Marine Biology Commons^™

Over 75 Years Of Zooplankton Data From Australia, Claire H. Davies, Amelia J. Armstrong, Mark Baird, Frank Coman, Steven Edgar, Daniel J. Gaughan, Jack Greenwood, Felipe Gusmao, Natasha Henschke, J. Anthony Koslow, Sophie C. Leterme, A. David Mckinnon, Margaret Miller, Sarah Pausina, Julian Uribe Palomino, Ruben-Lee Roennfeldt, Peter Rothlisberg, Anita Slotwinski, Joanna Strzelecki, Iain M. Suthers, Kerrie M. Swadling, Sam Talbot, Mark Tonks, David H. Tranter, Jock W. Young, Anthony J. Richardson

Fisheries Research Articles

Zooplankton are the key trophic link between primary producers and fish in pelagic ecosystems. Historically, there are few zooplankton time series in Australia, with no data sets longer than two years prior to 2008. Here we compile 98 676 abundance records of more than 1000 zooplankton taxa from unpublished research cruises, student projects, published literature, and the recent Integrated Marine Observing System (IMOS). This data set covers the entire coastal and shelf region of Australia and dates back to 1938. Most records are for copepods, but there are also data for other taxa such as decapods, chaetognaths, thaliaceans, appendicularians, and …

The Influence Of Shelter, Conspecifics, And Threat Of Predation On The Behavior Of The Long-Spined Sea Urchin (Diadema Antillarum), Meredith D. Kintzing, Mark J. Butler Iv

Biological Sciences Faculty Publications

The interplay of competition and predation often affects prey habitat use, which may concentrate prey in safer areas with indirect consequences on their foraging efficiency and the effects of their foraging on the community. Predation is intense on coral reefs where competition for limited space and food is severe. The sea urchin Diadema antillarum, an inhabitant of Caribbean coral reefs, uses crevice shelters and often aggregates with conspecifics for protection against predators, which appears to reflect a conflicting balance between group defense versus competition for limited shelter. A series of laboratory experiments was used to determine how the availability of …

Dynamics And Survival Of Coral And Octocoral Juveniles Following Disturbance On Patch Reefs Of The Florida Reef Tract, Lucy Bartlett

USF Tampa Graduate Theses and Dissertations

Over the past several decades, rapid decline in adult stony-coral (comprising the Orders Scleractinia and Anthomedusae, specifically Family Milleporidae) cover has occurred concurrent with an increase in adult octocoral (Octocorallia/gorgonian) cover along the Florida Reef Tract. In January 2010, the Florida Keys experienced extremely cold air and water temperatures, below the lethal threshold for many reef organisms including corals. Very high stony-coral mortality occurred on some patch reefs. The newly-available space created by this disturbance event provided the opportunity for recruitment and settlement of new coral larvae and other reef organisms.

The goal of this study was to examine post-disturbance …

Assessments Of Surface-Pelagic Drift Communities And Behavior Of Early Juvenile Sea Turtles In The Northern Gulf Of Mexico, Robert F. Hardy

USF Tampa Graduate Theses and Dissertations

Knowledge of species distribution and habitat associations are essential for conservation measures. Such information is lacking for many marine species due to their occupancy of broad and ephemeral habitats that are difficult to access for study. Sea turtles, specifically the surface-pelagic juvenile stage of some species, are a group for which significant knowledge gaps remain surrounding their distribution and habitat use. Recent research has confirmed the long-standing hypothesis that the surface-pelagic juvenile stage occurs within surface-pelagic drift communities (SPDC). Within the North Atlantic and surrounding basins, the holopelagic macroalgae Sargassum spp. dominates SPDC and serves as a remotely-detectable indicator of …

The Status Of Fishes In The Missouri River, Nebraska: Lake Sturgeon (Acipenser Fulvescens), Kirk D. Steffensen, Sam Stukel, Dane A. Shuman

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

Lake Sturgeon (Acipenser fulvescens) occurrences in the Missouri River along Nebraska’s eastern border are historically sporadic and rare. Presently, the wild Lake Sturgeon population in this river reach may be extirpated. A Recovery Program initiated by the Missouri Department of Conservation (MDC) has stocked almost 150,000 hatchery-reared Lake Sturgeon into the lower Missouri River at several sites in Missouri. As a result, the number of Lake Sturgeon collected has increased. Since monitoring began in 2003, no Lake Sturgeon have been collected above Gavins Point Dam while 40 fish were collected downstream of Gavins Point Dam. The majority of …

Octopus Tetricus (Mollusca: Cephalopoda) As An Ecosystem Engineer, David Scheel, Peter Godfrey-Smith, Matthew Lawrence

Publications and Research

The Sydney octopus (Octopus tetricus) occurs in unusual numbers on a shell bed of its prey remains that have accumulated as an extended midden where additional octopuses excavate dens. Here, O tetricus are ecosystem engineers, organisms that modulate availability of resources to other species and to their own species by causing physical state changes in materials. A community of invertebrate grazers and scavengers has developed on the shell bed. Fishes are attracted to the shell bed in numbers significantly greater than in nearby habitats. Large predators, including wobbegong sharks, were attracted to and fed on concentrations of fish, inhibiting the …

Nitrogen, Phosphorus, And Suspended Solids Concentrations In Tributaries To The Great Bay Estuary Watershed In 2014, Matthew A. Wood

PREP Reports & Publications

Nitrogen, phosphorus, and sediment loads to the Great Bay Estuary are a constant concern. The Piscataqua Region Estuaries Partnership (PREP) calculates the nitrogen load from tributaries to the Great Bay Estuary for its State of Our Estuaries reports. Therefore, the purpose of this study was to collect representative data on nitrogen, phosphorus, and suspended sediment concentrations in tributaries to the Great Bay Estuary in 2014. The study design followed the tributary sampling design which was implemented by the New Hampshire Department of Environmental Services between 2001 and 2007 and sustained by the University of New Hampshire from 2008 to the …

Iron Sources And Dissolved-Particulate Interactions In The Seawater Of The Western Equatorial Pacific, Iron Isotope Perspectives, M. Labatut, F. Lacan, C. Pradoux, J. Chmeleff, A. Radic, J. W. Murray, F. Poitrasson, Anne M. Johansen, F. Thil

All Faculty Scholarship for the College of the Sciences

This work presents iron isotope data in the western equatorial Pacific. Marine aerosols and top core margin sediments display a slightly heavy Fe isotopic composition (δ⁵⁶Fe) of 0.33 ± 0.11‰ (2SD) and 0.14 ± 0.07‰, respectively. Samples reflecting the influence of Papua New Guinea runoff (Sepik River and Rabaul volcano water) are characterized by crustal values. In seawater, Fe is mainly supplied in the particulate form and is found with a δ⁵⁶Fe between −0.49 and 0.34 ± 0.07‰. The particulate Fe seems to be brought mainly by runoff and transported across continental shelves and slopes. …

Stable Isotopes In Fish Eye Lenses As Potential Recorders Of Trophic And Geographic History, Amy A. Wallace, David J. Hollander, Ernst B. Peebles

Marine Science Faculty Publications

We evaluated eye lenses as potential recorders of stable isotope histories in fish because they consist of metabolically inert optical proteins that are deposited in successive, concentric circles (laminae) much like otolith circuli and tree rings. We conducted four different tests on lenses from red snapper, red grouper, gag, and white grunt. The first test was a low-resolution screening of multiple individuals (4–5 radial groups of laminae per lens, all species except white grunt). Along the radial axis, all individuals exhibited substantial isotopic variability. Red snapper individuals separated into two groups based on δ¹⁵N and gag separated into …

Measuring The Socio-Economic Characteristics Of A Lionfish Derby Event, Adam Nardelli, Stephanie Green, L. Akins, David W. Kerstetter

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

No abstract provided.

Eelgrass Distribution In The Great Bay Estuary For 2013, Frederick T. Short

PREP Reports & Publications

Executive Summary Headlines:

o Great Bay lost 21% of its eelgrass from 2012 to 2013.

o As of 2013, the Great Bay Estuary has lost 50% of its eelgrass since 1996.

Once again, eelgrass in the Great Bay Estuary declined in both distribution and biomass between 2012 and 2013, continuing the long-term trend of eelgrass loss. In 2013, Great Bay itself lost over 20% of its eelgrass (333 acres) and biomass decreased, amounting to about 400 tons, down from 1600 tons in 1996. These eelgrass losses are alarming and not sustainable. In Great Bay, eelgrass distribution has declined 49% since …

Effect Of High Pressure On Hydrocarbon-Degrading Bacteria, Martina Schedler, Robert Hiessl, Ana Gabriela Valladares Juárez, Giselher Gust, Rudolf Müller

C-IMAGE Publications

The blowout of the Deepwater Horizon in the Gulf of Mexico in 2010 occurred at a depth of 1500 m, corresponding to a hydrostatic pressure of 15 MPa. Up to now, knowledge about the impact of high pressure on oil-degrading bacteria has been scarce. To investigate how the biodegradation of crude oil and its components is influenced by high pressures, like those in deep-sea environments, hydrocarbon degradation and growth of two model strains were studied in high-pressure reactors. The alkane-degrading strain Rhodococcus qingshengii TUHH-12 grew well on n-hexadecane at 15 MPa at a rate of 0.16 h(-1), although slightly slower …

Predation Thresholds In Marine Microbial Communities Applied To Environments With Low Prey Abundances, Bonnie Bailey

OES Theses and Dissertations

Prokaryotes (Bacteria and Archaea) comprise the largest component of biomass in the world's oceans. Their abundances are controlled by resource availability, viral infections and protist grazing. Many pico- and nano-eukaryotic predators grow almost as quickly as their prey, and greatly increase in numbers as soon as their prey do, leading in tum to depletion in prokaryotes. It is still unclear however, as to what extent microbial predators are able to feed in low prey environments, most prominently in the largest biome on Earth, the deep sea (below l 000 m depth). It has been hypothesized that in low prey environments, …

First Record Of The Tropical House Gecko Hemidactylus Mabouia (Moreau De Jonnès, 1818) In Texas, Alejandro Fierro-Cabo, August Rentfro

School of Earth, Environmental, & Marine Sciences Faculty Publications

Invasions of the tropical house gecko Hemidactylus mabouia (Moreau de Jonnes, 1818) in the tropical Americas are well documented. While this gecko has been reported as well established and expanding its range in Florida, here we document the first record in the United States outside of this state. We detected a small reproducing population in Cameron County, Brownsville, Texas. We expect a rapid colonization of buildings by this species in southern Texas. We consider that this potential invasion poses novel obstacles to the continued presence of the earlier invasive Mediterranean gecko Hemidactylus turcicus (Linnaeus, 1758) across Texas

Recruitment Patterns Of Juvenile Fish At An Artificial Reef In The Gulf Of Mexico, Rachel Noel Arney

Theses and Dissertations - UTB/UTPA

In 2011, the Texas Parks and Wildlife Department deployed 4,000 culverts as an artificial reef off Port Mansfield, TX to serve as habitat for sport fish species in the Gulf of Mexico. The aim of this study was to assess juvenile fish recruitment at particular culvert densities among the reef. Standard monitoring units for the recruitment of reef fish (SMURFs) were used in this study and acted as sampling devices. SMURFs were placed at thirteen sampling stations among four different reef patch densities and sampled repeatedly from 2013-2014. Culvert densities included stations with: zero culverts, 1-50 culverts, 51-100 culverts, and …

Persistence And Change In Community Composition Of Reef Corals Through Present, Past, And Future Climates, Robert Van Woesik, Peter J. Edmunds, Mehdi Adjeroud, Marissa L. Baskett, Iliana B. Baums, Ann F. Budd, Robert C.C. Carpenter, Nicholas S. Fabina, Tungyung Fan, Eric C. Franklin

Ocean Engineering and Marine Sciences Faculty Publications

The reduction in coral cover on many contemporary tropical reefs suggests a different set of coral community assemblages will dominate future reefs. To evaluate the capacity of reef corals to persist over various time scales, we examined coral community dynamics in contemporary, fossil, and simulated future coral reef ecosystems. Based on studies between 1987 and 2012 at two locations in the Caribbean, and between 1981 and 2013 at five locations in the Indo-Pacific, we show that many coral genera declined in abundance, some showed no change in abundance, and a few coral genera increased in abundance. Whether the abundance of …

Interannual Variability Of Wintertime Temperature On The Inner Continental Shelf Of The Middle Atlantic Bight, Thomas Connolly, Steven Lentz

Faculty Publications

The shallow depth of the inner continental shelf allows for rapid adjustment of the ocean to air-sea exchange of heat and momentum compared with offshore locations. Observations during 2001–2013 are used to evaluate the contributions of air-sea heat flux and oceanic advection to interannual variability of inner-shelf temperature in the Middle Atlantic Bight. Wintertime processes are important for interpreting regional interannual variability at nearshore locations since winter anomalies account for 69–77% of the variance of the annual anomalies and are correlated over broad along-shelf scales, from New England to North Carolina. At the Martha's Vineyard Coastal Observatory on the 12 …

Assessing Climate Variability Effects On Dengue Incidence In San Juan, Puerto Rico, Pablo Méndez-Lázaro, Frank E. Muller-Karger, Daniel Otis, Matthew J Mccarthy, Marisol Peña-Orellana

Marine Science Faculty Publications

We test the hypothesis that climate and environmental conditions are becoming favorable for dengue transmission in San Juan, Puerto Rico. Sea Level Pressure (SLP), Mean Sea Level (MSL), Wind, Sea Surface Temperature (SST), Air Surface Temperature (AST), Rainfall, and confirmed dengue cases were analyzed. We evaluated the dengue incidence and environmental data with Principal Component Analysis, Pearson correlation coefficient, Mann-Kendall trend test and logistic regressions. Results indicated that dry days are increasing and wet days are decreasing. MSL is increasing, posing higher risk of dengue as the perimeter of the San Juan Bay estuary expands and shorelines move inland. Warming …

Mammalian Keratin Associated Proteins (Krtaps) Subgenomes: Disentangling Hair Diversity And Adaptation To Terrestrial And Aquatic Environments, Imran Khan, Emanuel Maldonado, Vitor Vasconcelos, Stephen J. O'Brien, Warren E. Johnson, Agostinho Antunes

Marine & Environmental Sciences Faculty Articles

Background: Adaptation of mammals to terrestrial life was facilitated by the unique vertebrate trait of body hair, which occurs in a range of morphological patterns. Keratin associated proteins (KRTAPs), the major structural hair shaft proteins, are largely responsible for hair variation.

Results: We exhaustively characterized the KRTAP gene family in 22 mammalian genomes, confirming the existence of 30 KRTAP subfamilies evolving at different rates with varying degrees of diversification and homogenization. Within the two major classes of KRTAPs, the high cysteine (HS) subfamily experienced strong concerted evolution, high rates of gene conversion/recombination and high GC content. In contrast, high glycine-tyrosine …

Estimating Migration Rates Between Populations Of Zostera Marina In The San Francisco Bay, Elizabeth S. Gutierrez

STAR Program Research Presentations

Eelgrass (Zostera marina) is a highly clonal marine angiosperm that can also reproduce sexually through flowering and seed formation. In a previous study, Fst values from six microsatellite loci suggested that a perennial San Francisco Bay subpopulation at Point Molate (Richmond, California) was able to recover from a drastic 2006 die-off through seed recruitment from neighboring eelgrass subpopulations, changing its reproductive strategy from clonal to sexual. Although Fst measures continue to be widely used in population genetics, the assumptions under which they operate are not always appropriate given certain circumstances, such small population sizes and/or asymmetrical migration rates. Our summer …

Possible Recovery Of Acropora Palmata (Scleractinia:Acroporidae) Within The Veracruz Reef System, Gulf Of Mexico: A Survey Of 24 Reefs To Assess The Benthic Communities, Elizabeth Anne Larson, David S. Gilliam, Mauricio Lopez Padierna, Brian K. Walker

Marine & Environmental Sciences Faculty Articles

Recent evidence shows that Acropora palmata within the Veracruz Reef System, located in the southwestern Gulf of Mexico, may be recovering after the die off from the flooding of the Jamapa River and a dramatic cold water event in the 1970s. Since this decline, few surveys have documented the status of A. palmata. The 28 named reefs in the system are divided into 13 northern and 15 southern groups by the River. Between 2007 and 2013, we surveyed 24 reefs to assess the benthic communities. Seven of the 11 reefs surveyed in the northern group and all in the …

Modeling Flightless Galapagos Seabirds As Impacted By El Nino And Climate Change, Brian Seth Putman

HCNSO Student Theses and Dissertations

Noteworthy species endemic to the Galapagos Islands off Ecuador are two flightless birds, the Galapagos Penguin (Spheniscus mendiculus) and Flightless Cormorant (Phalacrocrax harrisi). Both adapted increased swimming ability at the cost of flight. This however has limited their ability to find richer feeding grounds in times of low resource availability, or to escape potential predators. Their population numbers, though small, were stable. Stress on this stability has increased since human arrival. Various invasive species from pets, farm animals and rats to even mosquito vectors of avian disease accompanied humans. . El Nino Southern Oscillation or ENSO …

A Rapid Response Study Of The Hercules Gas Well Blowout, Samantha Joye, Joseph P. Montoya, Steven Murawski, Tamay Özgökmen, Terry L. Wade, Raffaele Montuoro, Brian J. Roberts, David Hollander, Wade H Jeffrey, Jeffrey Chanton

C-IMAGE Publications

On 20 April 2010, the Deepwater Horizon drilling rig lost well control while drilling at the Macondo prospect in the Gulf of Mexico. At the time of the Macondo blowout, the academic scientific community was ill prepared to initiate and rapidly conduct the necessary coordinated interdisciplinary studies of the environments around the discharge area.

Molecular Characterization Of Two Opecoelid Trematodes From Fishes In The Gulf Of Mexico, With A Desceiption Of A New Species Of Helicometra, Michael J. Andres, Candis L. Ray, Eric E. Pulis, Stephen S. Curran, Robin M. Overstreet

Faculty Publications

The plagioporine opecoelids Helicometra fasciata (Rudolphi, 1819) Odhner, 1902, and Macvicaria crassigula (Linton, 1910) Bartoli, Bray, and Gibson, 1989 have been reported from fishes in expansive geographic regions, disjointed from their type localities. New material of M. crassigula was collected from near its type locality as well as specimens resembling Helicometra fasciata sensu lato from three triglids in the Gulf of Mexico. Comparisons of the ribosomal DNA (rDNA) sequences, comprising the partial 18S rDNA, internal transcribed spacer region (= ITS1, 5.8S, and ITS2), and partial 28S rDNA gene, from M. crassigula and Helicometra fasciata sensu lato in the Gulf of …

A Record Of Anthropogenic Effects On Sedimentation In The Manatee River, Florida, Patrick Schwing, Ashanti Johnson

Marine Science Faculty Publications

Increased sedimentation rates have been attributed to increased anthropogenic activity in watersheds throughout Florida and many parts of the world. The Manatee River, located on the west coast of Florida (USA), like many other coastal watersheds, has experienced depletion in natural resources, increased nutrient loading, and increased pollution. LARs (linear accumulation rates) from watersheds throughout Florida suggest that anthropogenic activity increased bulk sedimentation by as much as 4-fold. The objective of this study was to construct a record of sedimentation and improve upon previous studies by determining individual sedimentary constituent MARs (mass accumulation rates) based on short lived radioisotopes (210Pb …

Scaling Of Olfactory Antennae Of The Terrestrial Hermit Crabs Coenobita Rugosus And Coenobita Perlatus During Ontogeny, Lindsay D. Waldrop, Roxanne M. Bantay, Quang V. Nguyen

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Although many lineages of terrestrial crustaceans have poor olfactory capabilities, crabs in the family Coenobitidae, including the terrestrial hermit crabs in the genus Coenobita, are able to locate food and water using olfactory antennae (antennules) to capture odors from the surrounding air. Terrestrial hermit crabs begin their lives as small marine larvae and must find a suitable place to undergo metamorphosis into a juvenile form, which initiates their transition to land. Juveniles increase in size by more than an order of magnitude to reach adult size. Since odor capture is a process heavily dependent on the size and speed …

Silica Cycling In The Ultra-Oligotrophic Eastern Mediterranean Sea, M. D. Krom, N. Kress, Kent A. Fanning Ph.D.

Marine Science Faculty Publications

Although silica is a key plant nutrient, there have been few studies aimed at understanding the Si cycle in the eastern Mediterranean Sea (EMS). Here we use a combination of new measurements and literature values to explain the silicic acid distribution across the basin and to calculate a silica budget to identify the key controlling processes. The surface water concentration of ∼1 μM, which is unchanging seasonally across the basin, was due to the inflow of western Mediterranean Sea (WMS) water at the Straits of Sicily. It does not change seasonally because there is only a sparse population of diatoms …

Modeling Maine’S Rockweed Harvest, Meagan Hennessey

Journal of Environmental and Resource Economics at Colby

Currently, Maine is in a political struggle over the best way to manage the harvesting of Rockweed, or Ascophyllum nodosum. As the dominant macro algae along the state’s rocky intertidal zone it supports over 150 different species, meaning its loss could impact food web stability, protection of endangered species, and support of economically viable harvests. This work takes parameters found in the literature to create a Stella model, which is then manipulated to explore the relative impact of possible management strategies. It is found that a strictly accurate model is not possible to create given the current biological knowledge and …

Geochemical Analysis Of Eolian Fluxes During The Transition From Greenhouse To Icehouse Conditions In Equatorial Pacific., Daniel Nicholas Miller

Theses and Dissertations

To assess the atmospheric conditions during times of differing pole to equator thermal gradients through the middle Eocene to early Oligocene, 42 to 30 Ma, samples from deep-sea sediment cores U1331, U1332, U1333 from IODP Expedition 320/321 in the eastern equatorial Pacific (EEP) have been chemically leached to isolate the operationally defined eolian dust (ODED; <63 μm fraction). The ODED was analyzed for neodymium (Nd) isotopic compositions and rare earth element (REE) concentrations in order to determine the provenance of the ODED fraction and to elucidate the environmental conditions (e.g. predominant wind patterns) during deposition over the interval of study. The variations in the ODED fraction are expected to be controlled by changes in sources delivered via eolian input. However, negative cerium anomalies in the Post Achaean Australian Shale (PAAS) normalized rare earth element profiles of the ODED show a biasing geochemical seawater phase to the ODED signature. It is found that εNd values and cerium anomalies (Ce/Ce*) of ODED are consistent with fossil fish teeth values that record bottom water signatures from the same location and time period until ~36-37 Ma; around the Priabonian/Bartonian boundary marked by increased thermal gradients due to the emplacement of high elevation glaciers on Antarctica (Scher et. al., 2014). Moreover, the more negative cerium anomalies correlate to more radiogenic εNd values. The geochemical seawater signature in the ODED samples is believed to be caused by a change in sedimentary phase regulated by the spatial paleoposition of the sites relative to the biological high productivity zone and/or the depth of the CCD. Subsequently these regulators on the sedimentary phases of the ODED were investigated for biasing the geochemical signatures of the ODED, assumed to be changes in sources thereby provenance. Together, the Nd and REE results from the study temporally indicate that the ODED fraction may be a mixing between two sources, that of a biasing biogenic and/or authigenic source that records seawater conditions, and that of an older, less radiogenic continental source, inferred as Asian loess, as an increased thermal gradient prevails over the course of the study. Further research needs to be performed to make more robust and conclusive linkages between sources, mixing of sources, and atmospheric eolian delivery patterns, highlighting the necessity for a better understanding of atmospheric conditions during important climatic events throughout the history of the Earth.

Seagrasses In The Age Of Sea Turtle Conservation And Shark Overfishing, Michael Heithaus, Teresa Alcoverro, Rohan Arthur, Derek A. Burkholder, Kathryn A. Coates, Marjolijn J. A. Christianen, Nachiket Kelkar, Sarah A. Manuel, Aaron Wirsing, W. Judson Kenworthy, James W. Fourqurean

HCAS Student Articles

Efforts to conserve globally declining herbivorous green sea turtles have resulted in promising growth of some populations. These trends could significantly impact critical ecosystem services provided by seagrass meadows on which turtles feed. Expanding turtle populations could improve seagrass ecosystem health by removing seagrass biomass and preventing of the formation of sediment anoxia. However, overfishing of large sharks, the primary green turtle predators, could facilitate turtle populations growing beyond historical sizes and trigger detrimental ecosystem impacts mirroring those on land when top predators were extirpated. Experimental data from multiple ocean basins suggest that increasing turtle populations can negatively impact seagrasses, …