as a model system, I investigated how morphology and behavior have evolved within this specific habitat transition. I pursued these investigations through complementary analyses including: 1) evaluating the effect of stance height and tail prehensility on perturbation recovery, 2) assessing behavior …

Prenatal Acoustic Programming Of The Developing Hypothalamus: A Multi-Omic Analysis Of Heat Call Exposure In Zebra Finch Embryos, Prakrit Subba

All Dissertations

Climate change is intensifying thermal stress on wildlife globally, yet the developmental mechanisms by which embryos use prenatal cues to adjust to predicted environments remain unclear. In Australian zebra finches (Taeniopygia guttata), incubating parents produce distinctive heat call vocalizations at high ambient temperatures, and embryos exposed to these calls during late incubation develop altered growth trajectories, thermoregulatory capacity, and reproductive outcomes, suggesting a form of anticipatory developmental programming triggered by sound alone. To investigate the molecular basis of this response, I initially hypothesized that prenatal heat call exposure would act primarily through hypothalamic neuroendocrine reprogramming, given the central …

Transcriptional Regulation In The Uterine Luminal Epithelium, Evelyn A. Carrion

Dissertations and Theses (Open Access)

Transcriptional Regulation in the Uterine Luminal Epithelium

Evelyn A. Carrion

Advisor: Richard R. Behringer, PhD

Abstract

The uterus is an organ comprised of multiple tissues that are essential for women’s health and reproduction. The uterus is composed of multiple tissue layers, including the perimetrium, myometrium, and the endometrium. The endometrium is the inner lining of the uterus, and contains the luminal epithelium, glandular epithelium, and stroma. The luminal epithelium is a simple columnar layer of cells that is necessary for embryo implantation. The uterus is derived in part from the embryonic precursor tissue called the Müllerian duct. There are no …

Molecular Refinement Of The Taxonomy Of Pyrgulopsis Springsnails In Western North America, Michael K. Young, Kristine L. Pilgrim, Eric S. Miskow, Chante L. Lundskog, Kathryn E. Perez, Michael K. Schwartz

School of Integrative Biological & Chemical Sciences Faculty Publications

Springsnails in the genus Pyrgulopsis in western North America have long been a dilemma for taxonomists. Defining species boundaries has been complicated by the presence of undiscovered or cryptic taxa, range over- or underestimation, species complexes representing an unknown number of species, and named species synonymous with other taxa. To address these issues, we conducted an array of molecular species delimitation analyses using sequences from up to 2 mitochondrial and 2 nuclear genes from over 5000 specimens representing 140 of the 151 currently recognized taxa. These analyses reaffirmed most species hypotheses, favored synonymy for some taxa and redrawing of species …

Evaluating Fish Assemblages At An Early-Stage Living Shoreline Project In Lake Pontchartrain, Collin Glaser

LSU New Orleans Theses and Dissertations

Living shorelines are an increasingly popular restoration approach for reducing erosion while improving habitat quality. The Bucktown Living Shoreline Project is a large-scale restoration effort along the southern shore of Lake Pontchartrain aimed at enhancing coastal resilience and restoring historic marsh habitat. This thesis evaluated early fish assemblage response to the Bucktown Living Shoreline Project over one year and placed those assemblages within the broader historical context of Lake Pontchartrain. Monthly sampling was conducted at the living shoreline and an adjacent riprap control site using seines, cast nets, and minnow traps. Fish assemblage structure was not significantly different between sites. …

Extinction Risk Of Coral Reef Fishes In The Philippine Marine Ornamental Trade, Jemelyn Grace Baldisimo Sepulveda

Biological Sciences Theses & Dissertations

Coral reef ecosystems in the Philippines face severe threats from intense fishing and habitat degradation. This dissertation evaluated the extinction risk of fishes in the Philippine Marine Aquarium Trade (MAT) using Productivity Susceptibility Analysis (PSA) and temporal genomics. A global PSA framework was modified by including local susceptibility factors. Of the 103 species evaluated, six were categorized as highly vulnerable and 62 as moderately vulnerable, revealing increased local vulnerability and underscoring the importance of local assessments to guide conservation efforts.

Temporal genomics compared historical (1908–1909 U.S.S. Albatross Expedition) and contemporary populations of the MAT-targeted Sphaeramia nematoptera and Pseudanthias squamipinnis, …

Tissue-Specific And Sex-Dependent Microbiome Structure In East African Cattle Ticks (Amblyomma Gemma And Rhipicephalus Pulchellus) And Their Bovine Hosts, Dennis Getange, Samson Mukaratirwa, Rua Khogali, Epaphrus Yuko, James Kabii, Joel L. Bargul, Jandouwe Villinger

All Peer-Reviewed Publications

Ticks and their vertebrate hosts share intimate ecological interactions that shape microbial community composition, with implications for tick fitness and pathogen transmission. However, the extent and specificity of tick–host microbial interactions remain poorly understood, particularly in East African tick species. Here, we characterised microbial communities across multiple tissue types from two economically important tick species (Amblyomma gemma and Rhipicephalus pulchellus) and their shared bovine host using 16S rRNA V1-V2 gene sequencing. We profiled haemolymph, midgut, salivary glands, and gonads from individual ticks (25 Am. gemma and 8 Rh. pulchellus), alongside 12 bovine blood samples. Microbiota were dominated by Proteobacteria, Firmicutes, …

Harnessing Kenyan Aquaculture Through Social Media: Impacts, Challenges And Strategic Directions, Domitila Kyule, Jonathan Munguti, Mavindu Muthoka, Esther Magondu, Menaga Meenakshisundaram, Chrysantus M. Tanga, Kevin Obiero, Cecilia Githukia

All Peer-Reviewed Publications

Aquaculture is increasingly important for food, nutrition and livelihoods in Kenya, but the sector still faces persistent constraints in extension delivery, farmer learning, input access, market coordination and information reliability. This review examines how social media and related digital communication tools are shaping aquaculture development in Kenya, with attention to impacts, challenges, governance needs and strategic directions. A systematic literature review of studies and institutional sources published between 2015 and 2025 was conducted. The search identified 388 records, of which 45 sources were included in the final synthesis after screening, eligibility assessment and quality appraisal. Because the evidence was heterogeneous, …

Membrane Progestin Receptors Α And Β (Paqr7 And 8) Are Necessary For Oogenesis In Zebrafish, Md. Almamun Farid, Md. Razain Tanvir, Takumi Mouri, Eisei Tsutsumi, Md. Sohanur Rahman Sohan, Md. Ekramul Hasan, Md Saydur Rahman, Chihiro Yamamoto, Akiteru Maeno, Toshinobu Tokumoto

School of Integrative Biological & Chemical Sciences Faculty Publications

Paqr7 and paqr8 are genes encoding membrane progestin receptor αand β (mPRα and mPRβ, respectively), which are currently classified as members of the progestin and adipoQ receptor (PAQR) family. For mPRα, the first identified mPR gene, there are two paralogs in zebrafish, paqr7a and paqr7b. In order to elucidate the physiological functions of the mPR subtypes, we created gene knockout (KO) fish by editing seven paqr genes in zebrafish and analyzing their phenotypes. The null-mutant strains of paqr7a, paqr7b, and paqr8 presented no significant abnormalities in reproductive functions. Thus, we generated a triple-gene knockout (TKO) strain of …

A Comparison Of Ahdrift And Pitfall Traps For Surveying Small Vertebrates, Gabrielle Risko

All-Inclusive List of Electronic Theses and Dissertations

Understanding species occupancy is necessary to inform wildlife management and conservation decisions. To minimize the invasiveness of occupancy studies, some wildlife researchers have deployed game cameras to detect the presence of small vertebrates instead of utilizing stressful traditional live-capture methods. The Adapted Hunt Drift Fence Technique (AHDriFT) is an increasingly popular method for modifying and deploying camera traps to detect small vertebrates; however, no studies have directly compared AHDriFT to traditional pitfall traps operating at the exact same time, even though both are deployed along drift fences to capture small vertebrates. I compared these two methods (pitfall trapping and AHDriFT …

Trace Element Concentrations In Tissues And Otoliths Of Fishes From Artificial Reefs In The Northern Gulf Of Mexico: The Role Of Size, Age, And Trophic Position, Blaine Savoie

LSU New Orleans Theses and Dissertations

Nearshore artificial reefs and fishes relying on them to forage and refuge can be susceptible to trace element (TE) pollutants from anthropogenic sources. Although some TE are essential, higher concentrations can cause detrimental effects and concern regarding consumption. This study assesses TE accumulation in nearshore reef fishes in the northern Gulf of Mexico, a region influenced by coastal riverine discharge, where fishing has socioeconomic importance. Five fish species from six eco-reefs were collected and analyzed for TE. An inductively coupled plasma mass spectrometer was used to analyze the TE concentrations of muscle, liver, and otoliths. TE concentrations of tissues and …

Blue Crab Reproductive Output And Phenology In A Changing Climate, Blaise Rohan

Master's Theses

Globally, ecosystems are experiencing rising temperatures due to climate change, with potential consequences for reproductive investment and timing in many species. Blue crabs, Callinectes sapidus, support valuable commercial fisheries throughout the U.S. Atlantic and Gulf coasts, and understanding variation in reproductive output has important management and conservation implications. This study examined two components of blue crab reproduction: (1) reproductive investment across populations spanning multiple latitudes (New York, New Jersey, North Carolina, Mississippi, and Texas), using a space-for-time substitution to assess the effects of varying thermal regimes on fecundity and egg quality, and (2) spawning phenology in North Carolina from …

Is There Mush-Room For Bettongs On Dirk Hartog Island? Environmental Dna Assessment Of Food Resource Availability For Fauna Translocations, Rebecca J. Quah, Saul J. Cowen, Kelly J. Rayner, Aaron J. Brace, Robert A. Davis, Harriet R. Mills, Anna J.M. Hopkins

Research outputs 2022 to 2026

Conservation translocations require careful assessment of dietary resources to ensure population viability. Here, we used environmental DNA metabarcoding to characterise fungal assemblages across three major habitat types on Dirk Hartog Island, Western Australia, prior to the planned reintroduction of two threatened mycophagous species: the boodie (Bettongia lesueur) and woylie (Bettongia ogilbyi). We detected 243 fungal ASVs, of which 75 represented taxa that are likely to produce macroscopic fruiting bodies accessible to mycophagous mammals. Ectomycorrhizal fungi dominated all habitats, with Pezizaceae being the most abundant family—a pattern consistent with known dietary preferences of both species across multiple Australian locations. Fungal community …

Phytochemical Analysis And Safety Assessment Of Watercress Nasturtium Officinale: Antioxidant Capacity, Heavy Metal Profiling, And Toxicity Using Brine Shrimp Model, Qurrota A’Yunin, Chamini Kasun Hemachandra, Muhaimin Rifa’I, Yoga Dwi Jatmiko, Maftuch Maftuch, Rizky Fadilla Agustin Rangkuti, Cucun Herlina, Zulfa Mahdiatur Rasyida, Moh Dliyauddin

Karbala International Journal of Modern Science

Medicinal plants have attracted growing attention as sources of natural bioactive compounds for sustainable aquaculture and health. This study evaluated the phytochemical composition, antioxidant activity, heavy metal profile, and acute toxicity of watercress (Nasturtium officinale W.T. Aiton) methanol extract using maceration, qualitative and quantitative (TPC, TFC, antioxidant DPPH) phytochemical assay, XRF, and BSLA. Phytochemical screening of plant extracts showed the existence of flavonoids, alkaloids, phenols, tannins, triterpenoids, and saponins, but not steroidal. The TPC and TFC were 20.6 mg GAE/g and 10.8 mg QE/g, respectively. The extract displayed significant antioxidant activity (IC₅₀ = 64.78 µg/mL in DPPH assay). …

Surveys For Rare Springsnails In Southeast Oregon, 2025 With A Focus On The Donner Und Blitzen Pebblesnail (Fluminicola Insolitus), Jesse Laney

Institute for Natural Resources Publications

The Donner und Blitzen pebblesnail (Fluminicola insolitus) is a critically imperiled (G1/S1) freshwater snail historically known from a single spring, Page Springs, in the Donner und Blitzen River drainage of Harney County, Oregon. The species was petitioned for listing under the U.S. Endangered Species Act in February 2024. On January 26, 2026, the U.S. Fish and Wildlife Service published a positive 90-day finding initiating species status review (USFWS 2026).

In August 2025, the Oregon Biodiversity Information Center (ORBIC) at Portland State University, in coordination with the Nevada Division of Natural Heritage (NDNH), the U.S. Fish and Wildlife Service (USFWS), and …

What Does Sentience Mean At The Neural Level?, Björn Brembs

Animal Sentience

Jonathan Birch's (2025) LSE criteria for sentience include motivational trade-offs, exemplified by C. elegansweighing hunger against desiccation risk. Yet once the neural circuit is known, this "trade-off" reduces to a single inhibitory synapse—an ‘elemental’ account discrediting the ‘molar’ one. My commentary illustrates the same discrepancy in Drosophila: dopaminergic ramping during courtship as it progressively suppresses threat-detecting neurons; so persistence past danger reflects recalibrated valuation rather than a weighed decision. As neurobiology increasingly discovers such discrepancies, all criteria resting on behavioral classifications risk being defined away without altering the behavior's validity.

Bridging The Gap In Science Research: Preparing Students For College- Level Research In The Sciences, Victoria Helwig, Yaoguang Li

UConn Library Presentations

Many first-year students enter college unprepared to fully engage with scientific literature and academic library resources. Drawing on experiences from academic librarians working with STEM students, this session explores common gaps in science research skills, including navigating databases, identifying scholarly sources, and understanding the structure of scientific literature. Participants will be introduced to practical strategies and classroom-ready activities to better prepare students for college-level research. Discussion questions: What science research skills do students struggle with most when entering college? How can high school instruction better support these skills? Where can librarians and educators collaborate to support student success?

Scorpiops Walteri Sp. N. (Scorpiones: Scorpiopidae) From Myanmar, František Kovařík

Euscorpius

A new species Scorpiops walteri sp. n. (Scorpiopidae) is described from Myanmar, fully illustrated with color photos showing its morphology and habitus. Scorpiops walteri sp. n. is the only species of the genus with a combination of the following five characters: chelal trichobothrium Eb₃ located in middle of manus between trichobothria Dt and Est; patella of pedipalp with 11–12 ventral and 19 external trichobothria; fingers of pedipalps strongly undulate in male; pedipalp movable finger with ca. 47 IAD; and chela length to width ratio 2.8 in male.

Behavioral Analysis Of Cryptoprocta Ferox At The Central Florida Zoo And Botanical Gardens, Rita R. Albert

The Pegasus Review: UCF Undergraduate Research Journal

The fossa, Cryptoprocta ferox, is the largest carnivorous mammal endemic to the island of Madagascar. C. ferox is currently listed as a vulnerable species by the IUCN Red List (2015) due to deforestation. Most fossas are now located in zoos for breeding and repopulation purposes, but research on captive mating has been limited due to the low numbers of successful breeding attempts in captivity. The Central Florida Zoo and Botanical Gardens is home to two fossas, one male and one newly introduced female. This study notes behavioral changes in captive mating fossas, with a focus on the male fossa …

Using Fecal Diagnostic Tests To Assess The Prevalence Of Fasciola Hepatica In The United States Sheep Population, Brooke A. Delcambre

LSU Master's Theses

Fasciola hepatica, the common liver fluke, is endemic in the Pacific Northwest and Gulf Coast of the United States. To provide updated information on F. hepatica prevalence, as part of the USDA National Animal Health Monitoring System Sheep 2024 study, sheep operations in the top 30 sheep-producing states were identified, and producers were invited to participate. For each operation, feces were collected from at least eight sheep and pooled to form a single composite sample. Two methods were used to identify sheep infected with F. hepatica: fecal sedimentation and indirect sandwich ELISA. At the national level, across 318 operations, 7.1 …