Physical Sciences and Mathematics Commons^™

Simulation Study Of The Magnetized Electron Beam, S.A.K. Wijethunga, J.F. Benesch, Jean R. Delayen, F. E. Hannon, Geoffrey A. Krafft, M. A. Poelker, R. Suleiman

Physics Faculty Publications

Electron cooling of the ion beam plays an important role in electron ion colliders to obtain the required high luminosity. This cooling efficiency can be enhanced by using a magnetized electron beam, where the cooling process occurs inside a solenoid field. This paper compares the predictions of ASTRA and GPT simulations to measurements made using a DC high voltage photogun producing magnetized electron beam, related to beam size and rotation angles as a function of the photogun magnetizing solenoid and other parameters.

Comparison Of The Performance Of Simple Linear Regression And Quantile Regression With Non-Normal Data: A Simulation Study, Marjorie Howard

Theses and Dissertations

Linear regression is a widely used method for analysis that is well understood across a wide variety of disciplines. In order to use linear regression, a number of assumptions must be met. These assumptions, specifically normality and homoscedasticity of the error distribution can at best be met only approximately with real data. Quantile regression requires fewer assumptions, which offers a potential advantage over linear regression. In this simulation study, we compare the performance of linear (least squares) regression to quantile regression when these assumptions are violated, in order to investigate under what conditions quantile regression becomes the more advantageous method …

Design And Implementation Of A Stand-Alone Tool For Metabolic Simulations, Milad Ghiasi Rad

School of Computing: Dissertations, Theses, and Student Research

In this thesis, we present the design and implementation of a stand-alone tool for metabolic simulations. This system is able to integrate custom-built SBML models along with external user’s input information and produces the estimation of any reactants participating in the chain of the reactions in the provided model, e.g., ATP, Glucose, Insulin, for the given duration using numerical analysis and simulations. This tool offers the food intake arguments in the calculations to consider the personalized metabolic characteristics in the simulations. The tool has also been generalized to take into consideration of temporal genomic information and be flexible for simulation …

Experimental Design And Data Analysis In Computer Simulation Studies In The Behavioral Sciences, Michael Harwell, Nidhi Kohli, Yadira Peralta

Journal of Modern Applied Statistical Methods

Treating computer simulation studies as statistical sampling experiments subject to established principles of experimental design and data analysis should further enhance their ability to inform statistical practice and a program of statistical research. Latin hypercube designs to enhance generalizability and meta-analytic methods to analyze simulation results are presented.

Performance Evaluation Of Confidence Intervals For Ordinal Coefficient Alpha, Heather J. Turner, Prathiba Natesan, Robin K. Henson

Journal of Modern Applied Statistical Methods

The aim of this study was to investigate the performance of the Fisher, Feldt, Bonner, and Hakstian and Whalen (HW) confidence intervals methods for the non-parametric reliability estimate, ordinal alpha. All methods yielded unacceptably low coverage rates and potentially increased Type-I error rates.

Optimal Layout For A Component Grid, Michael W. Ebert

Computer Science and Software Engineering

Several puzzle games include a specific type of optimization problem: given components that produce and consume different resources and a grid of squares, find the optimal way to place the components to maximize output. I developed a method to evaluate potential solutions quickly and automated the solving of the problem using a genetic algorithm.

A Coverage Metric To Aid In Testing Multi-Agent Systems, Jane Ostergar Linn

Theses and Dissertations

Models are frequently used to represent complex systems in order to test the systems before they are deployed. Some of the most complicated models are those that represent multi-agent systems (MAS), where there are multiple decision makers. Brahms is an agent-oriented language that models MAS. Three major qualities affect the behavior of these MAS models: workframes that change the state of the system, communication activities that coordinate information between agents, and the schedule of workframes. The primary method to test these models that exists is repeated simulation. Simulation is useful insofar as interesting test cases are used that enable the …

Multi-Step Tokenization Of Automated Clearing House Payment Transactions, Privin Alexander

USF Tampa Graduate Theses and Dissertations

Since its beginnings in 1974, the Automated Clearing House (ACH) network has grown into one of the largest, safest, and most efficient payment systems in the world. An ACH transaction is an electronic funds transfer between bank accounts using a batch processing system.

Currently, the ACH Network moves almost $43 trillion and 25 billion electronic financial transactions each year. With the increasing movement toward an electronic, interconnected and mobile infrastructure, it is critical that electronic payments work safely and efficiently for all users. ACH transactions carry sensitive data, such as a consumer's name, account number, tax identification number, account holder …

The Simulation, Design, And Fabrication Of Optical Filters, John-Michael Juneau

Graduate Theses - Physics and Optical Engineering

The purpose of this thesis is to create a model for designing optical filters and a method for fabricating the designed filters onto a multitude of substrates, as well as to find ways to optimize this process. The substrates that were tested were quartz, glass slides, polycarbonate, and polyethylene terephthalate (PET). This work will account for variations in the deposition process and substrate cleaning method, in order to optimize the performance of the final optical filter. Several different filters were simulated and then fabricated. These filters included 3, 5, and 7-layer Bragg reflectors, 11-layer narrowband filters, and some variations of …

Parallelization Of A Three-Dimensional Full Multigrid Algorithm To Simulate Tumor Growth, Dylan Goodin, Chin F. Ng, Hermann B. Frieboes

Commonwealth Computational Summit

We present the performance gains of an openMP implementation of a fully adaptive nonlinear full multigrid (FMG) algorithm to simulate three-dimensional multispecies desmoplastic tumor growth on computer systems of varying processing capabilities. The FMG algorithm is applied to solve a recently published thermodynamic mixture model that uses a diffuse interface approach with fourth-order reaction-advection-diffusion PDEs (Cahn-Hilliard-type equations) that are coupled, nonlinear, and numerically stiff. The model includes multiple cell species and extracellular matrix (ECM), with adhesive and elastic energy contributions in chemical potential terms, as well as including blood and lymphatic vessels represented as continuous vasculatures. Advection-reaction-diffusion PDEs are employed …

2-D Electrophoresis Modeling Of Multienzyme Cutting Of Polypeptides, Howard Mayes

Theses

2-Dimensional Electrophoresis is one of the tools in the identification of proteins by molecular weight and pH. The display of molecular weight allows the researcher to quickly identify whether a specific protein or peptide string is in the sample. The pH measurement allows even better resolution between different species in the sample. The MultiEnzyme ElectroPhoresis (MEEP) program tries to model that by providing a graph that displays separated protein strings by both molecular weight and pH. The ability to cleave the protein with 43 different enzyme variations allows the researcher to analyze appropriate enzymes to isolate a protein subsequence before …

Time Varying Parameter Estimation Scheme For A Linear Stochastic Differential Equation, Olusegun Michael Otunuga

Mathematics Faculty Research

In this work, an attempt is made to estimate time varying parameters in a linear stochastic differential equation. By defining mk as the local admissible sample/data observation size at time tk, parameters and state at time tk are estimated using past data on interval [tk−mk+1, tk]. We show that the parameter estimates at each time tk converge in probability to the true value of the parameters being estimated. A numerical simulation is presented by applying the local lagged adapted generalized method of moments (LLGMM) method to the stochastic differential models governing prices of energy …

Full Simulation For The Qweak Experiment At 1.16 And 0.877 Gev And Their Impact On Extracting The Pv Asymmetry In The N→Δ A Transition, Hend Abdullah Nuhait

Doctoral Dissertations

The Qweak project is seeking to find new physics beyond the Standard Model. It is aimed to measure the weak charge of the proton, which has never been measured, at 4% precision at low momentum transfer. The experiment is performed by scattering electrons from protons and exploiting parity violation in the weak interaction at low four-momentum transfer.

In this experiment, two measurements were considered: which are elastic and inelastic. The elastic is to measure the proton's weak charge. In addition, the inelastic asymmetry measurement, which will extract the low energy constant dΔ. That measurement works in the neutral current …

Multi-Gpu Accelerated High-Fidelity Simulations Of Beam-Beam Effects In Particle Colliders, Naga Sai Ravi Teja Majeti

Computer Science Theses & Dissertations

Numerical simulation of beam-beam effects in particle colliders are crucial in understanding and the design of future machines such as electron-ion colliders (JLEIC), linac-ring machines (eRHIC) or LHeC. These simulations model the non-linear collision dynamics of two counter rotating beams in particle colliders for millions of turns. In particular, at each turn, the algorithm simulates the collision of two directed beams propagating at different speeds with different number of bunches each. This leads to non-pair-wise collisions of beams with different number of bunches that results in an increase in the computational load proportional to the number of bunches in the …

How To Enable Future Faster Payments? An Evaluation Of A Hybrid Payments Settlement Mechanism, Zhiling Guo, Yuanzhi Huang

Research Collection School Of Computing and Information Systems

In the era of Fintech innovation and e-commerce, faster settlement of massive retail transactions is crucial for business growth and financial system stability. However, speeding up payments settlement can create periodic liquidity shortfalls to banks which would incur high cost of funds in the settlement process. We propose a new hybrid settlement mechanism design that integrates features of real-time gross settlement, deferred net settlement, and central queue management structure. The hybrid mechanism is managed by an intermediary and is particularly suitable to settle large volume of small-value retail payments. We evaluate the mechanism using computer experiments and simulation. We find …

Game Specific Approaches To Monte Carlo Tree Search For Dots And Boxes, Jared Prince

Mahurin Honors College Capstone Experience/Thesis Projects

In this project, a Monte Carlo tree search player was designed and implemented for the child’s game dots and boxes, the computational burden of which has left traditional artificial intelligence approaches like minimax ineffective. Two potential improvements to this player were implemented using game-specific information about dots and boxes: the lack of information for decision-making provided by the net score and the inherent symmetry in many states. The results of these two approaches are presented, along with details about the design of the Monte Carlo tree search player. The first improvement, removing net score from the state information, was proven …

Eulerian On Lagrangian Cloth Simulation, Kyle C. Piddington

Master's Theses

This thesis introduces a novel Eulerian-on-Lagrangian (EoL) approach for simulating cloth. This approach allows for the simulation of traditionally difficult cloth scenarios, such as draping and sliding cloth over sharp features like the edge of a table. A traditional Lagrangian approach models a cloth as a series of connected nodes. These nodes are free to move in 3d space, but have difficulty with sliding over hard edges. The cloth cannot always bend smoothly around these edges, as motion can only occur at existing nodes. An EoL approach adds additional flexibility to a Lagrangian approach by constructing special Eulerian on Lagrangian …

A Semiparametric Estimation For The Nonlinear Vector Autoregressive Time Series Model, Rahman Farnoosh, Mahtab Hajebi, Seyed J. Mortazavi

Applications and Applied Mathematics: An International Journal (AAM)

In this paper, the nonlinear vector autoregressive model is considered and a semiparametric method is proposed to estimate the nonlinear vector regression function. We use Taylor series expansion up to the second order which has a parametric framework as a representation of the nonlinear vector regression function. After the parameters are estimated through the least squares method, the obtained nonlinear vector regression function is adjusted by a nonparametric diagonal matrix, and the proposed diagonal matrix is also estimated through the nonparametric smooth-kernel approach. Estimating the parameters can yield the desired estimate of the vector regression function based on the data. …

Simulating Within-Vector Generation Of The Malaria Parasite Diversity, Lauren M. Childs, Olivia F. Prosper

Mathematics Faculty Publications

Plasmodium falciparum, the most virulent human malaria parasite, undergoes asexual reproduction within the human host, but reproduces sexually within its vector host, the Anopheles mosquito. Consequently, the mosquito stage of the parasite life cycle provides an opportunity to create genetically novel parasites in multiply-infected mosquitoes, potentially increasing parasite population diversity. Despite the important implications for disease transmission and malaria control, a quantitative mapping of how parasite diversity entering a mosquito relates to diversity of the parasite exiting, has not been undertaken. To examine the role that vector biology plays in modulating parasite diversity, we develop a two-part model framework …

Validating A Universal Model Of Particle Transport Lengths With Laboratory Measurements Of Suspended Grain Motions, Robert C. Mahon, Brandon Mcelroy, Suleyman Naqshband

Earth and Environmental Sciences Faculty Publications

t The mechanics of sediment transport are of fundamental importance for fluvio-deltaic morphodynamics. The present study focuses on quantifying particle motions and trajectories across a wide range of flow conditions. In particular, a continuous model is presented that predicts particle travel distances for saltation and suspension based on Rouse number and relative grain roughness. By utilizing a series of eight video cameras in a plexiglass flume direct measurements of the distributions of particle travel distances (excursion lengths) were obtained. To this end, experiments were carried out in dark under black lights with fluorescent painted plastic and quartz sand particles. For …

Electrodynamical Modeling For Light Transport Simulation, Michael G. Saunders

Undergraduate Honors Theses

Modernity in the computer graphics community is characterized by a burgeoning interest in physically based rendering techniques. That is to say that mathematical reasoning from first principles is widely preferred to ad hoc, approximate reasoning in blind pursuit of photorealism. Thereby, the purpose of our research is to investigate the efficacy of explicit electrodynamical modeling by means of the generalized Jones vector given by Azzam [1] and the generalized Jones matrix given by Ortega-Quijano & Arce-Diego [2] in the context of stochastic light transport simulation for computer graphics. To augment the status quo path tracing framework with such a modeling …

On The Simulation And Mitigation Of Anisoplanatic Optical Turbulence For Long Range Imaging, Russell C. Hardie, Daniel A. Lemaster

Electrical and Computer Engineering Faculty Publications

We describe a numerical wave propagation method for simulating long range imaging of an extended scene under anisoplanatic conditions. Our approach computes an array of point spread functions (PSFs) for a 2D grid on the object plane. The PSFs are then used in a spatially varying weighted sum operation, with an ideal image, to produce a simulated image with realistic optical turbulence degradation. To validate the simulation we compare simulated outputs with the theoretical anisoplanatic tilt correlation and differential tilt variance. This is in addition to comparing the long- and short-exposure PSFs, and isoplanatic angle. Our validation analysis shows an …

Characterizing And Improving Power And Performance In Hpc Networks, Taylor L. Groves

Computer Science ETDs

Networks are the backbone of modern HPC systems. They serve as a critical piece of infrastructure, tying together applications, analytics, storage and visualization. Despite this importance, we have not fully explored how evolving communication paradigms and network design will impact scientific workloads. As networks expand in the race towards Exascale (1×10^18 floating point operations a second), we need to reexamine this relationship so that the HPC community better understands (1) characteristics and trends in HPC communication; (2) how to best design HPC networks to save power or enhance the performance; (3) how to facilitate scalable, informed, and dynamic decisions within …

Trim Tuning Of Sps-Series Dqw Crab Cavity Prototypes, S. Verdú-Andrés, J. Skaritka, Q. Wu, A. Ratti, S. Baurac, C. H. Boulware, T. Grimm, J. Yancey, W. Clemens, E. A. Mcewen, H. Park

Physics Faculty Publications

The final steps in the manufacturing of a superconducting RF cavity involve careful tuning before the final welds to match the target frequency as fabrication tolerances may introduce some frequency deviations. The target frequency is chosen based on analysis of the shifts induced by remaining processing steps including acid etching and cool down. The baseline fabrication of a DQW crab cavity for the High Luminosity LHC (HL-LHC) envisages a first tuning before the cavity subassemblies are welded together. To produce a very accurate final result, subassemblies are trimmed to frequency in the last machining steps, using a clamped cavity assembly …

Modeling Net Energy Balance Of Ethanol Production From Native Warm Season Grasses, Prabodh Illukpitiya, Chandra Reddy, Ankit Bansal

Agricultural and Environmental Sciences Faculty Research

There has been an increasing interest in the use of perennial grasses as potential feedstock for ethanol production. The characteristics which make perennial grasses attractive for bioenergy feedstock development initiative are their high yield potential and the high contents of lignin and cellulose. The objective of the study is to model energy input and output and simulate Net Energy Value (NEV) of producing ethanol from native warm season grasses. According to simulated results, the mean NEV of ethanol production from native warm season grasses considered in the analysis was positive. Mean NEV for switchgrass and eastern gammagrass was higher compared …

A Simulation Of Anthropogenic Mammoth Extinction, Matthew Klapman

Undergraduate Honors Papers

There are multiple hypotheses as to why the Columbian Mammoth (Mammuthus columbi) and other megafauna in North America went extinct relatively recently and relatively quickly. The most popular of which are disease, climate change, meteorite strikes, and over hunting by humans [2, 9]. There is evidence to show that a combination of factors contributed to the megafaunal extinction, but ”overkill” explores the idea that early humans migrated onto the continent and then hunted the mammoths and other megafauna to extinction. The overkill hypothesis was first proposed by anthropologist Paul Martin in 1973 [8]. Evidence from radiocarbon dating shows that the …

A Predictor Analysis Framework For Surface Radiation Budget Reprocessing Using Design Of Experiments, Patricia Allison Quigley

Engineering Management & Systems Engineering Theses & Dissertations

Earth’s Radiation Budget (ERB) is an accounting of all incoming energy from the sun and outgoing energy reflected and radiated to space by earth’s surface and atmosphere. The National Aeronautics and Space Administration (NASA)/Global Energy and Water Cycle Experiment (GEWEX) Surface Radiation Budget (SRB) project produces and archives long-term datasets representative of this energy exchange system on a global scale. The data are comprised of the longwave and shortwave radiative components of the system and is algorithmically derived from satellite and atmospheric assimilation products, and acquired atmospheric data. It is stored as 3-hourly, daily, monthly/3-hourly, and monthly averages of 1°x1° …

Using The Vehicle Routing Problem To Reduce Field Completion Times With Multiple Machines, Hasan Seyyedhasani, Joseph S. Dvorak

Biosystems and Agricultural Engineering Faculty Publications

The Vehicle Routing Problem (VRP) is a powerful tool used to express many logistics problems, yet unlike other vehicle routing challenges, agricultural field work consists of machine paths that completely cover a field. In this work, the allocation and ordering of field paths among a number of available machines has been transformed into a VRP that enables optimization of completion time for the entire field. A basic heuristic algorithm (a modified form of the common Clarke-Wright algorithm) and a meta-heuristic algorithm, Tabu Search, were employed for optimization. Both techniques were evaluated through computer simulations in two fields: a hypothetical basic …

Controlling Viral Outbreaks: Quantitative Strategies, Anna Mummert, Howard Weiss

Mathematics Faculty Research

Preparing for and responding to outbreaks of serious livestock infectious diseases are critical measures to safeguard animal health, public health, and food supply. Almost all of the current control strategies are empirical, and mass culling or “stamping out” is frequently the principal strategy for controlling epidemics. However, there are ethical, ecological, and economic reasons to consider less drastic control strategies. Here we use modeling to quantitatively study the efficacy of different control measures for viral outbreaks, where the infectiousness, transmissibility and death rate of animals commonly depends on their viral load. We develop a broad theoretical framework for exploring and …

Simulation Of Anisoplanatic Imaging Through Optical Turbulence Using Numerical Wave Propagation With New Validation Analysis, Russell C. Hardie, Jonathan D. Power, Daniel A. Lemaster, Douglas R. Droege, Szymon Gladysz, Santasri Bose-Pillai

Electrical and Computer Engineering Faculty Publications

We present a numerical wave propagation method for simulating imaging of an extended scene under anisoplanatic conditions. While isoplanatic simulation is relatively common, few tools are specifically designed for simulating the imaging of extended scenes under anisoplanatic conditions. We provide a complete description of the proposed simulation tool, including the wave propagation method used. Our approach computes an array of point spread functions (PSFs) for a two-dimensional grid on the object plane. The PSFs are then used in a spatially varying weighted sum operation, with an ideal image, to produce a simulated image with realistic optical turbulence degradation. The degradation …