Computer Sciences Commons^™

Understanding Bias And Fairness In Large Language Models: An Empirical Study, Joshua Johnson

Electrical Engineering and Computer Science Undergraduate Honors Theses

This thesis investigates demographic bias in large language models (LLMs) through the use of evaluating outcome disparities when utilized in decision making tasks as well as underlying associations that could contribute to furthering these disparities. Using profiles from the Adult dataset, we analyze how Gemini 2.0 Flash performs in an income prediction task using zero-shot and few-shot prompting methods. Our findings show that models exhibit measurable differences in demographic parity and false positive rates, with the use of few-shot prompting reducing these disparities. Alongside this line of testing, we tested associational bias in Qwen 2.5 using probability based association tests …

Adaptive Deep Learning In Physical Layer Applications, Ali Owfi

All Dissertations

Traditionally, signal processing models in communication systems have been designed based on solid foundations in statistics and information theory, often assuming linearity and optimizing for simplified models. However, real-world communication systems exhibit numerous imperfections and non-linearities that traditional linear models struggle to capture accurately. Deep Learning (DL)-based approaches, unconstrained by rigid mathematical models, have shown promise in optimizing system performance by accommodating specific hardware configurations and dynamic channel conditions as an alternative to the traditional methods. Despite all the recent research efforts on DL-based methods for physical layer applications, DL models have still not been widely applied to physical layer …

How Do Server-Based Architectures Compare To Serverless Architectures In Terms Of Development, Deployment Process, Scalability, And Cost-Effectiveness?, Natalio Fernandes Gomes

Honors Program Theses and Projects

Applications are tested in developers’ machines before deployment, since this is the standard practice that ensures the software is functioning as it should before deploying it to a standard practice that ensures the software is functioning as it should before deploying it to a specific environment. The deployment process consists of setting up the environmental requirements, infrastructure configuration on cloud or on-premises servers. Consequently, developers often run into the infamous "It works on my machine" problem. This issue is defined by the fact that applications function correctly in development environments but fail during deployment to production. Furthermore, scalability concerns and …

Privacy Preserving-Based Artificial Intelligence For Precision Agriculture, Partha P. Sengupta

Dissertations

The research work finds a solution to precision agriculture of cotton cultivation using artificial intelligence (AI) models. Two sets of model performance based on the application are selected namely a low resource and a high resource setting. This is because using drone surveys to capture images identifying the classes of stressed and unstressed cotton plantation requires limited model architecture and CPU based computation. Thus, traditional AI models were selected for low resource settings. Again, for high computation intensive models like transfer learning-convolution neural network (CNN) based architectures were grouped into high resource settings. There was another issue of class imbalance …

Evaluating Defi Vulnerabilities: The Role Of Bug Bounty Programs On Defi Software Supply Chain, Ping Fan Ke, Yi Meng Lau, Lingxiao Jiang

Research Collection School Of Computing and Information Systems

Decentralized finance (DeFi), powered by blockchain technology, enables peer-to-peer financial transactions without intermediaries. Despite rapid adoption, DeFi attracts malicious actors exploiting vulnerabilities. To mitigate risks, we propose a framework assessing entry points in the DeFi software supply chain: smart contracts, oracles/third-party feeds, user interfaces, off-chain storage, and crypto wallets. Applying this framework, we evaluate whether industry solutions—particularly bug bounty programs—adequately address these gaps. Our preliminary analysis indicates that most programs cover smart contract vulnerabilities (85.7%), followed by user interface issues (21.3%) and crypto wallet loopholes (11.9%). However, third-party risks, such as oracle feeds, are frequently deemed out of scope. This …

Cssa-Fusion: Channel Selective And Spatial Alignment Infrared-Visible Image Fusion, Zhen Li, Zhi Zeng, Zhongrui Xiao, Ming Wen, Zhiyuan Zhang, Yibin Tian

Research Collection School Of Computing and Information Systems

Infrared-visible image fusion aims to integrate complementary information from two modalities to generate images with enriched semantic content. However, existing methods often neglect two critical aspects: the design of a local–global feature enhancement architecture and spatial alignment. To address these challenges, we propose Channel Selective and Spatial Alignment Fusion (CSSA-Fusion), a novel framework composed of two synergistic modules. The first is a selective channel and redundancy suppression module, which introduces a dual-branch selective channel attention mechanism to jointly capture local saliency and global channel importance for enhanced feature representation, and an informativeness–redundancy separation strategy to suppress redundant information while preserving …

Coresets For Clustering Under Stochastic Noise, Lingxiao Huang, Zhize Li, Nisheeth K. Vishnoi, Runkai Yang, Haoyu Zhao

Research Collection School Of Computing and Information Systems

We study the problem of constructing coresets for $(k, z)$-clustering when the input dataset is corrupted by stochastic noise drawn from a known distribution. In this setting, evaluating the quality of a coreset is inherently challenging, as the true underlying dataset is unobserved. To address this, we investigate coreset construction using surrogate error metrics that are tractable and provably related to the true clustering cost. We analyze a traditional metric from prior work and introduce a new error metric that more closely aligns with the true cost. Although our metric is defined independently of the noise distribution, it enables approximation …

Towards Inclusive Digital Futures Of Cultural Heritage: Insights From A Critical Discourse Analysis Of Unesco Dialogues, Shiqing Huang, Keng Siau, Xiaoting Chen

Research Collection School Of Computing and Information Systems

Digital technologies are shaping many aspects of cultural heritage, but very little research has examined the implications of digital transformation. Drawing on concepts from Fairclough’s three-dimensional critical discourse analysis, this research examines the discourse using seven online dialogues (available on the UNESCO website) between 18 professionals who have different backgrounds and cultures to identify social practices related to the digital transformation of cultural heritage. We identify four digital transformation discourse types in professional dialogues: documentation, management, interpretation, and interaction. We also identify seven main groups: memory institutions including libraries, archives, and museums (LAMs), governments, international organizations, art and creative supporters, …

Zero Day Malware Detection With Alpha: Fast Dbi With Transformer Models For Real World Application, Matthew Gaber, Mohiuddin Ahmed, Helge Janicke

Research outputs 2022 to 2026

The effectiveness of an AI model in accurately classifying novel malware hinges on the quality of the features it is trained on, which in turn depends on the effectiveness of the analysis tool used. Peekaboo, a Dynamic Binary Instrumentation (DBI) tool, defeats malware evasion techniques to capture authentic behavior at the Assembly (ASM) instruction level. This behavior exhibits patterns consistent with Zipf's law, a distribution commonly seen in natural languages, making Transformer models particularly effective for binary classification tasks. We introduce Alpha, a framework for zero-day malware detection that leverages Transformer models, Support Vector Machines (SVMs) and ASM language features. …

Defeating Evasive Malware With Peekaboo: Extracting Authentic Malware Behavior With Dynamic Binary Instrumentation, Matthew Gaber, Mohiuddin Ahmed, Helge Janicke

Research outputs 2022 to 2026

The accuracy of Artificial Intelligence (AI) in malware detection is dependent on the features it is trained with, where the quality and authenticity of these features is dependent on the dataset and the analysis tool. Evasive malware, that alters its behavior in analysis environments, is challenging to extract authentic features from where widely used static and dynamic analysis tools have several limitations. However, Dynamic Binary Instrumentation (DBI) allows deep and precise control of the malware sample, thereby facilitating the extraction of authentic behavior from evasive malware. Considering the limitations of malware analysis for use with AI, this research had two …

Performance Enhancement For Rufa: Rapid Urban Forest Assessment, Nicholas Tan

Master's Theses

Urban forests are crucial to the livability and resilience of cities, offering critical ecosystem benefits such as air quality enhancement, temperature regulation, and biodiversity. Managing said urban forests is essential to ensure their sustainability and adaptability to rapidly changing environmental and climate conditions. The Rapid Urban Forest Assessment (RUFA) tool was developed to address the need for a standardized approach to evaluating and comparing urban and community forestry programs. By analyzing and aggregating tree-specific data across California, such as canopy cover, tree counts, and diversity scores, RUFA assigns a comprehensive urban forestry score for each city. This score allows for …

Accelerating Relationship Discovery In Chronic Lower Back Pain Through Knowledge Graph And Ontology Enhanced Large Language Models, Damon Lin

Master's Theses

Chronic lower back pain (cLBP) is a widespread public health burden linked to anxiety, depression, and opioid addiction. Interventions aimed at treating cLBP have shown minimal improvements in pain outcomes, leading researchers to reexamine our understanding of cLBP through constructing a causal model. However, constructing causal models through Randomized Controlled Trials are often unfeasible, and relying on domain expertise requires extensive and time-consuming research, posing a serious bottleneck for designing effective treatments. To accelerate this process, we apply Knowledge Graphs, Ontologies, and Large Language Models (LLMs) to aid researchers in determining possible causal relationships. First, we demonstrate how LLMs can …

An Analysis Of Neuroidal Memory Formation Within D. Melanogaster, Jerry Chang

Master's Theses

The Neuroidal model poses a neurobiologically plausible theory for modeling the brain. This symbolic network has been shown to capture realistic memorization behaviors using the JOIN algorithm. The model has also been recently improved by incorporating Watts-Strogatz small-worlds within its base structure. From the efforts of neuroscience researchers, we have access to the Drosophila melanogaster (D. melanogaster) fruit fly’s connectome, which has been found to also contain small-worlds in this thesis. By synthesizing the Ocellar Ganglion (OCG) region of Drosophila, we compare a digitized version of a real-world brain with an instance of the Neuroidal model. In this thesis, we …

A Comparative Evaluation Of Feedback Strategies For Enhancing Student Software Test Suite Writing Outcomes, Ashton Alonge

Master's Theses

Background and Context

Software testing is a fundamental component of computer science education, forming the basis for students’ ability to ensure program correctness and reliability. Despite its importance, many students struggle to design test cases that effectively expose faults and achieve meaningful test coverage. Traditional instructional approaches often emphasize code coverage metrics such as line or branch coverage, but these metrics may not adequately capture the quality of student tests. Mutation analysis, which measures how well tests detect small, artificial faults (mutants) introduced into the program, offers a potentially richer measure of test effectiveness. However, little is known about how …

Generalized Detection Of Animal Behavior Using Accelerometers, Alexander J. Arrieta

Master's Theses

Animal mounted sensors are becoming increasingly used to passively monitor both domestic and wild animals. Advances in lightweight accelerometer and GPS technology have allowed many animals to be fitted with high accuracy sensors for extended periods of time. This leads to new opportunities to study animal behavior without direct observation. However, interpreting the raw data is difficult due to the high volume and missing context of the information. Machine learning techniques excel at extracting information from raw data streams and are excellent candidates for processing the sensor data. However, due to large variance in how different animals execute the same …

Deep Learning With Kalman Filter, Rexford Julius Quaye

Electronic Theses and Dissertations

This thesis presents an extension of the Kalman filter to handle nonlinear and non-Gaussian systems. The standard Kalman filter is optimal under Gaussian assumptions but struggles with more complex noise models. This work introduces a novel loss function based on the Mahalanobis distance, which incorporates the covariance structure of measurement errors, enabling the filter to adapt to non-Gaussian scenarios. The neural network framework is applied to predict the system’s process model, while retaining the classical Kalman measurement update. The proposed methodology is demonstrated through examples of car position and rocket altitude tracking. The results show that the new approach performs …

Large Language Models (Llms) For Clinical Note Generation: International Classification Of Disease (Icd) Code, Knowledge Graph (Kg) And Prompt Evaluation, Ivan P. Makohon

Computer Science Theses & Dissertations

In the past decade, a surge in the amount of electronic health record (EHR) data in the United States occurred, driven by a favorable policy environment created by the Health Information Technology for Economic and Clinical Health (HITECH) Act of 2009 and the 21st Century Cures Act of 2016. Clinical notes for patients’ assessments, diagnoses, and treatments are captured in these EHRs in free-form text by physicians, who spend a considerable amount of time entering them. Manually writing these notes is time-consuming, increasing patient waiting times and potentially delaying diagnoses. Large language models (LLMs), such as GPT-4o, possess the ability …

On The Scalability Of Anisotropic Mesh Adaptation On Distributed And Shared Memory Architectures For Numerical Approximations, Kevin Mark Garner Jr.

Computer Science Theses & Dissertations

Mesh generation is a critical component in numerical approximations of Partial Differential Equations (PDEs). One such example includes Computational Fluid Dynamics (CFD), as CFD simulations in turn are crucial for applications in many industries, such as personalized healthcare and the design of aerospace vehicles. Generating high quality meshes for large-scale CFD problems presents a significant bottleneck in the CFD workflow. This dissertation proposes “fast,” parallel 3D mesh generation methodologies that are designed to leverage the concurrency offered by emerging High-Performance Computing (HPC) architectures. First, a distributed memory method is presented that integrates a sequential state-of-the-art isotropic, advancing front local reconnection-based …

Machine Learning For Anomaly Detection In Neural Network Security And Srf Cavities, Hal Ferguson

Electrical & Computer Engineering Theses & Dissertations

This dissertation explores the development and deployment of machine learning approaches to address critical challenges in anomaly detection across two distinct domains: neural network security in federated learning settings and cavity behavior analysis in particle accelerator operations at Jefferson Lab in Newport News, Virginia. Anomaly detection identifies deviations from expected patterns, safeguarding systems in cybersecurity, industry, and research against malicious activities and failures. This dissertation demonstrates how our machine learning approaches enhance detection accuracy and efficiency in both neural network security and industrial applications.

First, we investigate vulnerabilities in deep neural networks deployed in federated learning. Although federated learning preserves …

Sciteuq: Toward Uncertainty-Aware Complex Scientific Table Data Extraction And Understanding, Kehinde Ajayi

Computer Science Theses & Dissertations

Scientific tables report critical research insights, data, and findings for scientific progress. Because Portable Document Format (PDF) is the de facto standard format for scientific paper publishing, there has been an emerging need for an automatic method to extract data from PDF files. A significant fraction of scientific tables exhibit complex structure and content, making it challenging for machine learning tools to accurately extract the content directly from PDF files. Despite the advancements in Table Structure Recognition (TSR), automated extraction of data from complex scientific tables remains a challenge due to variations in table structures and contents. In this dissertation, …

Bias Testing And Mitigation In Llm-Based Code Generation, Dong Huang, Jie M. Zhang, Qingwen Bu, Xiaofei Xie, Junjie Chen, Heming Cui

Research Collection School Of Computing and Information Systems

As the adoption of LLMs becomes more widespread in software coding ecosystems, a pressing issue has emerged: does the generated code contain social bias and unfairness, such as those related to age, gender, and race? This issue concerns the integrity, fairness, and ethical foundation of software applications that depend on the code generated by these models but are underexplored in the literature. This paper presents a novel bias testing framework that is specifically designed for code generation tasks. Based on this framework, we conduct an extensive empirical study on the biases in code generated by five widely studied LLMs (i.e., …

Proverag: Provenance-Driven Vulnerability Analysis With Automated Retrieval-Augmented Llms, Reza Fayyazi, Stella Hoyos Trueba, Michael Zuzak, Jay Yang

Institute for Informatics and Applied Technology Scholarship

In cybersecurity, security analysts constantly face the challenge of mitigating newly discovered vulnerabilities in real-time, with over 300,000 vulnerabilities identified since 1999. The sheer volume of known vulnerabilities complicates the detection of patterns for unknown threats. While LLMs can assist, they often hallucinate and lack alignment with recent threats. Over 40,000 vulnerabilities have been identified in 2024 alone, which are introduced after most popular LLMs’ (e.g., GPT-5) training data cutoff. This raises a major challenge of leveraging LLMs in cybersecurity, where accuracy and up-to-date information are paramount. Therefore, we aim to improve the adaptation of LLMs in vulnerability analysis by …

Bridging The Gap Between Network Science And Network Systems To Identify And Mitigate Cyber Risk: Identify And Mitigate Backdoor Attacks On Graph Neural Networks And On Complex Systems, Sabah Ettahri

Electrical & Computer Engineering Projects for D. Eng. Degree

This doctoral project aims to bridge the gap between graph theory and network science to identify and mitigate cyber risk, represented as a CY-Triangular Network that connects different networks. The CY-Triangular Framework is a cybersecurity system that integrates graph theory and network science through an interoperable learning approach. The objective of this project is to bridge the gap between two domains: network science and network systems. Accordingly, it examines one representative network from each field, focuses on a complex system network, and explores Graph Neural Networks (GNNs). The connection between these domains lies in graph theory. This research demonstrates that …

Microgrid Assessment And Ml-Based Power System Faults Detection Leveraging Real-Time Co-Simulation, Diego Normando Gandara Mendez

Open Access Theses & Dissertations

The rapid growth of distributed energy resources (DERs) and the increasing reliance on data-driven decision making have reshaped the operational challenges of modern electric power systems. As microgrids become more prominent in distribution networks, utilities require methods that unify planning, control, and real-time situational awareness to ensure resilient operation under faulted or uncertain conditions. The goal of this MSEE thesis is to design and validate a latency-aware ML framework for rapid, reliable fault detection in distribution grids. To achieve the goal of the thesis, there are three specific objectives. Objective 1 evaluates optimized microgrid configurations under varying DER levels and …

Synthetic Dataset For Understanding Negation In Text-Guided Image Editing, Nhat-Tan Bui

Graduate Theses and Dissertations

Negation is a fundamental linguistic concept used by humans to convey information that they do not desire. Despite this, minimal research has focused on negation within text-guided image editing. This lack of research means that vision-language models (VLMs) for image editing may struggle to understand negation, implying that they struggle to provide accurate results. One barrier to achieving human-level intelligence is the lack of a standard collection by which research into negation can be evaluated. This thesis presents the first large-scale dataset, Negative Instruction (NeIn), for studying negation within instruction-based image editing. Our dataset comprises 366,957 quintuplets, i.e., source image, …

Cattlefever: An Automated Cattle Fever Estimation System, Trong Thang Pham, Ethan Coffman, Beth Kegley, Jeremy G. Powell, Jiangchao Zhao, Ngan Le

Electrical Engineering and Computer Science Faculty Publications and Presentations

Farmers face the critical challenge of monitoring cattle well-being for both ethical and economic success, relying on signals like body temperature and facial expressions to assess their animals' health. However, these indicators have traditionally relied on human observation with manual measurement, which is time-consuming and subjective. Despite this clear need, no automated system currently exists for monitoring cattle body temperature, and available datasets remain limited in scope. To address these challenges, we make two key contributions: (i) We introduce CattleFace-RGBT, a novel RGB-Thermal (RGB-T) Cattle Facial Landmark dataset consisting of 2,300 paired RGB and thermal images (4,600 images in total), …

The Impact Of Screentime In Childhood, Kyla P. Shirley

Informatics

The increased dependency on technological devices as a result of the digital age being upon us impacts a multitude of individuals from all age groups. For older groups, they might find an easier time navigating the world wide web due to their awareness of the potential dangers these digital spaces may bring. On the other hand, younger age groups are more susceptible to the dangers posed due to their lack of maturity which in turn makes them extremely vulnerable to being negatively impacted when using these electronic devices. The goal of this project was to generate awareness concerning screen time …

Discriminative And Generative Video Modeling, Anh Pha Nguyen

Graduate Theses and Dissertations

Video modeling stands at the core of modern computer vision, enabling progress in domains such as surveillance, autonomous driving, and instructional assistance. Yet the complexity of spatiotemporal dynamics, multimodal integration, and the need for scalable and generalizable models present significant challenges. This dissertation addresses these issues from three complementary perspectives: discriminative modeling, multimodal (vision + language) alignment, and generative approaches, contributing new methods, datasets, and paradigms for advancing video understanding. In the discriminative setting, we propose a domain-adaptive framework for crowd counting that employs entropy minimization and adversarial learning to improve cross-domain generalization, and introduce a single-stage global association method …

Predicting Stock Price Movement With Llm-Enhanced Tweet Emotion Analysis, An Vuong

Graduate Theses and Dissertations

Accurately predicting short-term stock price movement remains a challenging task due to the market’s inherent volatility and sensitivity to investor sentiment. In this thesis, we present a published paper that discusses a deep learning framework integrating emo- tion features extracted from tweet data with historical stock price information to forecast significant price changes on the following day. We utilize Meta’s LLaMA 3.1-8B-Instruct model to preprocess tweet data, thereby enhancing the quality of emotion features derived from three emotion analysis approaches: a transformer-based DistilRoBERTa classifier from the Hugging Face library and two lexicon-based methods using National Research Council Canada (NRC) resources. …

Privacy Protection In Cloud-Based Biometric Systems, Yatish Reddy Dubasi

Graduate Theses and Dissertations

The widespread adoption of server-based biometric authentication systems, often hosted in the cloud, has introduced significant privacy risks. While these systems offer convenience, they require storing sensitive biometric templates on remote servers, creating a high-value target for adversaries. Unlike passwords, compromised biometric data is immutable and cannot be reissued, leading to an irreversible loss of privacy. This threat is exacerbated by template inversion attacks, which can reconstruct a user's original biometric trait (e.g., a face image) from its stored feature vector. This dissertation addresses these critical privacy challenges by designing, implementing, and evaluating a suite of novel frameworks for privacy-preserving …