Physical Sciences and Mathematics Commons^™

Equilibria And Synchrotron Stability In Two Energy Storage Rings, B. Dhital, Jean R. Delayen, Y. S. Derbenev, D. Douglas, Geoffrey A. Krafft, F. Lin, B. Morozov, Y. Zhang

Physics Faculty Publications

In a dual energy storage ring, the electron beam passes through two loops at markedly different energies E_{L}, and E_{H}, i.e., energies for low energy loop and high energy loop respectively. These loops use a common beamline where a superconducting linac at first accelerates the beam from EL to EH and then decelerates the beam from EH to EL in the next pass. There are two basic solutions to the equilibrium problems possible, i.e., ’Storage Ring’ (SR) equilibrium and ’Energy Recovery Linac’ (ERL) equilibrium. SR equilibrium mode more resembles the usual single loop storage ring with strong synchrotron motion and …

Electron-Ion Collider Performance Studies With Beam Synchronization Via Gear-Change, I. Neththikumara, Geoffrey A. Krafft, Y. Roblin, Balša Terzić

Physics Faculty Publications

Beam synchronization of the future electron-ion collider (EIC) is studied with introducing different bunch numbers in the two colliding beams. This allows non-pairwise collisions between the bunches of the two beams and is known as "gear-change", whereby one bunch of the first beam collides with all other bunches of the second beam, one at a time. Here we report on the study of how the beam dynamics of the Jefferson Lab Electron Ion collider concept is affected by the gear change. For this study, we use the new GPU-based code (GHOST). It features symplectic one-turn maps for particle tracking and …

Beam-Beam Effect: Crab Dynamics Calculation In Jleic, He Huang, Vasiliy Morozov, Yves Roblin, Amy Sy, Fanglei Lin, Yuhong Zhang, Balša Terzić, Salvador Sosa, Isurumali Neththikumara

Physics Faculty Publications

The electron and ion beams of a future Electron Ion Collider (EIC) must collide at an angle for detection, machine and engineering design reasons. To avoid associated luminosity reduction, a local crabbing scheme is used where each beam is crabbed before collision and de-crabbed after collision. The crab crossing scheme then provides a head-on collision for beams with a non-zero crossing angle. We develop a framework for accurate simulation of crabbing dynamics with beam-beam effects by combining symplectic particle tracking codes with a beam-beam model based on the Bassetti-Erskine analytic solution. We present simulation results using our implementation of such …

Instability Of Flux Flow And Production Of Vortex-Antivortex Pairs By Current-Driven Josephson Vortices In Layered Superconductors, Ahmad Sheikhzada, Alex Gurevich

Physics Faculty Publications

We report numerical simulations of the nonlinear dynamics of Josephson vortices driven by strong dc currents in layered superconductors. Dynamic equations for interlayer phase differences in a stack of coupled superconducting layers were solved to calculate a drag coefficient η(J) of the vortex as a function of the perpendicular dc current density J. It is shown that Cherenkov radiation produced by a moving vortex causes significant radiation drag increasing η(v) at high vortex velocities v and striking instabilities of driven Josephson vortices moving faster than a terminal v_c. The steady-state flux flow breaks down at ν > v …

Neuroprotective Effects Of Melatonin And Celecoxib Against Ethanol-Induced Neurodegeneration: A Computational And Pharmacological Approach, Lina T. Al Kury, Alam Zeb, Zain Ul Abidin, Nadeem Irshad, Imran Malik, Arooj Mohsin Alvi, Atif Ali Khan Khalil, Sareer Ahmad, Muhammad Faheem, Arif Ullah Khan, Fawad Ali Shah, Shupeng Li

All Works

© 2019 Al Kury et al. This work is published and licensed by Dove Medical Press Limited. Purpose: Melatonin and celecoxib are antioxidants and anti-inflammatory agents that exert protective effects in different experimental models. In this study, the neuroprotective effects of melatonin and celecoxib were demonstrated against ethanol-induced neuronal injury by in silico, morphological, and biochemical approaches. Methods: For the in silico study, 3-D structures were constructed and docking analysis performed. For in vivo studies, rats were treated with ethanol, melatonin, and celecoxib. Brain samples were collected for biochemical and morphological analysis. Results: Homology modeling was performed to build 3-D …

Evaluating An Educational Cybersecurity Playable Case Study, Tanner West Johnson

Theses and Dissertations

The realities of cyberattacks have become more and more prevalent in the world today. Due to the growing number of these attacks, the need for highly trained individuals has also increased. Because of a shortage of qualified candidates for these positions, there is an increasing need for cybersecurity education within high schools and universities. In this thesis, I discuss the development and evaluation of Cybermatics, an educational simulation, or playable case study, designed to help students learn and develop skills within the cybersecurity discipline.

This playable case study was designed to allow students to gain an understanding of the field …

Comparing Performance Of Gene Set Test Methods Using Biologically Relevant Simulated Data, Richard M. Lambert

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Today we know that there are many genetically driven diseases and health conditions. These problems often manifest only when a set of genes are either active or inactive. Recent technology allows us to measure the activity level of genes in cells, which we call gene expression. It is of great interest to society to be able to statistically compare the gene expression of a large number of genes between two or more groups. For example, we may want to compare the gene expression of a group of cancer patients with a group of non-cancer patients to better understand the genetic …

Performance Indicators Analysis Inside A Call Center Using A Simulation Program, Ditila Ekmekçiu, Markela Muça, Adrian Naço

International Journal of Business and Technology

This paper deals with and shows the results of different performance indicators analyses made utilizing the help of Simulation and concentrated on dimensioning problems of handling calls capacity in a call center. The goal is to measure the reactivity of the call center’s performance to potential changes of critical variables. The literature related to the employment of this kind of instrument in call centers is reviewed, and the method that this problem is treated momentarily is precisely described. The technique used to obtain this paper’s goal implicated a simulation model using Arena Contact Center software that worked as a key …

Thermal Performance Of Pcm-Glazing Unit Under Moderate Climatic Conditions, Anna Wieprzkowicz, Dariusz Heim

International Building Physics Conference 2018

Considering physical properties, transparent or translucent building components like windows or glazing facades are the weakest elements of building envelope. The heat transfer coefficient of such elements is approximately four times higher than for opaque partitions, which causes considerable increase of heat loss during winter. In summer relatively high solar transmittance is a source of heat gains which results in undesirable overheating. Application of phase change materials in glazing components affects its thermal performance by the increase of its heat capacity and decrease of solar heat gains, with regard to the current physical state of the PCM. The aim of …

Considerations On The Thermal Modelling Of Insulated Metal Panel Systems, Ligia Moga, Ioan Moga

International Building Physics Conference 2018

The very strict regulations imposed by the European directives regarding low energy consumptions of buildings imposes the availability of thermal and energy efficient solutions for the building envelope. One common solution is given by insulated metal penal systems, which are typically used for industrial buildings but lately also used for other types of buildings (e.g. residential buildings, hotels, hospitals). These types of solutions must be properly addressed from the thermal modelling and simulation point of view considering a different thermal behaviour due to its detail components. For insulated metal penal systems the typical calculations are done by considering only the …

Challenges And Techniques For Simulating Line Emission, Karen P. Olsen, Andrea Pallottini, Aida Wofford, Marios Chatzikos, Mitchell Revalski, Francisco Guzmán, Gergö Popping, Enrique Vázquez-Semadeni, Georgios E. Magdis, Mark L. A. Richardson, Michaela Hirschmann, William J. Gray

Physics and Astronomy Faculty Publications

Modeling emission lines from the millimeter to the UV and producing synthetic spectra is crucial for a good understanding of observations, yet it is an art filled with hazards. This is the proceedings of “Walking the Line”, a 3-day conference held in 2018 that brought together scientists working on different aspects of emission line simulations, in order to share knowledge and discuss the methodology. Emission lines across the spectrum from the millimeter to the UV were discussed, with most of the focus on the interstellar medium, but also some topics on the circumgalactic medium. The most important quality of a …

Deep Reinforcement Learning For Autonomous Search And Rescue, Juan Gonzalo Cárcamo Zuluaga

Masters Theses

Unmanned Aerial Vehicles (UAVs) are becoming more prevalent every day. In addition, advances in battery life and electronic sensors have enabled the development of diverse UAV applications outside their original military domain. For example, Search and Rescue (SAR) operations can benefit greatly from modern UAVs since even the simplest commercial models are equipped with high-resolution cameras and the ability to stream video to a computer or portable device. As a result, autonomous unmanned systems (ground, aquatic, and aerial) have recently been employed for such typical SAR tasks as terrain mapping, task observation, and early supply delivery. However, these systems were …

Predictions Generated From A Simulation Engine For Gene Expression Micro-Arrays For Use In Research Laboratories, Gopinath R. Mavankal, John Blevins, Dominique Edwards, Monnie Mcgee, Andrew Hardin

SMU Data Science Review

In this paper we introduce the technical components, the biology and data science involved in the use of microarray technology in biological and clinical research. We discuss how laborious experimental protocols involved in obtaining this data used in laboratories could benefit from using simulations of the data. We discuss the approach used in the simulation engine from [7]. We use this simulation engine to generate a prediction tool in Power BI, a Microsoft, business intelligence tool for analytics and data visualization [22]. This tool could be used in any laboratory using micro-arrays to improve experimental design by comparing how predicted …

Estimation Of The Burr Xii-Exponential Distribution Parameters, Gholamhossein Yari, Zahra Tondpour

Applications and Applied Mathematics: An International Journal (AAM)

The Burr XII distribution is one of the most important distributions in Survival analysis. In this article, we introduce the new wider Burr XII-G family of distributions. A special model in the new family called Burr XII-exponential distribution that has constant, decreasing and unimodal hazard rate functions is investigated. We discuss the estimation of this distribution parameters by maximum likelihood, three modifications of maximum likelihood and Bayes methods. In Bayes method, we use the uniform, triangular and Burr XII-uniform priors for posterior analysis and obtain Bayes estimations under two different loss functions. We obtain two approximations of the Bayes estimations, …

A Computational Model Of Team-Based Dynamics In The Workplace: Assessing The Impact Of Incentive-Based Motivation On Productivity, Josef Di Pietrantonio

Electronic Theses and Dissertations

Large organizations often divide workers into small teams for the completion of essential tasks. In an effort to maximize the number of tasks completed over time, it is common practice for organizations to hire workers with the highest level of education and experience. However, despite capable workers being hired, the ability of teams to complete tasks may suffer if the workers' individual motivational needs are not satisfied.

To explore the impact of incentive-based motivation on the success of team-based organizations, we developed an agent-based model that stochastically simulates the proficiency of 100 workers with varying abilities and motive profiles to …

A Model For Bioaugmented Anaerobic Granule, Amitesh Mahajan

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

In this study, we have created a simulation model which is concerned about digesting cellulose, as a major component of microalgae in a bioreactor. This model is designed to generate a computational model that simulates the process of granulation in anaerobic sludge and aims to investigate scenarios of possible granular bioaugmentation. Once a mature granule is formed, protein is used as an alternative substrate that will be supplied to a mature granule. Protein, being a main component of cyanobacteria, will promote growth and incorporation of a cell type that can degrade protein (selective pressure). The model developed in a cDynoMiCs …

A Study Of Flight Simulation Training Time, Aircraft Training Time, And Pilot Competence As Measured By The Naval Standard Score, Aaron D. Judy

Doctor of Education (Ed.D)

The purpose of the study was to investigate the relationships between US Navy T-45C flight simulation training time, actual aircraft training time, and intermediate and advanced jet pilot competence as measured by the Naval Standard Score (NSS). Examining the relationships between US Navy T-45C flight simulation time and actual aircraft flight time may provide further information on flight simulation training versus actual aircraft training to aviation authorities, flight instructors, the military aviation community, the commercial aviation community, and academia. The study was non-experimental, correlational, causal-comparative with an emphasis upon the establishment of mathematic and predictive relationships using archival data from …

Evaluation Of Acoustic Telemetry Grids For Determining Aquatic Animal Movement And Survival, Richard T. Kraus, Christopher M. Holbrook, Christopher S. Vandergoot, Taylor R, Stewart, Matthew D. Faust, Douglas A. Watkinson, Colin Charles, Mark A. Pegg, Eva C. Enders, Charles C. Krueger

School of Natural Resources: Faculty Publications

1. Acoustic telemetry studies have frequently prioritized linear configurations of hydrophone receivers, such as perpendicular from shorelines or across rivers, to detect the presence of tagged aquatic animals. This approach introduces unknown bias when receivers are stationed for convenience at geographic bottlenecks (e.g. at the mouth of an embayment or between islands) as opposed to deployments following a statistical sampling design.

2. We evaluated two-dimensional acoustic receiver arrays (grids: receivers spread uniformly across space) as an alternative approach to provide estimates of survival, movement and habitat use. Performance of variably spaced receiver grids (5–25 km spacing) was evaluated by simulating …

Implementation Of Unmanned Aerial Vehicles Reporting Plume Cloud Concentration Values In A 3d Simulation Environment, Emily Catherine Novak

Browse all Theses and Dissertations

Unmanned aerial vehicles, or UAVs, have the potential to vastly improve plume cloud tracking at low cost. Plume clouds can be produced from blast mining, chemical warfare, unintended man-made disasters, and natural causes. This thesis provides implementation of the capability to simulate a 3D environment in which UAVs are individually controlled and each report a plume's concentration value at a specific location. It leverages existing industry standard technologies, including the PX4 autopilot system, the Gazebo simulation environment, the Robot Operating System (ROS), and QGroundControl. The provided system integrates the existing tools with a plume model plug-in that provides simulated plume …

A Model-Based Transformation Framework For Designing And Analyzing Wireless Sensor Networks, Raoudha Saida, Yessine Hadj Kacem, Mohammed Sulaiman Bensaleh, Mohamed Abid

Turkish Journal of Electrical Engineering and Computer Sciences

Wireless sensor networks (WSNs) comprise resource-constrained (e.g., memory, processing, and energy) sensor nodes that are deployed in different areas and are able to monitor environmental conditions. Simulation has been widely used in order to evaluate the network performance. In this context, software designers need to evaluate, refine, and validate high-level models for WSN applications at early stages of development via simulation tools, in particular for WSN applications supporting energy-harvesting devices. In the present paper, we propose a model-based transformation framework that allows the modeling and simulation of a WSN system supporting energy-harvesting capabilities. In this proposal, we start from a …

Dynamic Simulation Of The Cad Model In Simmechanics With Multiple Uses, Jiri Zátopek, Zdenek Ú?Ední?Ek, José Machado, João Sousa

Turkish Journal of Electrical Engineering and Computer Sciences

When designing a mechatronic system, several steps are taken into account. One of the main steps is the design of a CAD model representing the physical part of the system, and another major point is the development of the mathematical model necessary for the respective controller design. This paper combines both design steps and shows the advantages of using this approach. First, a CAD model is created considering the kinematic and dynamic behavior of the system as well as respective material properties. This CAD model is, in parallel, used for both purposes: as the main basis for developing a mathematical …

Design And Development Of Simulation-Based Instruction On Meaningful Use And Interprofessionalism Core Competencies In A Healthcare Team-Based Learning Environment, Elizabeth Oviawe

CCAC Theses and Dissertations

Policymakers and electronic health records (EHR) experts agree that healthcare professionals lack proficiency in meaningful use of EHRs. This competency gap can result in increased medical errors. It is essential for health professions graduates to acquire skill sets that are adaptable to any electronic health information technologies including the EHRs to facilitate work process and information access. Simulation as an instructional method to create transformative learning experiences has shown promise in the medical profession. In simulations, learners are able to engage in real-life scenarios and practice their cognitive, affective, and psychomotor skills in a safe environment.

The goal was to …

Monte Carlo Estimates Of Evaluation Metric Error And Bias: Work In Progress, Mucun Tian, Michael D. Ekstrand

Computer Science Faculty Publications and Presentations

Traditional offline evaluations of recommender systems apply metrics from machine learning and information retrieval in settings where their underlying assumptions no longer hold. This results in significant error and bias in measures of top-N recommendation performance, such as precision, recall, and nDCG. Several of the specific causes of these errors, including popularity bias and misclassified decoy items, are well-explored in the existing literature. In this paper we survey a range of work on identifying and addressing these problems, and report on our work in progress to simulate the recommender data generation and evaluation processes to quantify the extent of …

Scenario Development For Unmanned Aircraft System Simulation-Based Immersive Experiential Learning, Nickolas D. Macchiarella, Alexander J. Mirot

Journal of Aviation/Aerospace Education & Research

Application of scenario-based training can serve as practical means of educating remote pilots and sensor operators as they seek professional levels of knowledge. Both education and training can build upon time-tested training and simulation methodologies that apply simulators in settings that mirror real-world operations. Embry-Riddle Aeronautical University’s unmanned aircraft system (UAS) program curriculum is rooted in immersive simulation that offers students an experiential learning experience that is aimed to develop higher-order thinking skills. Skills that are critical to professional levels of performance. The degree program builds from basic application skills to critical thinking skills by using immersive scenario-based training in …

Simulating Pulsar Signal Scattering In The Interstellar Medium With Two Distinct Scattering Phenomena, Adam P. Jussila

Honors Papers

In this thesis, I discuss the creation of a simulation that attempts to reconstruct secondary spectra of pulsars by simulating the scattering in the interstellar medium. For the simulation, we focus on two distinct scattering phenomena, namely a coherent deflection at grazing incidence along a sheet of material, and a random deflection due to a random-walk type process through clouds of material. The simulation focuses on a representation known as a Wavefield Representation that our group has not utilized to this extent before, and it allowed us to understand the physics behind these scattering events in new depths. The final …

Water Dynamics And The Effect Of Static And Alternating Electric Fields, Mohammadmahdi Shafiei Alavijeh

Theses and Dissertations

Having a net dipole moment, water molecules tend to align with an external electric field. The re-orientation of water molecules to align with the field direction can result in structural and dynamic changes in liquid water. Studying these changes can help us to understand the role of an E-field in many biological systems, chemical reactions, and many technological advancements.

In short, the application of static electric fields causes molecules to stay aligned with the field, so, fewer hydrogen bonds break, and molecules have slower dynamics. This type of field can be used when the mobility of water molecules needs to …

Two Notes On A Piano, Samuel Thomas

Williams Honors College, Honors Research Projects

In an increasingly digital world, the analog tends to be neglected in exchange for the convenience and precision of digital devices. However, many analog systems exhibit physical phenomena that can be difficult to reproduce digitally. The purpose of this project is to explore the piano and parts of its sonic character that are not currently accounted for in digital systems. Specifically, when multiple notes are being propagated on a soundboard, they affect each other’s tone because each one changes the state of the soundboard. The effect is evident in the partials of each note: the partials (not quite harmonics but …

Understanding The Nature Of Nanoscale Wetting Through All-Atom Simulations, Oliver Evans

Williams Honors College, Honors Research Projects

The spreading behavior of spherical and cylindrical water droplets between 30Å and 100Å in radius on a sapphire surface is investigated using all-atom molecular dynamics simulations for durations on the order of tens of nanoseconds. A monolayer film develops rapidly and wets the surface, while the bulk of the droplet spreads on top of the monolayer, maintaining the shape of a spherical cap. Unlike previous simulations in the literature, the bulk radius is found to increase to a maximum value and receed as the monolayer continues to expand. Simple time and droplet size dependence is observed for monolayer radius and …

Virtual And Hands-On Laboratory Environments In The Science Classroom: The Effect Of Prior Science Achievement, Michael A. Marino Ed.D.

Theses & Dissertations: Molloy Faculty

A study was conducted to investigate the extent to which previous science achievement affected student performance in traditional hands-on and virtual laboratory environments. A sample of 70 first-year college students was employed in a counterbalanced A-B-A-B experimental design. The study spanned four instructional weeks of laboratory experimentation alternating traditional and virtual learning environments. For each of the four labs, students were given a pre-test designed to measure content knowledge, administered the intervention of virtual labs, and this was followed by an identical post-test. Prior science achievement was assessed using a general chemistry assessment exam. T-tests revealed that student performance did …

Room Temperature Measurements Of Higher Order Modes For The Sps Prototype Rf Dipole Crabbing Cavity, Subashini De Silva, P. Berrutti, Jean R. Delayen, N. A. Huque, Hyekyoung Park

Physics Faculty Publications

LHC High Luminosity Upgrade will be developing two local crabbing systems to increase the luminosity of the colliding bunches at the ATLAS and CMS experiments. One of the crabbing systems uses the rf-dipole cavity design that will be crabbing the beam in the horizontal plane. The fully integrated crabbing cavity has two higher order mode couplers in damping those excited modes. Currently two sets of HOM couplers have been fabricated at Jefferson Lab for prototyping and testing with the LARP crabbing cavities. This paper presents the measurements of the higher order modes with the prototype HOM couplers carried out at …