Software Engineering Commons^™

Ai Failures In The Eyes Of The Downstream Developer: A First Look At Concerns, Practices, And Challenges, Haoyu Gao, Mansooreh Zahedi, Wenxin Jiang, Hong Yi Lin, James C. Davis, Christoph Treude

Research Collection School Of Computing and Information Systems

With the advancement of AI models, more software systems are adopting AI as a component to facilitate automation. Pre-trained models (PTMs) have become a cornerstone of AI-based software, allowing for rapid integration and development with lower training cost. However, their adoption also introduces failure modes such as data leakage and biased outputs, that may require careful handling by downstream developers. While previous research has proposed taxonomies of these technical concerns and various mitigation strategies, how downstream developers address these issues during the development of general AI-based software when reusing PTMs remains unexplored. Understanding downstream developers’ perspectives is essential because they …

Analyzing Developer Discussions On Eu And Us Privacy Legislation Compliance In Github Repositories, Georgia M. Kapitsaki, Maria Papoutsoglou, Christoph Treude, Ioanna Theophilou

Research Collection School Of Computing and Information Systems

Context: Privacy legislation has impacted the way software systems are developed, prompting practitioners to update their implementations. Specifically, the EU General Data Protection Regulation (GDPR) and the California Consumer Privacy Act (CCPA) have forced the community to focus on users’ data privacy. Objectives: Relying on the vast amount of data on developer issues available in GitHub repositories, our aim is to gather empirical evidence on the issues developers of Open Source Software discuss to comply with privacy legislation. Method: We examined such discussions by mining and analyzing 32,820 issues from GitHub repositories. We partially analyzed the dataset automatically to identify …

Mutation-Based Multi-Agent Test Case Update, Dawei Tian, Jiakun Liu, Yun Peng, Yichen Zhang, Jianlei Chi, Jun Sun, Xiaohong Su

Research Collection School Of Computing and Information Systems

Modern software systems evolve rapidly under CI/CD practices, where tests are critical for quality. However, substantial code changes often render existing test cases obsolete, causing pipeline disruptions, reduced productivity, and compromised quality. Recent automatic test update approaches leverage LLMs to refine test cases via execution feedback and exact-matching context retrieval, prioritizing executability and line coverage but suffering three limitations: (1) neglecting test assertion adequacy, weakening fault detection; (2) relying on coarse line coverage instead of specific uncovered lines/branches; (3) using exact-matching retrieval, which fails for LLM hallucinated queries. To address these, we propose MuMuTestUp, a mutation-guided multi-agent framework with three …

Ddor: Delta Debugging For Explainable Overrefusal Testing And Repair, Qinyan Zhou, Peixin Zhang, Jun Sun, Haonan Zhang, Dongxia Wang

Research Collection School Of Computing and Information Systems

While safety alignment and guardrails help large language models (LLMs) avoid harmful outputs, they can also induce overrefusal, i.e., unwarranted rejection of benign queries that merely appear risky. We present DDOR (Delta Debugging for OverRefusal), a fully automated and explainable framework for overrefusal testing and repair in a black-box setting, where only model inputs and outputs are accessible and internal safety mechanisms remain opaque. DDOR applies delta debugging to localize minimal refusal-triggering fragments (mRTFs) that provide phrase-level, explainable evidence for why a refusal occurs. Conditioned on these mRTFs, DDOR generates diverse, context-rich prompts and performs multi-oracle validation to filter intrinsically …

A Novel Entropy Based Maintainability Measurement Algorithm For Java Source Code., Remi M. Yusuf Mr, Md Shadab Mashuk, Julian Bass

Communications of the IIMA

Software metrics play a central role in assessing and managing the quality of software systems providing quantitative insights into attributes such as complexity, reliability, rigidity, modifiability and maintainability. Among these, maintainability is particularly critical, as it directly influences the ease of system evolution, long-term sustainability, and overall cost effectiveness. Despite the widespread use of metric-based maintainability measurement algorithms, capturing a value that reflects the maintainability situation of software source code remains a challenging task, especially in the presence of design deficiencies such as code smells. To measure changes in maintainability, this study experimentaly characterises the relationship between code smells and …

Ecu-Malnett V2, Matthew G. Gaber, Mohiuddin Ahmed, Michael N. Johnstone

Research Datasets

ECU-MALNETT (ECU MALware NETwork Traffic) is a real world, reproducible dataset of labeled benign and malicious network flows built from the Peekaboo execution corpus. Peekaboo runs evasive malware with dynamic binary instrumentation and records raw host-level PCAPs while granting full Internet access, yielding noisy, real-world captures with background OS activity and concurrent processes. To derive trustworthy labels from these traces, we apply Construct, a baseline aware, zero-trust labeling framework. Construct first ingests a baseline capture to establish reference sets (DNS qnames, HTTP hosts, TLS SNIs, and socket endpoints) and grows a conservative benign IP pool only via whitelisted DNS resolutions. …

Bayesian And Multi-Objective Decision Support For Incident Mitigation In Cyber-Physical Systems, Shaofei Huang, Christopher M. Poskitt, Lwin Khin Shar

Research Collection School of Computing and Information Systems

Cyber-physical systems increasingly rely on interconnected physical and digital systems whose security incidents can escalate rapidly into safety and operational failures. Existing decision-support approaches struggle to support incident response because they rely on static assumptions, incomplete vulnerability data, and single-objective risk models that do not adequately capture trade-offs between attack success likelihood, impact severity, and system availability. This paper proposes an adaptive decision-support framework for incident mitigation in cyber-physical systems that integrates hierarchical Bayesian Network modelling, confidence-calibrated exposure estimation, and multi-objective optimisation into a unified, adaptive pipeline. The framework constructs probabilistic models from system architecture and vulnerability data, incorporating complementary …

Myoelectric Transradial Prosthesis Motor Control With Temporal Convolutional Neural Network Signal Processing, Carolyn Ascha Richardson, Katherine Clark, Francis Genco, Hope Lea, Tobiah Rosser

Discovery Day - Daytona Beach

Transradial (below-the-elbow) amputees account for more than half of all upper limb amputations. Myoelectric prosthetic arms, which use electromyography (EMG) sensors on the surface of the forearm to convert electrical signals from residual limb muscles and mimic hand movement, are popular options for these amputees. However, these prostheses are limited in residual muscle detection and movement accuracy. The objective of this project is to affordably manufacture an externally-powered transradial prosthesis prototype through EMG time-versus-voltage readings collected with six Delsys Trigno Avanti and eight Thalmic MYO EMG sensor channels placed along the extensor digitorum, extensor carpi radialis, extensor carpi ulnaris, flexor …

From Code To Cube: Interactive Fluid Simulation With Real Time Motion Control, Dominic Ziccardi, Carter Groezinger

Discovery Day - Daytona Beach

This research project explores the use of FluidX3D, an open-source lattice Boltzmann method (LBM) solver, to simulate fluid behavior within a three-dimensional cube container. The system supports both standard water models and rheoscopic fluid visualization, allowing detailed observation of complex flow dynamics in real time. The simulation accurately represents fluid motion, gravity-driven behavior, and rotational response within a bounded cubic domain. The longterm objective is to extend this digital simulation into a physical installation consisting of six synchronized square displays arranged to form a cube. This configuration will create a volumetric illusion of fluid occupying a tangible, handheld structure. An …

Generalized Cloud-Based Compressible Aerodynamics Calculator And Simulation Web App, Massimo Mansueto, Liam Griesacker, Andres Torres-Figueroa

Discovery Day - Daytona Beach

The Generalized Cloud-Based Compressible Aerodynamics Calculator and Simulation Web App focuses on the development of a tool to support the analysis, visualization, and teaching of compressible aerodynamics. In the case of most undergraduate aerospace engineering courses, students rely on static equations, charts, and manual calculations, which can make it difficult to conceptualize complex flow phenomena such as shock waves, expansion fans, and nozzle flow. The purpose of this project is to create an accessible platform that integrates a compressible flow calculator, nozzle sizing tool, and interactive simulations into a single educational resource. The application is implemented using modern web development …

A Hybrid Llm-Srgm Framework For Ai-Enabled Reliability Assessment In Safety-Critical Software Systems, Caleb Stone, Shrenik Jadhav

Discovery Day - Daytona Beach

Ensuring the reliability of software intensive and safety critical systems is a persistent challenge across aerospace, defense, transportation, and other mis- sion focused domains. Traditional software relia- bility growth models (SRGM) provide useful quanti- tative insight into defect discovery trends, but they rely mostly only on numerical failure data and do not use the rich contextual information contained in test logs, anomaly reports, and engineering notes. This paper presents a hybrid framework that com- bines semantic features extracted by a large lan- guage model (LLM) with a non-homogeneous Pois- son process (NHPP) based software reliability growth model. The LLM analyzes …

Rockin’ Rover On The Rainbow Road, Michael Kolta, Lawrence Burgee, Ying Yuan

Transformations

This paper presents a progressive series of age-appropriate lesson plans for grades K-12 that all use the same interdisciplinary activity to educate students about Science, Technology, Engineering, Art, and Mathematics (STEAM) simultaneously. Technology from Texas Instruments (TI) was employed including a TI Nspire graphing calculator that can run Python programs, a TI Innovator Hub, and a TI Rover. The TI Rover is a small, robotic car that has sensors and is controlled by the calculator via the Hub hardware interface. A Python program was developed that uses the color sensor in the Rover to detect the color on colored paper …

Llm-As-A-Judge For Software Engineering: Literature Review, Vision, And The Road Ahead, Junda He, Jieke Shi, Terry Yue Zhuo, Christoph Treude, Jiamou Sun, Zhenchang Xing, Xiaoning Du, David Lo

Research Collection School Of Computing and Information Systems

The rapid integration of Large Language Models (LLMs) into software engineering (SE) has revolutionized tasks from code generation to program repair, producing a massive volume of software artifacts. This surge in automated creation has exposed a critical bottleneck: the lack of scalable and reliable methods to evaluate the quality of these outputs. Human evaluation, while effective, is very costly and time-consuming. Traditional automated metrics like BLEU rely on high-quality references and struggle to capture nuanced aspects of software quality, such as readability and usefulness. In response, the LLM-as-a-Judge paradigm, which employs LLMs for automated evaluation, has emerged. This approach leverages …

Leveraging Deep Learning Recurrence And Attention Mechanisms For Flood Forecasting And Assessment, Elnaz Heidari

All Dissertations

Predicting how much water will flow in rivers and streams is important for managing floods, water supply, and the environment. Traditionally, government agencies have used complex models, such as the National Water Model (NWM), which simulate how much water moves through landscapes using physical laws and real-world data. However, recent advances in Artificial Intelligence (AI) have enabled new ways to make these predictions. This research explored whether AI-based models could predict river discharge more accurately. These AI models learn patterns from past data instead of relying only on physical rules. To find out how well they work, the AI models …

Lessons From The Club Homeschool Capstone: Testing, Data Discipline, And The Computer Science Curriculum, Shane Brown

University Honors Theses

This thesis looks at the CLUB Homeschool Capstone project to argue that Portland State University's Computer Science curriculum should introduce testing and data quality discipline earlier and more intentionally than it does now. As team lead of a seven-person team, I coordinated sprint planning, communicated with the sponsor, and developed custom Discourse plugins that enhanced an existing forum platform instead of creating a separate application database, as requested by the sponsor. The project's requirements document called for a formal testing plan, but our team lacked the practical experience to implement one. This gap became evident through my internships as a …

Machine Learning For Predictive Energy And Emissions Modeling Of Vehicles And Power Grids In The United States, S M Tanvir Faysal Alam Chowdhoury

Dissertations

The environmental benefits of electric vehicle (EV) adoption depend on more than replacing internal combustion engine vehicles with electric powertrains. EV adoption reshapes electricity demand, interacts with regional generation mixes, and influences travel behavior and congestion, creating a coupled transportation-energy system in which vehicle and power-plant emissions must be evaluated together. This dissertation develops machine-learning frameworks for predicting energy consumption and emissions from vehicles and power grids under rising EV adoption. The first component forecasts grid emissions from EV charging. Using simulation data from NREL's Cambium database, a Prophet-based time-series framework predicts carbon dioxide, nitrous oxide, and methane emission rates …

Configuring Agentic Ai Coding Tools: An Exploratory Study, Matthias Galster, Seyedmoein Mohsenimofidi, Jai Lal Lulla, Muhammad Auwal Abubakar, Christoph Treude, Sebastian Baltes

Research Collection School Of Computing and Information Systems

Agentic AI coding tools increasingly automate software development tasks. Developers can configure these tools through versioned repository-level artifacts such as Markdown and JSON files. We present a systematic analysis of configuration mechanisms for agentic AI coding tools, covering Claude Code, GitHub Copilot, Cursor, Gemini, and Codex. We identify eight configuration mechanisms spanning from static context to executable and external integrations and, in an empirical study of 2,853 GitHub repositories, examine whether and how they are adopted, with a detailed analysis of Context Files, Skills, and Subagents. First, Context Files dominate the configuration landscape and are often the sole mechanism in …

Anomaly Management In Unmanned Aerial Vehicles: A Systematic Literature Review, Ivan Tan Wei Han, Christopher M. Poskitt, Lingxiao Jiang, Lwin Khin Shar

Research Collection School Of Computing and Information Systems

Unmanned Aerial Vehicles (UAVs) are increasingly deployed in safety-critical applications such as logistics, surveillance, disaster response, and urban air mobility. While their autonomy enables powerful capabilities, it also introduces vulnerabilities due to hardware faults, software defects, communication failures, and adversarial interference. This survey presents a comprehensive review of research studies closely related to UAV anomalies published between 2015 and 2025, covering 111 papers from academic and industrial sources. We introduce a unified five-pillar taxonomy—anomaly generation, prevention, detection, recovery, and analysis—that organizes existing work across the full anomaly management lifecycle. In contrast to prior surveys that focus primarily on detection algorithms, …

Survey On Learning-Based Dynamic Fault Localization: From Traditional Machine Learning To Large Language Models, Chunyan Liu, Yan Lei, Huan Xie, Jinping Wang, Yue Yu, David Lo

Research Collection School Of Computing and Information Systems

Learning-based dynamic fault localization techniques play a crucial role in the field of software engineering. These techniques dynamically execute test cases to meticulously extract useful knowledge from the execution information in the program, with the aim of identifying fault locations by leveraging machine learning, deep learning, and large language models. Currently, there is already a flourishing body of research that is intensely focused on learning-based dynamic fault localization. Research literature can be categorized into two main aspects for learning-based dynamic fault localization: data-based enhancements (i.e., the datasets) and model-based enhancements (i.e., the suspiciousness algorithms). Thus, we conduct an extensive literature …

Accountable Agents In Software Engineering: An Analysis Of Terms Of Service And A Research Roadmap, Christoph Treude

Research Collection School Of Computing and Information Systems

AI coding assistants and autonomous agents are becoming integral to software development workflows, reshaping how code is produced, reviewed, and maintained. While recent research has focused mainly on the capabilities and impacts of productivity of these systems, much less attention has been paid to accountability: who is responsible when agents generate, modify, or recommend code? In practice, accountability is defined through the Terms of Service (ToS) and related policy documents that govern the use of AI-powered development tools.In this vision paper, we present a comparative analysis of the Terms of Service for widely used AI coding assistants and agent-enabled development …

Operationalizing Ethics For Ai Agents: How Developers Encode Values Into Repository Context Files, Christoph Treude, Sebastian Baltes, Marc Cheong

Research Collection School Of Computing and Information Systems

As AI coding agents become embedded in software development workflows, developers are beginning to operationalize ethical principles by encoding behavioral rules into repository-level context files for AI agents, such as AGENTS.md files. Rather than examining the ethics of AI agents in the abstract, this vision paper investigates how ethics and values are already being translated for AI agents into actionable instructions that shape agent behavior. Through a preliminary investigation, we find that developers are already embedding guidance related to fairness, accessibility, sustainability, tone, and privacy. These artifacts function as a developer-authored governance layer, translating abstract principles into situated, natural-language directives …

A Dataset Of Agentic Ai Coding Tool Configurations, Matthias Galster, Seyedmoein Mohsenimofidi, Levi Böhme, Jai Lal Lulla, Muhammad Auwal Abubakar, Christoph Treude, Sebastian Baltes

Research Collection School Of Computing and Information Systems

Agentic AI coding tools such as Claude Code and OpenAI Codex execute multi-step coding tasks with limited human oversight. To steer these tools, developers create repository-level configuration artifacts (e.g., Markdown files) for configuration mechanisms such as Context Files, Skills, Rules, and Hooks. There is no curated dataset yet that captures these configurations at scale. This dataset, collected from open-source GitHub repositories, fills that gap. We selected 40,585 actively maintained repositories through metadata filtering, classified them using GPT-5.2 to identify 36,710 as belonging to engineered software projects, and systematically detected configuration artifacts in these repositories. The dataset covers 4,738 repositories across …

Pharmed. System Manual: Hololens Application, Eden Woldeselassie

Systems Manuals - 2026

This document provides the full life cycle of PharmEd HoloLens. PharmEd stands for Pharmacy Education. The overall document will go through the complete system manual by going over requirements, followed by design, how to install the application, how to upload the application to Microsoft store, troubleshooting and source code. The first section will explain the background, the existing problems and why the need to develop PharmEd.  Here techniques of requirement gathering and some statistics will elaborated. The following section discusses about functional requirements. The requirement section includes subtopics: functional and nonfunctional requirements for both -programmer and end user- and the …

Robot Remote Control Utility, Jeremy Cantu, Paul Uhlig

Systems Manuals - 2026

The purpose of this document is to describe the Robot Control Management Utility developed in the course of this graduate project. Information included in this document will include the background of the developed product, as well as the functional requirements, data structures, software modules, interface design, installation guide, and sample and troubleshooting guides.

E Classroom+, Ami B. Jariwala

Systems Manuals - 2026

A software platform that enhances many processes correlated with learning is called a learning management system (LMS). It is also known as a management software package that enables the delivery of learning content, resources and activities and also that handles the correlated administration operations. In classrooms, today, teachers, are being commenced with convenience to remodel learning from a traditional transmission model to a student-centered model where students are mostly responsible for their learning. The research conveys that in order to remodel learning, schools require to support a student-centered approach where students can be supported in finding, analyzing, organizing, evaluating, internalizing, …

Kta System Manual, Cayden Garcia

Systems Manuals - 2026

The purpose of this document is to explain the ins and outs of KTA. This includes but not limited to:

- The problem that colleges face when it comes to data analysis and collection

- The history of data analytics at a collegiate level

- Software and hardware requirements for KTA – Developer and User

- The overall design of KTA, how the software is structured and how the stack interacts with one another

- How to install KTA on your machine

- Sample Sessions – including issues that the user may run into and how to fix them

Smart Atm, Majid Hakeem

Systems Manuals - 2026

The Smart ATM is a new system that goal is to create a new experience for ATMs users by creating a different way of using the ATM. It would protect users from germs and bacteria. Instead of using buttons and touch screens, the main input for this system will be the motion sensor. To specify, the system uses Microsoft Kinect, which is the motion sensor for the Xbox One.

This document is a user guide, which is intended to give assistance to users for using the Smart ATM. This document contains an application overview, list of user requirements, the design …

Idioma Tutor, Oralia Mijares

Systems Manuals - 2026

The Idioma Tutor was developed specifically for individuals who desire to learn English through a non-traditional approach, eLearning. Idioma Tutor is an interactive game designed to strengthen individual’s English language adaptation, using an individual-learner approach. The game uses immediate feedback to provide self-analysis for learners. It captivates users and applies best-practices in eLearning and game development to retain and fully engage learners. This system manual outlines provides detailed information for using the Idioma Tutor. This system will be used as a catalyst to support the success of individuals who desire to learn the English language in a fun and interactive …

Solving Rubik's Cube By Using Artificial Intelligence, Polat Coban, Seth Reed

Systems Manuals - 2026

This document will detail a proposal to build a Rubik’s cube simulator, and a Rubik’s cube solver. It is broken into several sections which in turn are broken into subsections.

Improving Urban Search And Rescue Team Coordination Through Adaptive Context Awareness, Daniel Reyes Duran

Doctoral Dissertations and Master's Theses

Modern multi-agent Urban Search and Rescue (USAR) operations heavily rely on mobile geospatial Common Operating Pictures (COPs) to maintain team coordination and Situational Awareness (SA). However, the proliferation of high-frequency sensor telemetry at the tactical edge has introduced a data saturation paradox challenge: while information theoretically drives informed decision-making, unmanaged data surges induce increased operator cognitive overload and alert fatigue on mobile End-User Devices (EUDs), while downstream data-broadcasting models inherently strain edge processing and viewport environments.

To resolve these constraints, this dissertation presents a context-aware Value of Information (VoI) data-management framework integrated directly with a custom, event-driven Android Team Awareness …