Computer Sciences Commons^™

Exploration Of Extended Chemical Reaction Networks, Ramiro Santos

Theses and Dissertations

Chemical Reaction Networks (CRNs) is a well-established model for analyzing distributed and concurrent systems. A central problem studied across CRNs is the reachability problem, which asks whether a target configuration can be obtained from a given initial configuration through a sequence of valid transitions. Classical CRNs are highly expressive but not Turing-universal; their reachability problem is Ackermann-complete, indicating extremely high computational complexity that nevertheless falls short of full universality.

In this thesis, we study Extended Models of Chemical Reaction Networks in which the dynamics of the system are modified. We analyze these models through two fundamental questions. First, simulation, we …

Open Multi-Agent Systems: The Free-Range-Zoo Framework And Moasei Competition, Ceferino J. Patino Iv

School of Computing: Dissertations, Theses, and Student Research

The field of multi-agent reinforcement learning (MARL) has made significant strides in addressing sequential decision-making problems under uncertainty. However, traditional MARL frameworks assume closed-world settings with fixed agent sets, static task distributions, and unchanging environment dynamics. This thesis presents two complementary contributions that advance the state of open-world multi-agent systems research: (1) the free-range-zoo framework, an open-source environment suite for MARL in open environments featuring dynamic agent populations, evolving task sets, and changing operational frames; and (2) the MOASEI Competition, an international benchmarking event that leverages free-range-zoo to evaluate how artificial agents handle openness in complex, partially observable domains. The …

Machine Learning Based Models For Simulation And Analysis Of Bulk Earth Melt System, Abin Shakya

LSU Doctoral Dissertations

Understanding the segregation of bulk Earth melt systems into metallic (core) and silicate (mantle) phases under high-pressure and high-temperature conditions is central to modeling Earth’s interior, yet relevant experimental and computational studies remain limited. This work develops a machine learning–based simulation pipeline that iteratively couples first-principles (quantum mechanical) calculations with neural network training to generate high-fidelity force fields. Using major-element Fe–Mg–Si–O melt systems, with and without H and N, as testbeds, we demonstrate that this framework enables large-scale molecular dynamics simulations at near first-principles accuracy. We further introduce a sequence of phase identification methods, progressing from statistical binning of elemental …

Scenarioxp: A Complete Scenario-Based Testing Framework For The Exploration And Exploitation Of Autonomous Vehicle Validation Scenarios, Quentin Goss

Doctoral Dissertations and Master's Theses

Today is an age of exciting emerging technology where cutting-edge research in autonomous vehicles (AVs) reduces the active human participation in driving and extends awareness beyond human limitations of perception and reaction, improving driving safety and quality of the user experience as a result. The ever-increasing complexity of these autonomous systems poses many challenges towards the validation and verification (V\&V) of these complex systems under time and resource constraints, as the use of artificial intelligence and also the intricacy of the operating environment means that these systems are also black-box and non-deterministic. Scenario-based V\&V testing of such systems, which involves …

Research On Uav Path Planning Method Based On Collision Free Trajectory, Jun Xie, Qi Zhang, Yanyun Peng, Haonan Shi, Dongyang Li, Xi Liu

Journal of System Simulation

Abstract: In view of the problems of poor quality, long time consumption, and low efficiency of the autonomous path planning method for unmanned aerial vehicles, a path planning method for unmanned aerial vehicles based on a collision-free trajectory was proposed. Under the premise of uncertainty, the time-related virtual points and collision threshold were set; the obstacle was modeled as a rectangle; the interest points around the rectangle were defined. The uncertainty optimization model between the unmanned aerial vehicles and the obstacle was established, so as to obtain the allowable edge of the collision-free trajectory of the unmanned aerial vehicles. The …

A Scalable Iteration Of The Horizon Simulation Framework Using Multithreading Techniques, Jason E. Beals

Master's Theses

The Horizon Simulation Framework (HSF) occupies a unique space in the modern aerospace modeling landscape, enabling flexible, modular modeling of mission-level agent behavior through an object-oriented, hierarchical design. HSF's hallmark breadth-first search scheduling algorithm explores a "multiverse" of possible mission execution pathways, enabling exhaustive evaluation of schedule combinations against user-defined heuristics.

As aerospace systems become increasingly complex, HSF faces critical challenges in establishing verifiable, deterministic behavior. The framework's core scheduling algorithm had not undergone systematic validation, leaving questions about temporal consistency, state management correctness, and reproducibility across different program executions. Furthermore, the exponential growth of schedule combinations creates computational bottlenecks …

A Virtual-Reality-Based Dental Simulator For Endodontics With Automated Formative Feedback, Yousef Salah Abo El Ela

Theses and Dissertations

Advancements in virtual reality (VR) and haptic technology are transforming the landscape of medical and dental education, offering new avenues for safe, immersive, and repeatable training experiences. Within dentistry, endodontics presents unique challenges for preclinical education due to anatomical complexity, limited access to extracted teeth, ethical concerns, and the shortcomings of conventional plastic models. Despite endodontics specific plastic teeth being available, they fall short of replicating the hardness of real extracted teeth, are relatively costly compared to generic plastic teeth, and are ultimately a disposable item which makes them inadequate as a sustainable long-term solution. Extracted teeth do a much …

Utilizing Computer Modeling To Optimize Electric Fields Within Xenon Time Projection Chambers, Miles Meloni

Honors Theses

XENONnT is a physics experiment designed with the goal of detecting dark matter particles. The detector is a time projection chamber; a series of charged electrodes creates an electric field, surrounding a central body filled with liquid and gaseous xenon. Photomultiplier tubes (PMTs), positioned on either end of the chamber, serve to detect light signals. We seek to minimize the root mean square of the electric field norms experienced by the PMTs. This quantity corresponds to the variance in the electric field observed by the PMTs. Establishing a consistent electric field is important to maintaining these sensitive components. The electric …

Can An Experienced Qualitative Researcher Distinguish Ai From Human Qualitative Content Analysis?, Alexandra T. Lucas, Jianna Ramos, Maria Bajwa, Aaron Calhoun, Mark W. Scerbo, Janice C. Palaganas

Psychology Faculty Publications

Background

Artificial intelligence (AI) has become increasingly embedded in research workflows. Large language models (LLMs) are being used to code segments of text, organise codes into themes and interpret patterns within contexts. Recent comparisons between human and AI analyses demonstrate up to 80% thematic overlap, yet humans consistently exhibit deeper interpretive integration and contextual understanding. This study assesses whether experienced researchers can distinguish between entirely human-generated and AI-generated qualitative content analyses of a simulation debriefing.

Methods

We conducted a qualitative descriptive study comparing human-generated qualitative content analysis (QCA) with ChatGPT-4o-generated QCA using a single focus group transcript on emotion management …

Real-Time Immersive Wildfire Simulation: A Game Engine Approach, Jake Bova

Graduate Student Theses, Dissertations, & Professional Papers

Wildfires are growing in frequency, size, and severity, placing escalating demands on firefighting resources and putting lives, property, and ecosystems at risk. Accurate prediction of fire behavior is critical to suppression planning, evacuation decisions, and firefighter training, yet the operational models that fire managers rely upon face a persistent tradeoff. High-fidelity physics-based models capture fire–atmosphere interactions faithfully but are computationally expensive, often running far slower than real time on CPU hardware, while faster empirical models sacrifice the dynamic coupling between a fire and the wind field it generates. Furthermore, most existing tools produce abstract, two-dimensional outputs that offer limited visual …

Cyber-Physical Framework For Smart Paint Manufacturing: Hybrid Integration Of Plc And Recipe Management Simulation, Stephen A. Michael, Anas M. Atieh, Emmanuel Nkwocha, Nathir A. Rawashdeh

Michigan Tech Publications

This study investigates the implementation of Industry 4.0 paradigms in the context of smart paint manufacturing, focusing on process control and recipe management through the integration of Ignition SCADA, a Siemens programmable logic controller (PLC), and a MySQL Workbench database. The developed architecture employs Ignition as an interoperable communication interface that facilitates bidirectional data exchange between the PLC and the database, thereby establishing a cyber-physical system for automated monitoring and control. The digital recipe management module formalizes paint formulations into parameterized datasets specifying paint and solvent ingredient ratios, process variables, and operational constraints, which are executed autonomously by the control …

Universal Systems Simulation Via Constraint Hypergraphs With Applications To Digital Twins, John Morris

All Dissertations

The characterization of systems encompasses a variety of modeling frameworks designed to capture specific behaviors and components of various system domains. Whatever the framework, the core elements of a system representation are the information of the system and a description of how that information is related. The relations in deterministic systems are functions, which, when composed to form executable processes, can be used to simulate system data. A declarative modeling framework is one that encodes mechanisms for preparing these simulations within the model structure, allowing an external agent to form the execution processes required for a given context. To date, …

Predicting Simulation Times For Multiphase Thermal-Hydraulic Models, Andrew Yule, Andrew Taylor

SMU Data Science Review

Addressing the challenge of computationally intensive OLGA

simulations in the oil and gas industry, a machine learning framework is

developed for accurate runtime prediction. A specialized feature extraction

pipeline identifies key parameters—such as simulation time, time step,

number of branches, and section count—from OLGA input files that serve as

high-impact predictors. Multiple predictive models, including regression,

tree-based ensembles, and neural networks, are implemented to validate

accuracy and robustness. Results reveal that prioritizing simulations based on

predicted runtimes optimizes licensing resources and reduces operational

costs, making real-time scheduling more efficient. This research demonstrates

the effectiveness of data-driven runtime prediction in enhancing …

Research On The Truth, Function And Common Principles Of Simulation, Haohua Xu, Bin Xiao, Yunhao Cui

Journal of System Simulation

Abstract: Simulation applications are becoming increasingly widespread and have a greater impact, while the theoretical foundation of simulation is relatively weak. This article provides a new definition of simulation by analyzing the common activities of simulation, which can include both virtual and real simulation forms; referring to Popper's three worlds theory, this paper discusses the objective authenticity of simulation from a philosophical perspective; From a methodological perspective, this paper elaborates on the methodological characteristics of simulation as an indirect cognitive object, revealing its significance in integrating human-machine intelligence and promoting knowledge evolution. It also discusses the common principles of simulation, …

Autonomous Uav Swarm Formation Utilizing Gradient-Driven Contour Mapping For Radiation Source Localization, Edgar Amalyan

UNLV Theses, Dissertations, Professional Papers, and Capstones

This thesis presents a drone swarm for radiation mapping to aid source localization. The Department of Energy advocates employing UAVs for this task, but existing approaches remain inefficient and impractical in real-world scenarios. Three custom drones are built and flight-tested. A control algorithm to follow a contour, a constant-intensity path, is designed using a gradient fit. By knowing the source’s direction, the drone swarm can fly in the optimal trajectory at every step, leaving nothing to assumption. A program is created that implements formation flight and autonomous navigation. It is tested via a software-in-the-loop simulation utilizing radiation sources and detectors …

Current Situation Of Simulation Course Offerings In Colleges And Universities In China And Abroad, Xiaogang Qiu, Zhengqiu Zhu, Kai Xu, Guanghong Gong

Journal of System Simulation

Abstract: As fundamental teaching units, courses serve as vital carriers of disciplinary knowledge transmission and critical bridges for converting research outcomes into educational content. The construction of simulation courses plays a pivotal role in developing the simulation discipline. The inaugural "Intelligence+ " symposium on simulation discipline and specialty construction focused on exploring the current state of simulation courses and pedagogy in China while examining future development directions. This report presented the key findings and discussions from the symposium regarding simulation courses and pedagogy. The analysis covered four parts: first, an overview of simulation course offerings and characteristics at European and …

Enhancing Fishnet For Wireless Network Simulation, Cameron J. Mcclure-Coleman

Computer Science and Software Engineering

This report documents the senior project focused on enhancing the Fishnet network simulation library used in Cal Poly’s CPE 464 (Introduction to Computer Networks) course. The primary goal was to implement features for simulating wireless networks and introducing discrete-event simulation (DES) capabilities to increase computational efficiency. These enhancements aim to better support the curriculum transition as Cal Poly switches from quarters to semesters. The project successfully established foundational components for wireless network simulation, including node positioning in three-dimensional space, signal propagation modeling, multiple interface nodes, and wireless collision domains. While the complete implementation of discrete-event simulation and YAML configuration features …

A Critical Evaluation Of The Criticisms Against Neutrosophic Statistical Methods, Muhammad Aslam, Abdulrahman Alaita, Florentin Smarandache

Neutrosophic Systems with Applications

Neutrosophic statistical analysis has gained attention for incorporating the degree of indeterminacy when analyzing imprecise and interval data under uncertainty–-an aspect often overlooked by classical statistics, fuzzy statistical analysis, and interval statistics. Recently, critical discussions have emerged regarding the use and applications of neutrosophic statistics, with some questioning its usefulness and validity. In this paper, we present a critical assessment of the existing literature, focusing on areas where misunderstandings and misinterpretations of neutrosophic statistical methods have occurred. We also examine flawed comparisons made between the results of neutrosophic statistics and interval statistics. Furthermore, substantial issues have been identified in the …

Current Wind Simulation Techniques, Keegan J. Sims

Theses/Capstones/Creative Projects

Not much exists in the realm of wind simulation. For what does exist involves tornadoes, and even then that is stretched far and few between. Due to this we have a lot of room to explore, and figure things out. How do we simulate real time wind? My capstone project involves a simple wind algorithm, how does it compare to what does currently exist? This paper covers the papers about wind and how it it interacts with objects and itself.

Multiscale Integration Of Receptor-Ligand Dynamics Into Discrete And Continuous Tumor Growth Models With Application To Tyrosine Kinase Inhibitor Treatment, Romasa Qasim

Open Access Theses & Dissertations

The epidermal growth factor (EGF) receptor cascade plays a crucial role in the survival and proliferation of tumor cells. Tyrosine kinase inhibitors (TKIs) are a class of drugs that inhibit epidermal growth factor receptors (EGFRs), thereby preventing the downstream signal transduction. Despite their importance, models that link spatial receptor dynamics to tumor growth remain scarce. Further, TKIs act through selective mechanisms, inhibiting active, inactive, or all receptor states, which poses a challenge to traditional modeling approaches.

We propose to numerically study two mathematical models incorporating receptor-dynamics into cancer models to describe the impact of EGFR overexpression and TKIs. The first …

Divergence-Free Smoothed Particle Hydrodynamics In A Stream Digital Twin, Austin Hartley

All Theses

Digital Twins (DT) are being explored by the South Carolina (SC) water community to simulate how SC streams will flow at various water levels. Currently, a DT called Gilligan simulates these streams utilizing weakly-incompressible Smoothed Particle Hydrodynamics (SPH). This method does not strictly enforce incompressibility, which leads to unrealistic water flows and unwanted visual artifacts that require post-processing effects to hide. To address these problems and simulate more realistic water flows, the Gilligan stream logic is updated and a state-of-the-art SPH method that enforces incompressibility—Divergence-Free SPH (DFSPH)—is implemented within the Gilligan framework. DFSPH is able to make use of two …

Designing A Statistical Plan For Measuring Self-Efficacy Using A 2k Factorial Design​, Rachel A. Hart, Eugene H. Thompson

Mathematics, Computer Science & Statistics Presentations

This study focuses on designing a statistical plan that measures the effects of self-efficacy using a 2k factorial design. Specifically, we simulated data on physical, mental, spiritual, and social health, so we could focus on their interaction with self-efficacy. By using ANOVA to see the main and interaction effects, we can see the impact of individual autonomy on health. Our findings show the need for experimental data on the demographic of interest, peri-and post-menopausal women.

A Formal Simulation Model For Discrete Rate Simulation, Thomas J. Tracey

Electrical & Computer Engineering Theses & Dissertations

Simulation is an essential tool for virtualizing systems by creating a representative model of real or hypothetical systems and observing how they change over time. Two predominant simulation paradigms include Discrete Event Simulation (DES) and Continuous Simulation, which both have their strengths and weaknesses. DES does not handle continuous state variables, while continuous simulation handles continuous state variables but encounters errors where these variables have discrete changes in their behavior. This difficulty between the two predominant simulation paradigms prompted the creation of a new simulation paradigm to cover this gap: Discrete Rate Simulation (DRS). DRS as a simulation paradigm focuses …

Testing Autonomy: Hybrid Scenario Synthesis, Benjamin E. Hargis

Electrical & Computer Engineering Theses & Dissertations

Hybrid Scenario Synthesis merges static and adaptive techniques to generate interactions that rigorously assess autonomous performance under multi-factor testing. Multifactor scenarios employ multiple individual stimuli to rigorously test system responses in complex settings. Static Scenario Testing involves scripted test cases that simulate specific conditions or events. These scenarios represent typical situations an autonomous system might encounter. The benefits of static testing include early defect detection, focused review by trained experts, and efficiency. In multi-factor scenarios, however, statically defined scenario factors are not able to guarantee meaningful interactions as the presence of other factors may invalidate underlying assumptions regarding the system …

Emergency Response Digital Twin: Integrating Augmented Reality And Live Position Data With Simulation-Aided Decision-Making In Real-Time, Joseph Fuentes

Theses and Dissertations

With the growing use of simulation across industries, the digital twin remains an underexplored research area, particularly in emergency management and response. Its real-time updating capability is often overlooked due to the misconception that "digital twin" is merely a complex term for simulation. This paper highlights its distinctiveness through an evasion exercise involving two independent entities in a collocated environment. Using a highly integrated virtual environment (HIVE) and internet of things (IoT) devices, we link the physical system with an analytical simulation, demonstrating the impact of lag times in high-pressure scenarios. The computational model leverages agent-based modeling (ABM) and discrete-event …

Dynamic Loading Simulation Method For Large-Scale Spiking Neural Network, Jiawei Shen, Daye Cai, Guoqing Yang, Pan Lü, Hong Li

Journal of System Simulation

Abstract: To address the problem of high GPU memory requirements in large-scale spiking neural network simulation, a dynamic loading simulation method for large-scale spiking neural networks is proposed. This method uses data movement at the sub-network granularity and utilizes the host memory as a larger memory pool to reduce the limitation of GPU memory on the model simulation scale, enabling large-scale spiking neural network simulation on a single GPU computer. The pipeline acceleration technique is adopted to reduce the impact of data movement on simulation speed. The simulation of a million-scale neural network is achieved in a single GPU experimental …

Comparing In-Person, Standard Telehealth, And Remote Musculoskeletal Examination With A Novel Augmented Reality Exercise Game System: Pilot Cross-Sectional Comparison Study, Richard Wu, Keerthana Chakka, Sara Belko, Ninad Khargonkar, Kevin Desai, Balakrishnan Prabhakaran, Thiru Annaswamy

SKMC Student Presentations and Publications

BACKGROUND: Current telemedicine technologies are not fully optimized for conducting physical examinations. The Virtual Remote Tele-Physical Examination (VIRTEPEX) system, a novel proprietary technology platform using a Microsoft Kinect-based augmented reality game system to track motion and estimate force, has the potential to assist with conducting asynchronous, remote musculoskeletal examinations.

OBJECTIVE: This pilot study evaluated the feasibility of the VIRTEPEX system as a supplement to telehealth musculoskeletal strength assessments.

METHODS: In this cross-sectional pilot study, 12 study participants with upper extremity pain and/or weakness underwent strength evaluations for four upper extremity movements using in-person, telehealth, VIRTEPEX, and composite (telehealth plus VIRTEPEX) …

From Walking To Parkour: A Structured Survey Of Rl For Dynamic Skills In Legged Robots, Christopher Allred, Chandler Justice, Rosario Scalise, Yan Gu, Jonathan Clark, Mario Harper, Jason Pusey

Computer Science Student Research

This survey reviews recent advances in applying reinforcement learning (RL) to enable dynamic and ballistic motions in legged robots, including running, jumping, stair climbing, and parkour. Focusing on high-agility behaviors that challenge traditional control frameworks, we categorize foundational locomotion tasks and highlight the RL methods, such as Proximal Policy Optimization, curriculum learning, and hybrid model-based strategies that have proven effective. We discuss the key challenges in transferring learned policies to real-world robots, managing uncertainty, and integrating perception and proprioception. Drawing from over 150 recent works, we provide a structured taxonomy of objectives, algorithms, and platforms, and identify trends in simulation …

Simulation Of Annpet For Neural Network Training And System Performance Benchmarking, Pete Martone

Graduate Theses, Dissertations, and Problem Reports (ETD)

Monte Carlo (MC) simulations are often used to provide insight into complex physical phenomenon. They can generate realistic results without the necessity to construct costly and complex apparatus. The ultimate value of these simulations depend on how accurately the physics can be modeled and if a sufficient volume can be produced to account for statistical variance. In medical imaging device development, MC simulations of Positron Emission Tomography (PET) scanners have typically been used to model the performance of new systems. The imaging group in the Department of Radiology have developed a unique detector design for a pre- clinical PET scanner …

Linking Empirical Data And Numerical Simulation To Characterize Dynamic Fire Behavior Associated With Interacting Firelines, Marta Sergeevna Jerebets

Graduate Student Theses, Dissertations, & Professional Papers

Understanding fuel pattern-fire process relationships is key for predicting fire behavior and effects with follow-on benefits to proactive fire management and model validation. To characterize dynamic fire behavior, this thesis leverages empirical data and numerical simulation through two complementary studies.

In the first study, longwave thermal sensors aboard unmanned aerial systems (UAS) were used to capture fine-scale fire behavior in two experimental grass burns. A novel paired design was used to quantify the effects of fuel arrangement on fire behavior with 3.66 m diameter treatments cut to a height of 0.15 m. The treatments ephemerally reduced fire rate of spread …