Marine Biology Commons^™

Retention Time Of Microplastics In The Purple Sea Urchin (Arbacia Punctulata), Alexandra Shore

Honors Theses and Capstones

Marine ecosystems around the world are facing the problem of plastic pollution. Large pieces of plastic eventually degrade into smaller microplastics that are suspended in the water column and sink to the seabed. Sea urchins are exposed to microplastics as they graze on the sea floor and can accidentally consume these pollutants. Sea urchins are ecologically important animals because they physically alter their ecosystem via grazing and are integral part of marine food webs. To better understand how sea urchins interact with microplastics, purple sea urchins were exposed to microfibers and microspheres in a laboratory setting, and the retention time …

New Hampshire Shellfish Under Pressure: Physiological Effects Of Climate Change And Toxic Algal Blooms, Olivia Boyan

UNH URC Open (2026 and after)

Climate change driven effects on the ocean, including warming water, acidification, and changes in the presence of harmful algal blooms (HABs) are causing metabolic pressures on marine organisms, particularly in the Gulf of Maine. Shellfish are susceptible to these pressures because their metabolic processes including growth and respiration are influenced by water temperature, pH, and consumption of algal toxins. This study investigates the effects of ocean warming, acidification, and diet toxicity level on the growth and respiration of Blue mussels (Mytilus edulis), Eastern oysters (Crassostrea virginica), and Sea scallops (Placopecten magellanicus). Selected individuals were subjected to water treatments simulating ambient …

Parasite Party: Investigating Ecological Drivers Of Trematode Parasite Prevalence Across The Isles Of Shoals, Aimee D. Bousquet, April Blakeslee, Amy Fowler, David Buck

UNH URC Open (2026 and after)

Parasite Party: Investigating Ecological Drivers of Trematode Parasite Prevalence Across the Isles of Shoals

Assessing Effectiveness Of Runnel Restoration In New England Salt Marsh Habitats, David M. Burdick, Grant Mckown, Gregg Moore, Jenny Gibson, Wenley Ferguson, John Herbert, Nancy Pau, Susan Adamowicz, Geoff Wilson

Faculty Publications

Rising sea levels that increase flooding in salt marshes recovering from hydrologic impairments is reducing nesting habitat for salt marsh sparrows. Abandonment of colonial farming practices (1600s through 1900s) has resulted in large, waterlogged basins characterized by shallow depressions (pannes) dominated by short-form Spartina alterniflora and unvegetated megapools that are subsiding. A relatively new technique designed to provide regular tidal flooding and drainage to the waterlogged basins that have formed on the marsh is runnelling – creation of shallow hydrologic features on the marsh surface. Will runnels result in revegetation of pannes and pools with productive perennial grasses that are …

Raising Awareness About Hydrographic Careers Through Sea-Going Opportunities, Juliet Kinney, Rochelle Wigley, Sara Cardigos, Fahima Bellabad, Larissa Marques Freguette

Center for Coastal and Ocean Mapping

There is a worldwide shortage of hydrographic personnel (van Wegen, 2021, Hydro International 2008).  Calls for action to address this issue include the IHO’s Hydrography at Sea opportunities, while intiatiative such as Seabed 2030 are bringing broader attention to the field and helping to catalyze new discussions and partnerships in hydrography (IHO, 2024).  The global sea floor mapping community needs to develop a broader workforce pipeline.  We would like to highlight the importance of providing time at sea and leadership opportunities in developing a robust workforce.  We start with an overview of a selection of current exchange and training programs …

Investigation Of The Effects Of Ocean Acidification On Juvenile Homarus Americanus Feeding Behavior, Sophia Roy

Honors Theses and Capstones

Climate change has led to increased CO2 absorption by ocean surface waters, resulting in decreased pH levels, a phenomenon known as ocean acidification (OA). A primary class of marine organism behavior is impacted by OA, in particular, olfactory-mediated behaviors related to foraging and feeding success. However, the biological mechanisms responsible for the documented impairment of foraging and feeding-related behaviors remains in question. We find that juvenile American lobsters (H. americanus) exhibit significantly faster rates of total feeding times in response to short-term low pH exposure. However, total search time and total handling time were not affected by pH when examined …

Density Dependent Calling Behavior In North Pacific Humpback Whales, Lucas J. Anderson

Honors Theses and Capstones

Animal density can define factors such as mating success, food acquisition, and communication. Inferring animal density from vocal rates is an important tool for estimating abundance and space use in difficult-to-study species like marine mammals and requires an understanding of the relationship between social context and calling rates. The goal of this project was to investigate the relationship between animal density and call rate in Southeast Alaskan humpback whales (Megaptera novaeangliae). Passive acoustic monitoring data were collected along with visual observations gathered near Frederick Sound and Stephen’s Passage, Southeast Alaska, over two summers (2019, 2022). Observers watched whales …

The Impact Of Nutrient Depletion On The Effect Of Hhq On Emiliania Huxleyi, Marley Gonsalves

Honors Theses and Capstones

Emiliania huxleyi is a ecologically important, bloom-forming coccolithophore. HHQ is a bacteria compound that causes cell stasis in E. huxleyi that can lead to bloom termination. This study analyzed the role that nutrient depletion plays in this relationship. Results show that nitrogen depletion protects cells from the effects of HHQ, affecting bloom dynamics.

Investigating The Relationship Between Sea Ice Extent And Erignathus Barbatus Breeding Phenology In The Alaskan Arctic, Rachel E. Lewis

Honors Theses and Capstones

No abstract provided.

Identification Of Novel Biosynthetic Gene Clusters Encoding For Polyketide/Nrps-Producing Chemotherapeutic Compounds From Marine-Derived Streptomyces Hygroscopicus From A Marine Sanctuary, Hannah Ruth Flaherty

Honors Theses and Capstones

Nearly one out of six deaths in 2020, around ten million people, were caused by cancer, making it a leading cause of death worldwide (WHO, 2022). This major public health issue, in addition to the rise of multidrug-resistant (MDR) pathogens, provides a high demand for the discovery of new pharmaceutical drugs to be used clinically to treat these conditions. The Streptomyces genus accounts to produce 39% of all microbial metabolites currently approved for human health, indicating its potential as an important species to study for antimicrobial and anticancer agents. The long linear genome of Streptomyces contains specialized sequences known as …

Screening Ocean Samples From Georgia For The Presence Of Msx And Dermo Using Pcr And Qpcr Methods, Olivia Michelle Williams

Honors Theses and Capstones

This Senior Thesis project aimed to be able to screen samples that came in from a PhD student in Georgia for the presence of two oyster diseases, MSX and Dermo. This study was done using PCR followed by visualizing on E-gels for initial presence of disease. These were then followed by qPCR and visualization on Criterion gels. These Criterion gels were able to be analyzed in order to calculate the pg/uL of MSX and Dermo in the original ocean samples. Since the samples were sent in over the course of February-August ‘21 the presence over time was also able to …

Seaweed Monitoring In The Great Bay Estuary, Nh: 2020 Annual Report, Andrew Payne, David M. Burdick, Gregg Moore, Natalie White, Christopher Peter, Arthur Mathieson

Jackson Estuarine Laboratory

As water temperatures rise due to global warming and nitrogen inputs change, it is important to understand how these changes are impacting vegetative communities that form the basic habitat structure in the Great Bay Estuary, NH. The abundance and taxa of intertidal seaweeds have been monitored at fixed locations throughout the Estuary since 2013. In 2020, percent cover and biomass were collected from five intertidal and four subtidal sampling locations. Data from 2013-2020 show appreciable amounts of nuisance seaweeds (primarily reds), including several introduced species. Cover of green seaweeds decreased significantly over time at the two intertidal sites (Depot Road …

Photographs Of Seaweeds In Intertidal Monitoring Plots, 2020, David M. Burdick, Gregg Moore

Jackson Estuarine Laboratory

Records of photographs of intertidal seaweed sampling plots for cover (50 by 50 cm) and biomass (25 by 25 cm) collected by Jackson Estuarine Laboratory research staff in 2020.

Subtidal Seaweed And Eelgrass Monitoring Photographs 2020, David M. Burdick, Gregg E. Moore

Jackson Estuarine Laboratory

Records of photographs of subtidal seaweed and eelgrass sampling plots for cover (50 by 50 cm) collected by Jackson Estuarine Laboratory research staff in 2020.

Occurrence Of Pulmonary Arteritis With Lungworm Infections In Gray Seals From New England, 2013-2020, Jillian R. Broadhurst, Inga Sidor Dvm, Ms, Dacvp

Honors Theses and Capstones

Gray seals (Halichoerus grypus) are a common pinniped species in New England coastal waters. Parasitic infection is an important cause of mortality for this species, and lungworm species are frequently implicated in cases of respiratory infection, especially in pups and weanling seals. The most common of these is Otostrongylus circumlitus, a large nematode found in the bronchi and bronchioles of affected seals. The full life cycle is unknown but its presence in lungs and sometimes pulmonary arteries suggests that migration via arterial circulation occurs. Signs and microscopic findings are widely variable; our cases included dyspnea, bloody mucoid …

'How To' Guide For Synthesizing Nerrs Marsh Monitoring Data, David M. Burdick

Jackson Estuarine Laboratory

The purpose of this guide is to provide a user-friendly and informative guide on ‘How to’ synthesize salt marsh data from theNational Estuarine Research Reserve System (NERRs). In this guide, we outline and detail the steps taken from requesting/cataloguing data to summarizing these data through visual and statistical analysis. These methods can be used at a single or multiple site(s) as well as over multiple years. Though this guide is specific to NERRs and focuses on plant community data, it may also be useful for other monitoring parameters and programs to guide protocol design and analyses. Here, we conduct a …

A Guide To Integrate Plant Cover Data From Two Different Methods, David M. Burdick, Chris R. Peter

Jackson Estuarine Laboratory

There is a lack of consensus on how to monitor (measure) plant cover in tidal marshes. Multiple methods exist to estimate plant cover, which can confound interpretation when making comparisons across methods. Here, we provide a novel and more accurate approach, building off of traditional data transformations designed to integrate the two most common methods: Point Intercept and Ocular Cover.

Macroalgal Monitoring In The Great Bay Estuary: 2018 Annual Report, David M. Burdick, Gregg E. Moore, Arthur C. Mathieson, Andrew Payne, Chris Peter

PREP Reports & Publications

Since 2013, the abundance and taxa of intertidal macroalgae have been assessed at fixed locations throughout the Great Bay Estuary in New Hampshire. Algal abundance may be influenced by environmental conditions such as nutrient levels, water temperature, light and invasive species. Therefore, abundance of different algal groups can provide insights into the overall health of the estuary and signal ecological change. In 2018, intertidal abundance data for percentage cover and biomass were collected, as planned, from five of the eight sites. For the first time, subtidal sampling arrays were also incorporated at all four sites in Great Bay proper to …

Piscataqua Region Estuaries Partnership 2018 Annual Report, Piscataqua Region Estuaries Partnership

PREP Reports & Publications

No abstract provided.

Wetlands Evaluation For Philbrick's Pond Marsh Drainage Evaluation North Hampton, Nh, David M. Burdick, Chris Peter, Gregg Moore

Natural Resources & the Environment

Philbrick’s Pond is a lagoon type estuary that formed landward of barrier beach spits in North Hampton, NH. Its inlet was stabilized and restricted by the road that is now Route 1A or Ocean Boulevard. Water flow from the Gulf of Maine passes through a culvert running under Route 1A and into a small waterway and is further restricted as it runs through a clay pipe under an old trolley berm. The lagoon is characterized as a 29 acre tidal marsh. The goal of the overall project is to evaluate the condition and hydrology of the two restrictions recognizing the …

Integrated Analysis Of The Value Of Wetland Services In Coastal Adaptation; Methodology And Case Study Of Hampton-Seabrook Estuary, New Hampshire, Paul Kirshen, Semra Aytur, David M. Burdick, Diane Foster, Tom Lippmann, Ellen Douglas, Sydney Nick, Chris Watson

Jackson Estuarine Laboratory

The present impacts from coastal storms and high tides grow significantly over time due to SLR even over the relatively short period to 2060. Hydrodynamic model simulations of storm surge with and without sea level rise scenarios show that although flooding and inundation increases with increasing subtidal forcing and higher sea level, dissipation of the tide and storm surge in the estuary channel somewhat limits the maximum inundation that might otherwise be expected in the back marsh areas. The estuary is dominated by high marsh, which lies high in the intertidal zone and by 2060 it will convert to mostly …

Preparing For A Northwest Passage: A Workshop On The Role Of New England In Navigating The New Arctic, Katharine A. Duderstadt, Catherine M. Ashcraft, Jennifer F. Brewer, Elizabeth Burakowski, Jaed M. Coffin, Jack E. Dibb, Lawrence C. Hamilton, Nancy E. Kinner, Larry A. Mayer, Jennifer L. Miksis-Olds, Joseph Salisbury, Kerri D. Seger, Ruth K. Varner, Cameron P. Wake

All Materials

Preparing for a Northwest Passage: A Workshop on the Role of New England in Navigating the New Arctic (March 25 - 27, 2018 -- The University of New Hampshire) paired two of NSF's 10 Big Ideas: Navigating the New Arctic and Growing Convergence Research at NSF. During this event, participants assessed economic, environmental, and social impacts of Arctic change on New England and established convergence research initiatives to prepare for, adapt to, and respond to these effects. Shipping routes through an ice-free Northwest Passage in combination with modifications to ocean circulation and regional climate patterns linked to Arctic ice melt …

Review Of Seagrassnet Monitoring Photographs In Great Bay, New Hampshire, Usa 2007 - 2014, Frederick T. Short

PREP Reports & Publications

SeagrassNet is a global monitoring program begun in 2001 and designed to scientifically detect and document seagrass habitat change (Short et al. 2006a, 2014). Monitoring of eelgrass (Zostera marina L.) in the Great Bay Estuary using SeagrassNet was conducted in Portsmouth Harbor between 2001 and 2009 (Short et al 2006b, Rivers and Short 2007), and is ongoing in Great Bay itself, from 2007 (Short 2009) to the present. In this report, July quadrat photos taken along the three Great Bay SeagrassNet transects from 2007 – 2014 are presented and discussed. They provide useful documentation of field percent cover measurements of …

2016 Oyster Reef Restoration Project Funded By The Aquatic Resources Mitigation Program, Raymond E. Grizzle, Krystin M. Ward

PREP Reports & Publications

This report describes the results of the construction and initial monitoring phase of an oyster restoration project conducted in 2016 by the University of New Hampshire (UNH) and The Nature Conservancy (TNC), funded by the New Hampshire Aquatic Resources Mitigation Program. The overall goal of the project was to construct 5 acres of new oyster reef habitat in an area adjacent to a live natural reef northwest of Nannie Island, in the Town of Newington, NH, off Woodman Point. The report is organized according to the four major tasks listed as deliverables in the subaward to UNH from TNC.

Seagrassnet Monitoring In Great Bay, New Hampshire, 2015, Frederick T. Short

PREP Reports & Publications

SeagrassNet is a global monitoring program begun in 2001 and designed to scientifically detect and document seagrass habitat change (Short et al. 2006a, 2014). Monitoring of eelgrass (Zostera marina L.) in the Great Bay Estuary using SeagrassNet was conducted in Portsmouth Harbor between 2001 and 2009 (Short et al. 2006b, Rivers and Short 2007), and in Great Bay starting in 2007 (Short 2009). Results from SeagrassNet 2015, supported by PREP and conducted in Great Bay, are described in this report.

Eelgrass Distribution In The Great Bay Estuary And Piscataqua River For 2016, Seth Barker

PREP Reports & Publications

Eelgrass distribution in Great Bay, Little Bay, and the Piscataqua River Estuary were mapped from aerial photography acquired on August 5, 2016. The total area of eelgrass beds with 10% or greater cover and a polygon area equal to or greater than 100 square meters was 683.42 hectares or 1688.71 acres. Eelgrass polygons were coded for Assessment Zone location and the results reported in Table 1.The largest concentration of eelgrass was found in Great Bay with lesser amounts in the vicinity of Portsmouth Harbor. The total area of eelgrass was nearly identical to that mapped in 2013 though there were …

Testing Of Great Bay Oysters For Two Protozoan Pathogens, Douglas E. Grout

PREP Reports & Publications

Two protozoan pathogens, Haplosporidium nelsoni (MSX) and Perkinsus marinus (Dermo) are known to be present in Great Bay oysters. With funds provided by the Piscataqua Region Estuaries Partnership (PREP), the Marine Fisheries Division of the New Hampshire Fish and Game Department (NHFG) continues to assess the presence and intensity of both of these disease conditions in oysters from the major natural beds within the Great Bay estuarine system. Histological examinations of Great Bay oysters have also revealed other endoparasites

Monitoring Macroalgae In The Great Bay Estuary For 2015, David M. Burdick, Arthur C. Mathieson, Sydney Nick, Christopher R. Peter

PREP Reports & Publications

In 2015, five of the eight locations with fixed intertidal transects were sampled as part of the long-term effort to monitor macroalgae in the Great Bay Estuary. With the completion of the third year of the project, all eight locations have been sampled at least once, two years of data have been collected for four locations, and three years of data have been collected for one location, Monitoring results from 2015 show high levels of cover of nuisance green or red algae (Ulva and Gracilaria, respectively) at all sites sampled. Nuisance algae is characterized as fast-growing; it can interfere with …

A Changing Gulf Of Maine: Investigating The Role Of Benthic Water Temperature In Determining The Timing Of Spiny Dogfish (Squalus Acanthias) Arrival And Departure In The Gulf Of Maine, Benjamin Donald Gallo

Honors Theses and Capstones

Spiny Dogfish (Squalus acanthias) is a highly migratory elasmobranch that undergoes annual migrations along the East Coast of the United States. Spiny dogfish have been studied extensively on the West Coast, but little information currently exists on the life history of this species in the Gulf of Maine (GOM). In the last few years, commercial gillnet fishermen in the GOM have been reporting unusual catch patterns while fishing offshore, perhaps indicating an increased abundance in dogfish and an extension of the length of time that dogfish occupy the GOM in a given year. Concurrent with these changes, rising …

Eelgrass/Macroalgae Discussion Primer For Tac Activities 2016-2017, Piscataqua Region Estuaries Partnership

PREP Reports & Publications

See also: "Eelgrass Distribution and Biomass in the Great Bay Estuary for 2015" http://scholars.unh.edu/prep/354

"Eelgrass Distribution in the Great Bay Estuary for 2014" http://scholars.unh.edu/prep/352/

The issue of eelgrass and macroalgae in the Great Bay Estuary (GBE) is extremely important and complex. The purpose of this document is to clarify issues and questions to make for a more productive and informed discussion.