Botany Commons^™

Three New Species Of Basidiomycetous Fungi From India, Babita Kumari, Narinder Singh Atri, Ramesh Chandra Upadhyay

Turkish Journal of Botany

In this paper, 2 lepiotaceous mushrooms [Lepiota indica sp. nov. and Lepiota attenuispora sp. nov. (Agaricaeae)] and 1 Limacella magna sp. nov. in the Amanitaceae are described. Lepiota indica has scurfy brownish carpophores, minute spores, and chains of golden brown-walled pileal elements. Lepiota attenuispora has a shaggy appearance, an appendiculate veil of the pileus margin, and a stipe sheathed with soft cottony scales. Limacella magna is a species characterized by prominent brown scales on the pileus and stipe, presence of a glutinous layer, and a trichodermal pileus cutis.

Leaf Traits Within Communities: Context May Affect The Mapping Of Traits To Function, Jennifer L. Funk, William K. Cornwell

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

The leaf economics spectrum (LES) has revolutionized the way many ecologists think about quantifying plant ecological trade-offs. In particular, the LES has connected a clear functional trade-off (long-lived leaves with slow carbon capture vs. short-lived leaves with fast carbon capture) to a handful of easily measured leaf traits. Building on this work, community ecologists are now able to quickly assess species carbon-capture strategies, which may have implications for community-level patterns such as competition or succession. However, there are a number of steps in this logic that require careful examination, and a potential danger arises when interpreting leaf-trait variation among species …

Sfa Gardens Newsletter, Winter 2013, Sfa Gardens, Stephen F. Austin State University

SFA Gardens Newsletters

No abstract provided.

The Clubroot Pathogen (Plasmodiophora Brassicae) Influences Auxin Signaling To Regulate Auxin Homeostasis In Arabidopsis, Linda Jahn, Stefanie Mucha, Sabine Bergmann, Cornelia Horn, Paul E. Staswick, Bianka Steffens, Johannes Siemens, Jutta Ludwig-Müller

Department of Agronomy and Horticulture: Faculty Publications

The clubroot disease, caused by the obligate biotrophic protist Plasmodiophora brassicae, affects cruciferous crops worldwide. It is characterized by root swellings as symptoms, which are dependent on the alteration of auxin and cytokinin metabolism. Here, we describe that two different classes of auxin receptors, the TIR family and the auxin binding protein 1 (ABP1) in Arabidopsis thaliana are transcriptionally upregulated upon gall formation. Mutations in the TIR family resulted in more susceptible reactions to the root pathogen. As target genes for the different pathways we have investigated the transcriptional regulation of selected transcriptional repressors (Aux/IAA) and transcription …

The Physiology Of Invasive Plants In Low-Resource Environments, Jennifer L. Funk

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

While invasive plant species primarily occur in disturbed, high-resource environments, many species have invaded ecosystems characterized by low nutrient, water, and light availability. Species adapted to low-resource systems often display traits associated with resource conservation, such as slow growth, high tissue longevity, and resource-use efficiency. This contrasts with our general understanding of invasive species physiology derived primarily from studies in high-resource environments. These studies suggest that invasive species succeed through high resource acquisition. This review examines physiological and morphological traits of native and invasive species in low-resource environments. Existing data support the idea that species invading low-resource environments possess traits …

The Effects Of 11 Yr Of Co2 Enrichment On Roots In A Florida Scrub-Oak Ecosystem, Frank Day, Rachel E. Schroeder, Daniel B. Stover, Alisha L. P. Brown, John R. Butnor, John Dilustro, Bruce A. Hungate, Paul Dijkstra, Benjamn D. Duval, Troy J. Seiler

Biological Sciences Faculty Publications

• Uncertainty surrounds belowground plant responses to rising atmospheric CO₂ because roots are difficult to measure, requiring frequent monitoring as a result of fine root dynamics and long-term monitoring as a result of sensitivity to resource availability.
• We report belowground plant responses of a scrub-oak ecosystem in Florida exposed to 11yr of elevated atmospheric CO₂ using open-top chambers. We measured fine root production, turnover and biomass using minirhizotrons, coarse root biomass using ground-penetrating radar and total root biomass using soil cores.
• Total root biomass was greater in elevated than in ambient plots, and the absolute difference was larger than …

Phylogenetic Analysis Of The Genus Stachys Sect. Eriostomum (Lamiaceae) In Turkey Based On Nuclear Ribosomal Its Sequences, Ekrem Dündar, Ekrem Akçi̇çek, Tuncay Di̇rmenci̇, Şaki̇r Akgün

Turkish Journal of Botany

Morphological revision and phylogenetic analysis of Stachys L. sect. Eriostomum (Hoffmanns. & Link) Dumort. (Lamiaceae) based on nuclear ribosomal internal transcribed spacer (nrITS) sequences were conducted. Morphological analysis confirmed the previous arrangements of 3 subsections, i.e. Germanicae R.Bhattacharjee, Creticae R.Bhattacharjee, and Spectabiles R.Bhattacharjee, while suggesting some status changes and new records that were also confirmed by the phylogenetic analysis. The phylogenetic analysis suggested, however, some arrangements different from those indicated by morphology. Two subsections, i.e. Creticae and Germanicae-Spectabiles, instead of 3 were observed in the phylogenetic tree. The tree also suggested that 9 Stachys cretica L. subspecies form a polyphyletic …

Leaf Epidermis Morphology Of Some Onosma (Boraginaceae) Species From Turkey, Öznur Ergen Akçi̇n, Gülcan Şenel, Yaşar Akçi̇n

Turkish Journal of Botany

The leaf epidermis of 14 Onosma L. species was examined by light and scanning electron microscopy (SEM). The leaf characters studied showed some variations. Morphologic features of the epidermal cells such as shape, structure of the anticlinal walls, stomatal size, outer stomatal rims, peristomatal rims, and apertures were summarised in the examined taxa. It was found that these characters are variable in the genus but usually they are stable within a species. Epidermal cells of the investigated taxa are polygonal, elongated, or irregular. Anticlinal walls of the epidermal cells are generally straight to curved and repand. Apertures are long, ellipsoidal, …

Comparative Morphological, Epidermal, And Anatomical Studies Of Pinus Roxburghii Needles At Different Altitudes In The North-West Indian Himalayas, Satyendra Prakash Tiwari, Pradeep Kumar, Deepika Yadav, Devendra Kumar Chauhan

Turkish Journal of Botany

The aim of the present study was to understand the ecological adaptation of Pinus roxburghii Sarg. in the North-West Himalayan region. P. roxburghii needles showed morphological, epidermal, and anatomical variation at different altitudes. Needle length was negatively correlated with altitude. Stomatal characters like stomatal density, stomatal index, and guard cell lengths were found to be affected by environmental factors and showed a direct correlation with altitude. The results showed that potential conductance index was dependent on the climatic conditions of the habitat. The anatomical properties of needles exhibited variation from lower to higher elevation, especially in the number and position …

Analysis Of Airborne Pollen Grains In Denizli, Aykut Güvensen, Ali̇ Çeli̇k, Bülent Topuz, Müni̇r Öztürk

Turkish Journal of Botany

Airborne pollen distribution in Denizli Province was measured volumetrically during 2 consecutive years, 2005 and 2006, on a weekly basis. A total of 11,981 pollen grains/m^3 belonging to 42 taxa were determined. In 2005 the total was 5368 pollen grains/m^3 and in 2006 it was 6613 pollen grains/m^3. Among the taxa recorded, 26 belonged to arboreal and 16 to nonarboreal taxa. At the end of the 2 years total pollen counts comprised 79.68% arboreal, 19.48% nonarboreal, and 0.84% unidentified taxa. The number of pollen grains/m^3 among arboreal plants was as follows: Pinaceae (24.19%), Cupressaceae/Taxodiaceae (15.99%), Olea europaea (11.35%), Quercus spp. …

Spatial Pattern Analysis Of Peganum Harmala On The Salted Lower Chelif Plain, Algeria, Adda Ababou, Mohammed Chouieb, Abdelkader Bouthiba, Djamel Saidi, Mahfoud M'Hamedi Bouzina, Khalladi Mederbal

Turkish Journal of Botany

Peganum harmala L. (Zygophyllaceae), native to arid and semiarid rangeland, has been widely studied biochemically, pharmaceutically, and medicinally, but is largely unknown ecologically. In the lower Chelif, Algeria, this plant is largely present and shows a clear clumped pattern, which indicates the strong effects of environmental conditions. Our redundancy analysis showed that the geographic distribution of this species was positively correlated with sand and pH and negatively correlated with conductivity, Na^+, and clay. The Gaussian model suggested that 9.4 mmhos/cm conductivity and sand contents greater than 40% are optimum for this plant. The spatial distribution map obtained through the kriging …

Spindle Irregularities, Chromatin Transfer, And Chromatin Stickiness During Male Meiosis In Anemone Tetrasepala (Ranunculaceae), Pawan Kumar Rana, Puneet Kumar, Vijay Kumar Singhal

Turkish Journal of Botany

Detailed cytological investigations performed in Anemone tetrasepala Royle from the Pangi Valley revealed the presence of various irregularities (spindle irregularities, chromatin transfer, chromatin stickiness, and nonsynchronous condensation of chromatin material) for the first time in the species that existed at diploid level (2n = 14). Spindle irregularities resulted in dyads, triads, polyads, and micronuclei in sporads during microsporogenesis and variable sized pollen grains and reduced fertility in pollen grains (85.38%). Direct fusion among proximate meiocytes resulted in the formation of syncyte pollen mother cells. Such syncytes yielded jumbo-sized pollen grains that were surely of unreduced nature in their genetic constitution. …

Size-Fractionated Phytoplankton And Nutrient Dynamics In The Inner Part Of İzmir Bay, Eastern Aegean Sea, Serkan Kükrer, Hasan Baha Büyükişik

Turkish Journal of Botany

İzmir Bay has been one of most polluted bays of the Mediterranean for a long time. When the 'Big Channel Project' was completed in 2000, sewage flow into the bay ended. Hence, the influence of creeks, which are the only source of water transportation to the inner bay, was investigated in the current study. Monthly samples of creek water and seawater were taken. Basic water quality variables and nutrients were measured. In addition, the phytoplankton community was arrayed into size fractions to assess the contribution of each size fraction to biomass and pigment concentrations. Analyses showed that the creek waters …

Taxonomic Revision Of Silene (Caryophyllaceae) Sections Siphonomorpha, Lasiostemones, Sclerocalycinae, Chloranthae, Tataricae, And Otites In Turkey, Kemal Yildiz, Ali̇ Hi̇kmet Çirpici

Turkish Journal of Botany

Forty-four Silene L. taxa belonging to the sections Siphonomorpha Otth, Lasiostemones Boiss., Sclerocalycinae Boiss., Chloranthae Rohrb., Tataricae Chowdhuri, and Otites (Adams.) Otth were studied. The Silene specimens used in the study were collected from different localities between 2005 and 2007. Their conservation status, phytogeographical regions, and distribution in Turkey were determined. Detailed drawings of the general view and flower from each species were added to the study. As a result of these detailed investigations, the conditions of some species having taxonomic problems were re-examined, and suggestions were proposed. The results produced 3 taxa that are new to science and 2 …

Anther Development And Cytochemistry In Asphodelus Aestivus (Asphodelaceae), Fi̇li̇z Vardar, Işil İsmai̇loğlu, Meral Ünal

Turkish Journal of Botany

Asphodelus aestivus Brot. (Asphodelaceae) anthers were analysed to provide a detailed understanding of the events that lead to pollen grain development, accompanied by cytochemical observations at different ontogenic stages. An anther locule of A. aestivus was bordered by 4 different layers: the tapetum, the middle layer, the endothecium, and the epidermis. At the tetrad stage, secretory tapetal cells enlarged maximally, while they showed degeneration at the young microspore stage. During the course of the degeneration, vacuolisation and reduction in the volume were conspicuous. Cytochemical analysis revealed that tapetal cells presented an intense reaction with regard to protein, insoluble polysaccharides, and …

Three Remarkable New Moss Records For South-West Asia From Northern Turkey, Güray Uyar, Muhammet Ören

Turkish Journal of Botany

Grimmia anomala Schimp., Pohlia filum (Schimp.) Mårtensson, and Hookeria acutifolia Hook. & Grev. are noteworthy moss species reported here for the first time in South-West Asia from specimens collected in north-eastern and north-western Turkey. The diagnostic characters, habitat preferences, illustrations, and updated ranges of the treated species are given together with notes comparing them with those of related taxa.

Succession Of Epiphytic Bryophytes In Cedrus Libani Forest On The Meydan Plateau (Aladağ), Tülay Ezer, Recep Kara

Turkish Journal of Botany

The succession of epiphytic bryophytes was investigated in Cedrus libani A.Rich. forest on the Meydan Plateau (Aladağ). A total of 19 taxa (16 mosses, 3 liverworts) were recorded in 90 sampling relevés, 4 dm^2 each. Index of ecological significance (IES) was used to evaluate the ecological importance of the taxa in epiphytic habitats on tree trunks. Additionally, the epiphytic bryophyte succession of the cedar forest was analysed using multivariate classification techniques (TWINSPAN and DECORANA). The multivariate analysis results showed that the epiphytic bryophyte communities were divided into 2 main groups and 5 different subgroups associated with successional gradient. Moreover, habitat …

Seasonal Variability Of Phytoplankton In A Coastal Lagoon And Adjacent Open Sea In Pakistan, Saima Latif, Zarrien Ayub, Ghazala Siddiqui

Turkish Journal of Botany

The coast of Pakistan (North Arabian Sea) is under the influence of the seasonal cycle of monsoons, which may result in 2 periods of elevated phytoplankton productivity, one during the north-east monsoon (December-February) and the other during the south-west monsoon (May-September). In the present study, elevated primary productivity in the Miani Hor Lagoon and adjacent open sea off Pakistan was found during the south-west monsoon (May-September) and spring inter-monsoon (March-April). The lowest phytoplankton abundance was recorded in the north-east monsoon period at both collection sites. A total of 65 species of diatoms and 32 species of dinoflagellates were identified in …

Minuartia Hamzaoglui (Caryophyllaceae), A New Species From Turkey, Murat Koç, Ahmet Aksoy

Turkish Journal of Botany

Minuartia hamzaoglui M.Koç & Aksoy (Caryophyllaceae) is described as a new species of sect. Minuartia in Turkey. The specimens were collected from Mount Erciyes (Kayseri). The new species is related to Minuartia erythrosepala (Boiss.) Hand.-Mazz. var. erythrosepala. M. hamzaoglui is an endemic species which has a distribution in Central Anatolia. The differences between the species are discussed. Description, distribution, illustration, and conservation status of the new species are given. Seed structures were examined by scanning electron microscopy.

Weed Flora In The Reclaimed Lands Along The Northern Sector Of The Nile Valley In Egypt, Monier Abd El-Ghani, Ashraf Soliman, Rim Hamdy, Ebtesam Bennoba

Turkish Journal of Botany

Deserts comprise about 95% of the total land surface of Egypt; therefore, their potential for production must be assessed. Weed communities are mainly affected by the environment, and studies may increase our knowledge of the relationship among the weed flora, soil properties, crop rotation, soil management, fertiliser usage, and weed control. The area under study is one of the most recently reclaimed lands. The recorded 150 species in the monitored 19 sites were distributed within 33 families. The species-rich families were: Poaceae (31), Asteraceae (23), Brassicaceae (13), Chenopodiaceae (12), and Fabaceae (12). Chorological analysis revealed that the widely distributed species …

Vegetation And Soil Relationships In The Inland Wadi Ecosystem Of Central Eastern Desert, Egypt, Fawzy Salama, Monier Abd El-Ghani, Noha El-Tayeh

Turkish Journal of Botany

In January 2010, torrential rains that had suddenly swept away a limited area in the Eastern Desert facing Qena Province in Upper Egypt resulted in the enriching of the vegetation of some extremely dry wadis at this location. A vegetation survey carried out shortly after this event, in April, revealed the prevalence of annuals in considerable abundance, which are hardly recognisable in such usually dry habitats. The normally scarce perennial vegetation had flourished, too. A total of 32 species, 11 annuals, and 21 perennials that belong to 27 genera and 15 families were recorded. The life-form spectrum in the present …

Effects Of Exogenous Methyl Jasmonate And 2-Isopentenyladenine On Artemisinin Production And Gene Expression In Artemisia Annua, Mahboobeh Zare Mehrjerdi, Mohammad Reza Bihamta, Mansoor Omidi, Mohammad Reza Naghavi, Hassan Soltanloo, Mojtaba Ranjbar

Turkish Journal of Botany

Artemisinin, produced in very low amounts in Artemisia annua L. plants, is one of the most effective drugs in treating malaria. In this study, the effect of exogenous applications of methyl jasmonate (MeJA) and 2-isopentenyladenine (2-iP) in artemisinin production and the main genes of its biosynthesis pathway within a 1-week time period were investigated. Both MeJA and 2-iP increased artemisinin content, but no correlation was found between gene expression and its content. In plants treated with 2-iP, despite increased gene expression following elicitor application, downregulation of gene expression was also observed, which might be attributed to the negative effects of …

Gamma-Induced Infraspecific Polyploidy Via Cytomixis-Mediated Syncyte Formation In Papaver Somniferum (Papaveraceae), Girjesh Kumar, Sana Naseem

Turkish Journal of Botany

This is the first report on the phenomenon of syncyte manifestation through cytomictic transmigration in Papaver somniferum L. The occurrence characteristics and cytological depictions of cytomixis in the meiotic course of gamma-irradiated population reveal the mechanism leading to the origin of the cell fusions/syncytes. The event was more frequent in meiosis I and rare in meiosis II, indicating that the process atrophies at the end of the first meiotic division. The degree of occurrence of the phenomenon virtually concurred with the increase in the treatment dose of gamma irradiation. The phenomenon also affected the qualitative composition of postmeiotic products, i.e. …

Comparative Anatomy Of The Needles Of Abies Koreana And Its Related Species, Ju-Kyeong Eo, Jung-Oh Hyun

Turkish Journal of Botany

The morphological traits of the resin duct of the needle leaves of Abies koreana E.H.Wilson, an endemic species of Korea, and its related species were analysed. The quantitative traits of the resin ducts from 289 individuals were measured, and the observed resin duct types were compared with previous studies. As a result, each characteristic of the resin duct showed some clinal variations with latitude changes. The variations had extreme values in A. nephrolepis (Trautv.) Maxim. on Mt. Sikhote-Alin (Russia) and in A. koreana on Mt. Halla (Korea). In addition, it was difficult to suggest just one type of resin duct …

Species Composition And Distribution Of Centric Diatoms From Türkmen Mountain (Sakarya River Basin/Turkey), Cüneyd Nadi̇r Solak, Maxim Kulikovskiy

Turkish Journal of Botany

Diatoms are used for monitoring the environmental conditions of water. We have little information about centric diatoms in Turkish freshwaters. A total of 50 samples were collected from some springs and small streams of Türkmen Mountain. As a result, 7 species [Cyclotella meneghiniana Kützing, C. ocellata Pantocsek, Cyclostephanos dubius (Fricke) Round, Handmannia balatonis (Pantocsek) Kulikovskiy & Solak comb. nov., Melosira varians Agardh, Stephanodiscus hantzschii Grunow, and S. minutulus (Kützing) Cleve & Möller] were identified, and we also suggest in this study that a new combination for Cyclotella balatonis Pantocsek should be Handmannia balatonis comb. nov. and for C. praetermissa Lund …

Molecular Characterisation Of The Genus Papaver Section Oxytona Using Issr Markers, Tuğba Gürkök, Eli̇f Kaymak, Gülşen Boztepe, Mesut Koyuncu, İskender Parmaksiz

Turkish Journal of Botany

Papaver bracteatum Lindl., P. orientale L., and P. pseudo-orientale (Fedde) Medw., species of section Oxytona Bernh. in the genus Papaver L., are found widely in the native flora of Turkey. They are commercially important for their high alkaloid content. Because genus Papaver section Oxytona has similar morphological characters, it is not easy to distinguish these species. We used the inter-simple sequence repeat (ISSR) molecular marker system to determine the molecular characterisation of this section. In this study, 20 ISSR primers have been studied in 180 accessions collected from 5 different regions of Turkey. A total of 82 bands were obtained, …

Pollen Morphology Of The Genus Onobrychis (Fabaceae) In Turkey, Süleyman Avci, Cengi̇z Sancak, Alp Can, Aydan Acar, Nur Münevver Pinar

Turkish Journal of Botany

The pollen size and morphology of 20 Onobrychis Adans. taxa from Turkey were studied using both light and scanning electron microscopy. Of the taxa studied, Onobrychis fallax Freyn & Sint. and Onobrychis elata Boiss. & Balansa showed the smallest size of pollen grains, while the largest were found in Onobrychis aequidentata (Sibth. & Sm.) d'Urv. and Onobrychis viciifolia Scop. The pollens of all taxa studied represent the tricolpate type of pollen and are prolate in shape. The type of exine found in the studied taxa is reticulate (sect. Dendobrychis DC. and sect. Laphobrychis Hand.-Mazz.), suprareticulate (sect. Onobrychis), or microreticulate (sect. …

Cadmium-Induced Structural Disturbances In Pisum Sativum Leaves Are Alleviated By Nitric Oxide, Tuan Anh Tran, Valya Vassileva, Petar Petrov, Losanka Petrova Popova

Turkish Journal of Botany

In the present study, the protective effect of nitric oxide (NO) against Cd-induced structural disturbances in pea (Pisum sativum) leaves was investigated. Cadmium treatment resulted in a decreased leaf size and thickness of the lamina, reduced intercellular spaces in the mesophyll, small pavement cells, and a high density of stomata. These abnormalities were partially or fully reversed by a simultaneous application of Cd and the NO donor, sodium nitroprusside (SNP). The concentration of 1000 µM SNP was very effective in counteracting the adverse effects of Cd and resulted in leaf structural parameters close to those of the control leaves. These …

The Phylogeny Of Heterocapsa Sp. (Dinophyceae) Isolated From The South Coast Of Iran During A Cochlodinium Polykrikoides Bloom, Gilan Attaran Fariman, Pegah Javid

Turkish Journal of Botany

The genus Heterocapsa Stein is a relatively small armoured dinoflagellate. Because it has few differences in morphological characteristics among its species, species identification is difficult. In this study, small Heterocapsa sp. cells associated with a dense bloom of Cochlodinium polykrikoides Margalef were collected from the south-east coast of Iran. While Heterocapsa sp. was isolated, C. polykrikoides could not be isolated by single cell or serial dilution methods. Thus, a unialgal strain of Heterocapsa sp. was used for molecular analysis and species identification. In order to carry out phylogenetic analysis, rDNA was extracted and large subunit domains of D1-D3 were sequenced. …

New Staining Technique For Fungal-Infected Plant Tissues, Joao Paulo Rodrigues Marques, Marli Kasue Misaki Soares, Beatriz Appezzato-Da-Glória

Turkish Journal of Botany

The use of histological techniques, combined with the use of dyes, facilitates the visualisation of fungi present in tissues, allowing the details of plant-pathogen interactions in many different pathosystems to be revealed. The purpose of this study is to present a new double-staining method that uses cotton blue and safranin to identify fungal structures in plant tissues. With this staining method, the fungal hyphae stain blue and plant cell walls stain orange. The new method was tested on 2 pathosystems. The technique distinguishes between fungal and plant cell walls, giving it great practical utility. This is a staining technique that …