Marine Biology Commons^™

Jellyfish Throwdown: Invasive Versus Native, Brooke Bemowski, Trisha Huynh, Lindsay J. Sullivan, Wim Kimmerer

STAR Program Research Presentations

The San Francisco Bay Estuary is home to many species of marine and wildlife that create a delicate ecological balance. Invasive jellyfish introduced to the bay though cargo shipping are believed to be competing with the endangered delta smelt for the same food source of copepods. Samples of zooplankton were taken from high and low salinity zones in the San Francisco Bay over three years in months June through February to correlate with the peak of the jellyfish lifecycle. The preserved samples are looked through and jellyfish are removed and recorded. The species of jellyfish is determined using features such …

Salinity And Temperature Distribution Of Jellyfish In The San Francisco Estuary, Trisha Huynh, Brooke Bemowski, Lindsay Sullivan, Wim Kimmerer

STAR Program Research Presentations

Jellyfish are generally characterized by their jelly-like bodies and internal lining (two tissue layers). They found both in the phylum Ctenophora and the phylum Cnidaria. Ctenophores differ from cnidarians primarily due to the rows of “combs”, or cilia, which are used for transportation. Additionally, ctenophores possess sticky cells while cindarians possess stinging cells. Jellyfish depend on zooplankton (small floating aquatic animals) as a food source; as a result, they are potential competitors and predators to plankton-eating fish and may negatively impact fish populations.

As recently as 1950, jellyfish have entered the San Francisco Bay from the Mediterranean Sea (probably …

The Path To The Sea: Leatherback Hatchling Orientation At Sandy Point National Wildlife Refuge, Christina Macmillan, Kelly Stewart

STAR Program Research Presentations

Once sea turtle hatchlings emerge from their nest, they must find their way to the ocean by using cues such as a bright horizon and the slope of the beach. While moving toward the water, hatchlings often must navigate past predators and through vegetation, sticks, footprints in the sand, and other dangers such as ghost crab holes. Sometimes hatchlings become confused (or disoriented) and turn in circles to find the right route to the water. Sea turtle hatchlings also may become disoriented as a result of human impacts such as town lights or trash. The purpose of our experiment was …

Salinity Distribution Of Microplankton In The San Francisco Estuary, Carrie Ann Sharitt, Lindsay Sullivan, Wim Kimmerer

STAR Program Research Presentations

Microplankton are a diverse group of planktonic organisms ranging from 0.02 to 0.2 millimeters. Since the group is defined solely by size, it spans numerous taxonomic groups, including both heterotrophs and autotrophs. Microplankton are abundant in all aquatic ecosystems and are important prey for many organisms, including bivalves, crustaceans, and fish. The San Francisco Bay is truly an estuary as saltwater enters the estuary under the Golden Gate Bridge and freshwater flows in from the Sacramento and San Joaquin Rivers. Thus, there is a gradient of salinity from freshwater (0) in the rivers to saltwater by the Golden Gate Bridge …

Habitat Preference Of The Introduced Green Crab Carcinus Maenas, Brittany Susan Daum, Andy Chang

STAR Program Research Presentations

The aim of this experiment was to determine if Carcinus Maenas (European Green Crab) hhas a habitat preference in Seadrift Lagoon located in Stinson Beach, California. This experiment was accomplished by placing crab traps on the two types of substrate in Seadrift (sand and algae). The traps were pulled up every 24 hours and the size and sex of crabs was recorded. The data was analyzed to see if there was a difference in habitat preference based upon size, sex, and number of crabs. Using a Poisson Regression model, the size and sex of crabs were not significantly different between …

Melanin As An Oto-Protective Pigment In Two Fish Species: Poecilia Latipinna And Cyprinus Carpio , Bethany N. Coffey

Masters Theses & Specialist Projects

Melanin is the dark pigment found in most organisms that gives color to the skin, hair, feathers, and eyes of vertebrates. While melanin is known to also be present in the stria vascularis of the mammalian cochlea, its function in the inner ear is still unknown. Some previous studies have indicated that melanin may serve to protect the mammalian ear from hearing loss. Minimal previous research on melanin within the inner ears of fishes has been conducted. In this study, the melanin levels in the inner ears of different color morphs of two fish species (Poecilia latipinna and Cyprinus …

Microbial Community Assembly Found With Sponge Orange Band Disease In Xestospongia Muta (Giant Barrel Sponge), Rebecca Mulheron

HCNSO Student Theses and Dissertations

The giant barrel sponge, Xestospongia muta is an iconic and essential species of the coral reefs in South Florida. The sponge has primary roles providing ecosystem services and creating unique habitats for diverse microbial communities. On April 27, 2012 an outbreak of Sponge Orange Band Disease (SOB) was detected off the coast of South Florida. The disease begins with sponge bleaching, followed by mesohyl or “mesohyl” necrosis and often total mesohyl disintegration. Sampling from two diseased populations at Boynton Beach and Fort Lauderdale, FL took place on May 11th and May 29th, 2012. Each of the nine diseased sponges from …

Long-Term Stony Coral Transplantation Success Offshore Southeast, Florida, Usa, Theresa Elizabeth Robitaille

HCNSO Student Theses and Dissertations

Transplanted coral (Order: Scleractinia) colony condition was surveyed at five injury event sites, two coral nurseries, and one impact minimization location off the coast of Broward County, Florida, USA in 2012. Because stony corals are long-lived and slow growing, generally growing less than one centimeter in diameter per year, determining transplantation success requires long-term (greater than two years) monitoring. Long-term monitoring efforts, however, are rarely completed. This study is unique in that it examined stony coral transplantation success of several projects over a time period of 6-17 years. Control colonies were also surveyed in order to compare naturally growing coral …

Effects Of Dominant Plant Species And Water Depth On Methane Fluxes In A Freshwater Wetland, Marco T. Finocchiaro

Theses, Dissertations and Culminating Projects

Methane (CH₄) is a highly potent greenhouse gas (GHG) found to contribute to the global problem of atmospheric warming. Wetlands have been documented to possess the ability to impact the earth’s CH₄ cycle yet are in a state of global depletion. CH₄ flux rates in wetlands have been found to vary within wetlands based on variability in environmental factors. There is a lack o f consensus on the effects of water depth as well as dominant plant type on CH₄ flux rates. In this study on Lake Wapalanne, Sussex County, NJ, submerged areas were found …

Application Of A Bioenergetics Framework For Assessing Sub-Lethal Effects Of Pollutants In The Freshwater Mussel Elliptio Complanata, Christopher G. Goodchild

All Theses And Dissertations

Although biomarkers are frequently used to assess sublethal effects of contaminants, a lack of mechanistic linkages to higher-level effects limits the predictive power of biomarkers. Bioenergetics has been proposed as a framework for linking cellular effects to whole-animal effects. We investigated sublethal effects of exposure to wastewater treatment facility effluent in freshwater mussels in situ, thereby capturing ecologically relevant exposure conditions. Our study focused on the energetic biomarker AMP-activated protein kinase (AMPK), while also considering more traditional biomarkers like heat shock proteins (HSP70), and antioxidant enzymes (i.e., superoxide dismutase (SOD), glutathione-S-transferase (GST)). We examined biomarkers at mRNA and protein levels. …

Genetic Variations In Two Seahorse Species (Hippocampus Mohnikei And Hippocampus Trimaculatus): Evidence For Middle Pleistocene Population Expansion, Yanhong Zhang, Nancy Kim Pham, Huixian Zhang, Junda Lin, Qiang Lin

Ocean Engineering and Marine Sciences Faculty Publications

Population genetic of seahorses is confidently influenced by their species-specific ecological requirements and life-history traits. In the present study, partial sequences of mitochondrial cytochrome b (cytb) and control region (CR) were obtained from 50 Hippocampus mohnikei and 92 H. trimaculatus from four zoogeographical zones. A total of 780 base pairs of cytb gene were sequenced to characterize mitochondrial DNA (mtDNA) diversity. The mtDNA marker revealed high haplotype diversity, low nucleotide diversity, and a lack of population structure across both populations of H. mohnikei and H. trimaculatus. A neighbour-joining (NJ) tree of cytb gene sequences showed that H. mohnikei haplotypes formed …

The Ontogeny Of Whistle Production In Infant Atlantic Bottlenose Dolphins (Tursiops Truncatus) During The First Thirty Days Of Life, Brittany Leigh Jones

Master's Theses

The manner in which dolphin calves acquire their whistle repertoire is largely unknown. This paper focuses on whistle development in four bottlenose dolphin calves during the first thirty days of life in order to increase our understanding of the early emergence of whistles and whistle-like vocalizations. The acoustic parameters of whistle-type vocalizations (i.e., whistles and whistlesquawks) that coincided with a bubblestream emission from the focal calf and/or its mother were analyzed, as were the behavioral states of the mother-calf pair during the emission of such vocals. Mother and calf whistle rates are inversely related, with the mother whistling more often …

Sex Ratio Assessment Of Endangered Kemp’S Ridley Sea Turtle Foraging Populations: Validation Of A Testosterone Elisa For Juvenile Sex Determination, William A. Hilton, Camryn D. Allen

STAR Program Research Presentations

Currently all species of sea turtles are listed as threatened or endangered with extinction under the U.S. Endangered Species Act. In order to effectively construct management approaches we need as much information on various sea turtle populations as possible including demography, genetic origin, and critical habitat. One demographic piece of data that is lacking is the sex ratio of turtle populations in foraging habitats, as this information is integral in determining overall population abundance. Because secondary sex characteristics (i.e. males have longer tails) are not evident until turtles start to reach sexual maturity, the sex of juvenile turtles cannot be …

Loggerhead Sea Turtle (Caretta Caretta) Hatchling Disorientation In Broward County, Florida, Allison Durland Donahou

HCNSO Student Theses and Dissertations

Hatchling disorientation after emergence is a major factor impacting sea turtle populations. This study utilized data from over 1,200 Florida Fish and Wildlife Conservation Commission (FWC) Marine Turtle Disorientation Report forms from years 2006 to 2011 to assess changes in the severity and locations of disorientation events and the impact of municipal beach lighting ordinances. While the FWC forms were completed for all sea turtle species observed, this study focused only on loggerhead sea turtles (Caretta caretta). A Disorientation Severity Index (DSI) was derived from the number of hatchlings and the direction of their tracks leaving the nests …

Environmental Variability And Biodiversity Of Megabenthos On The Hebrides Terrace Seamount (Northeast Atlantic), Lea-Anne Henry, Johanne Vad, Helen S. Findlay, Javier Murillo, Rosanna Milligan, J. Murray Roberts

Marine & Environmental Sciences Faculty Articles

We present the first remotely operated vehicle investigation of megabenthic communities (1004–1695 m water depth) on the Hebrides Terrace Seamount (Northeast Atlantic). Conductivity-temperature-depth casts showed rapid light attenuation below the summit and an oceanographic regime on the flanks consistent with an internal tide, and high short-term variability in water temperature, salinity, light attenuation, aragonite and oxygen down to 1500 m deep. Minor changes in species composition (3–14%) were explained by changes in depth, substratum and oceanographic stability, whereas environmental variability explained substantially more variation in species richness (40–56%). Two peaks in species richness occurred, the first at 1300–1400 m where …

Eyes In The Sky: Linking Satellite Oceanography And Biotelemetry To Explore Habitat Selection By Basking Sharks, Tobey H. Curtis, Stephan I. Zeeman, Erin L. Summers, Steven X. Cadrin, Gregory B. Skomal

Marine Sciences Faculty Publications

Background: Satellite-based oceanographic data products are a valuable source of information on potential resource availability for marine species. Satellite oceanography data may be particularly useful in biotelemetry studies on marine species that feed at low trophic levels, such as zooplanktivorous whales, sharks, and rays. The basking shark, Cetorhinus maximus, is a well-documented zooplanktivore in the western North Atlantic, yet little is known of its movements and spatial ecology in this region. A combination of satellite tag technologies were used to describe basking shark movements with respect to concurrent satellite-observed oceanographic conditions in order to test for selection of these …

Biophysical Interactions In The Straits Of Florida: Turbulent Mixing Due To Diel Vertical Migrations Of Zooplankton, Cayla Whitney Dean

HCNSO Student Theses and Dissertations

Diel vertical migrations (DVM) comprise the largest animal migration on the planet and are a phenomenon present in all bodies of water on Earth. A strong sound scattering layer undergoing DVM was observed in the Straits of Florida via a bottom-mounted Acoustic Doppler current profiler (ADCP) Workhorse Longranger 75 kHz (Teledyne RD Instruments) located at the 244 m isobath. ADCP average backscatter showed a clear periodicity corresponding with sunrise and sunset times indicating the presence of a nocturnal DVM. Analysis of the ADCP backscatter data indicated zooplankton swimming velocities were faster during sunrise than sunset times. In several cases the …

Socioeconomics Of The Lionfish Derby Fishery, Kristina Ann Trotta

HCNSO Student Theses and Dissertations

Throughout the western North Atlantic Ocean, Caribbean Sea, and the Gulf of Mexico, invasive Indo-Pacific lionfish (Pterois volitans/miles) have established dense populations, greatly impacting their host environments. Lionfish tournaments have been an important tool for resource managers and other concerned stakeholders in suppressing local populations of lionfish. Tournaments can also bring economic benefits to the communities where they are held, despite this not being the primary purpose.

Five derby events in Florida and the Bahamas were surveyed and 119 participants were interviewed on site, using a survey asking them to describe (1) the lionfish derby experience; (2) non-derby related lionfish …

A Mitogenomics View Of The Population Structure And Evolutionary History Of The Basking Shark Cetorhinus Maximum, Kimberly A. Finnegan

HCNSO Student Theses and Dissertations

The basking shark, Cetorhinus maximus, has historically been a target of international fisheries, leading to well-documented declines in parts of its global distribution. Currently, the basking shark is listed as globally ‘Vulnerable’ and regionally ‘Endangered’ (North Pacific and Northeast Atlantic) on the IUCN Red List of Threatened Species, rendering the species an international conservation priority. Here, we assessed the global matrilineal genetic population structure and evolutionary history of the basking shark by completing the first whole mitochondrial genome sequence level survey of animals sampled from three globally widespread geographic regions: the western North Atlantic (n = 11), the …

A Review Of Bottlenose Dolphin (Tursiops Truncatus) Vocalizations And An Investigation Into The Existence Of Signature Whistles In A Captive Dolphin Population, Gillian Reily

HCNSO Student Capstones

Individual recognition of conspecifics is important for various reasons in both terrestrial and marine dwelling species and is carried out through a variety of modes including visual, chemical and auditory cues. The ability to recognize individuals acoustically is often carried out through the use of signature vocalizations. The production and use of signature whistles within bottlenose dolphins has been extensively tested since their existence was first suggested almost 50 years ago. From the research, two primary hypotheses have emerged: the signature whistle hypothesis and the whistle repertoire hypothesis. This work discusses the various acoustical means of individual recognition found within …

Problems Associated With A Lipofuscin Extraction Method Used To Age Blue Crabs Callinectes Sapidus Cultured In Florida, Usa, Claire E. Crowley, Ryan L. Gandy, Kendra L. Daly, Edward S. Van Vleet

Marine Science Faculty Publications

The blue crab Callinectes sapidus is an ecologically and economically important component of marine and estuarine ecosystems of the western Atlantic and Gulf of Mexico. Current stock assessments lack a clear understanding of the age structure of blue crab populations in Florida (USA). Blue crabs and other crustaceans are especially difficult to age because of the complex nature of their discrete, rather than continuous, growth patterns. Chesapeake Bay researchers developed a method of aging blue crabs by assaying the aging pigment lipofuscin extracted from eyestalk nerve tissue. Here we investigated the usefulness of that method in determining the age of …

Global Population Structure Of The Dusky Shark And Geographic Sourcing Of Shark Fins From Commercial Markets, Teagen K. Gray

HCNSO Student Theses and Dissertations

The dusky shark, Carcharinus obscurus, is a globally distributed, coastal-pelagic species subject to an apparent high level of exploitation. The International Union for the Conservation of Nature (IUCN) lists this species as “Vulnerable” globally, and “Endangered” within western North Atlantic and Gulf of Mexico waters due to an over 80% decline in this region, with no evidence of population recovery. The extensive exploitation of dusky sharks may partly be attributed to the high market value of its fins, but the contribution of individual dusky shark stocks to the fin markets is unknown. This knowledge would be helpful to detect …

Ontogenetic Investigation Of Underwater Hearing Capabilities In Loggerhead Sea Turtles (Caretta Caretta) Using A Dual Testing Approach, Ashley L. Lavender, Soraya M. Bartol, Ian K. Bartol

Biological Sciences Faculty Publications

Sea turtles reside in different acoustic environments with each life history stage and may have different hearing capacity throughout ontogeny. For this study, two independent yet complementary techniques for hearing assessment, i.e. behavioral and electrophysiological audiometry, were employed to (1) measure hearing in post-hatchling and juvenile loggerhead sea turtles Caretta caretta (19-62 cm straight carapace length) to determine whether these migratory turtles exhibit an ontogenetic shift in underwater auditory detection and (2) evaluate whether hearing frequency range and threshold sensitivity are consistent in behavioral and electrophysiological tests. Behavioral trials first required training turtles to respond to known frequencies, a multi-stage, …

Lateral Line Analogue Aids Vision In Successful Predator Evasion For The Brief Squid, Lolliguncula Brevis, Carly A. York, Ian K. Bartol

Biological Sciences Faculty Publications

Cephalopods have visual and mechanoreception systems that may be employed to sense and respond to an approaching predator. While vision presumably plays the dominant role, the importance of the lateral line analogue for predator evasion has not been examined in cephalopods. To test the respective roles of vision and the lateral line analogue, brief squid, Lolliguncula brevis, were observed in the presence of summer flounder, Paralichthys dentatus, under light and dark conditions with their lateral line analogue intact and ablated. Hair cell ablation was achieved through a pharmacological technique used for the first time on a cephalopod. The …

The Saco River Plume: A Discussion Of The Near-Field Dynamics, Barbara A. Fortier

All Theses And Dissertations

This study focused on the freshwater discharge plume from the Saco River in southwestern Maine to determine the mechanisms responsible for the largest impacts on the near-field dynamics in this region. We examined the forcing factors that tended to increase the plume's spatial extent upshelf of the river mouth. Salinity, temperature, and density data were collected during cruises from May through November 2010 and by two surface moorings deployed upshelf of the Saco River mouth. We found a distinct variation in the latitude of the upshelf boundary of the plume during and after periods of high discharge. Furthermore, we found …

The Ecological Impact Of Casitas On Caribbean Spiny Lobster (Panulirus Argus) Populations In The Florida Keys, Fl, (Usa), Benjamin C. Gutzler

Biological Sciences Theses & Dissertations

Casitas are artificial structures placed on the seabed by fishermen to aggregate Caribbean spiny lobsters (Panulirus argus) for ease of capture. Some researchers suggest that they may also enhance lobster populations in shelter-limited environments. Conversely, aggregation of lobsters within casitas may be detrimental to the population if the nutritional condition or mortality of lobsters is poorer in casitas than in natural shelters. Small juvenile lobsters may be at particular risk because their foraging range is smaller and they are more readily preyed upon than larger lobsters. If so, then casitas placed in lobster nurseries may function as "ecological traps"; wherein …

Coral Reef Conservation Program (Crcp) Local Action Strategy (Las) Project 3b “Southeast Florida Coral Reef Fishery-Independent Baseline Assessment” – 2012-2013 Interim Report, Kirk Kilfoyle, Brian K. Walker, Steven G. Smith, Richard E. Spieler

Marine & Environmental Sciences Faculty Reports

Reef fishes are important biologic, ecologic, and economic resources of the marine ecosystem which must be managed for sustainability. Until recently there was no long-term monitoring program in place to assess the condition of fish resources of the northern Florida Reef Tract (FRT) (northern Miami-Dade, Broward, Palm Beach, and Martin counties). An assessment/monitoring plan for the northern Florida reef tract was designed through a joint cooperative effort by scientists at the University of Miami Rosenstiel School of Marine and Atmospheric Science, NOAA-Southeast Fisheries Science Center and Nova Southeastern University Oceanographic Center (NSUOC). This report is a synoptic compilation of the …

Southeast Florida Shallow-Water Habitat Mapping & Coral Reef Community Characterization, Brian K. Walker, Katelyn Klug

Marine & Environmental Sciences Faculty Reports

Baseline mapping and quantitative assessment data are required prior to future permitted or un-permitted impacts in order to determine the pre-existing state of the benthic resources; therefore, it is imperative that these data be collected on the ecologically sensitive and economically valuable shallow-water coral reef habitats in southeast Florida. In southeast Florida, the nearshore reef habitats are most vulnerable to coastal construction activities and other anthropogenic impacts, therefore these habitats were the focus for this study. The study goals were to provide a spatially appropriate map of increased resolution and a regional quantitative characterization of nearshore benthic resources to evaluate …

Consistency Of The Current Global Ocean Observing Systems From An Argo Perspective, K. Von Schuckmann, J.-B. Sallée, D. Chambers, P.-Y. Le Traon, C. Cabanes, F. Gaillard, S. Speich, M. Hamon

Marine Science Faculty Publications

Variations in the world's ocean heat storage and its associated volume changes are a key factor to gauge global warming and to assess the earth's energy and sea level budget. Estimating global ocean heat content (GOHC) and global steric sea level (GSSL) with temperature/salinity data from the Argo network reveals a positive change of 0.5 ± 0.1 W m⁻² (applied to the surface area of the ocean) and 0.5 ± 0.1 mm year⁻¹ during the years 2005 to 2012, averaged between 60° S and 60° N and the 10–1500 m depth layer. In this study, we present an …

The Air-Sea Interface And Surface Stress Under Tropical Cyclones, Alexander Soloviev, Roger Lukas, Mark A. Donelan, Brian K. Haus, Isaac Ginis

Marine & Environmental Sciences Faculty Articles

Tropical cyclone track prediction is steadily improving, while storm intensity prediction has seen little progress in the last quarter century. Important physics are not yet well understood and implemented in tropical cyclone forecast models. Missing and unresolved physics, especially at the air-sea interface, are among the factors limiting storm predictions. In a laboratory experiment and coordinated numerical simulation, conducted in this work, the microstructure of the air-water interface under hurricane force wind resembled Kelvin-Helmholtz shear instability between fluids with a large density difference. Supported by these observations, we bring forth the concept that the resulting two-phase environment suppresses short gravity-capillary …