Marine Biology Commons^™

Long-Term Analysis Of Pm2.5 Elemental Composition And Source Contributions In Coastal Urban Environments Of Corpus Christi And Houston In Texas, Sai Deepak Pinakana, Jeremy A. Sarnat, Amit U. Raysoni

School of Earth, Environmental, & Marine Sciences Faculty Publications

Long-term assessments of fine particulate matter play a key role in identifying persistent and emerging emission contributors. Coastal urban areas are highly susceptible to transboundary dust and wildfire events in addition to local pollution sources. Multi-decadal assessments in these regions using chemical speciation data could offer insights into major pollutant sources and their trends. This study utilizes nearly two decades of PM2.5 elemental composition data at two major coastal cities in Texas: Houston and Corpus Christi. Fourteen trace elements were analyzed to characterize the seasonal variability and long-term source evolution using a combination of Spearman’s correlation analysis, principal component analysis, …

Tissue-Specific Heavy Metal Accumulation And Sediment–Mangrove Dynamics In Port Everglades, Florida, Dimitrios Giarikos, Amy Hirons, Jason Gershman, Sophie Welch

SECLER Data

Coastal wetlands near industrialized waterways face increasing heavy metal contamination, yet the role of mangroves as biogeochemical buffers remains poorly understood. This study quantified 16 heavy metals in sediments and red mangrove (Rhizophora mangle) tissues (roots, branches, and leaves) across four sites near Port Everglades, Florida, examining tissue-specific partitioning, contamination patterns, and sediment-to-plant transfer. The South Turning Basin (STB) was the principal contamination hotspot, with geometric mean (GM) concentrations of arsenic (As; 27.8 µg/g) and zinc (Zn; 203 µg/g) exceeding threshold effect levels, while Cu exceeded its probable effect level (PEL; 193 µg/g). Mercury (Hg) exceeded its PEL …

2026 Workshop On Bridging The Gaps: Tackling Microplastics And Nanoplastics Challenges In Coastal Ecosystems, Shenghua Wu, Kaushik Venkiteshwaran, Melike Dizbay-Onat, Alexandra Stenson, Jinhui Wang, Tina Miller-Way, Ebenezer Nyadjro, Bhuvnesh Bharti, John Weinstein, Yi Bao, Shihui Shen, Valerie Longa, Shenghua Zha, John Cleary, Marty Lind

Workshops

This report presents the findings from the 2026 Workshop on Tackling Microplastics and Nanoplastics (MNPs) in Coastal Ecosystems, which took place in Mobile, Alabama. More than 140 experts from universities, government, industry, and community organizations gathered to address the increasing issue of MNPs in coastal regions.

Applications Of Machine Learning In Enhancing Evaporation Estimation For Small Reservoirs: A Case Study In Semi-Arid South Texas, Syed Muhammad F Abdullah, Chu-Lin Cheng, Jude A. Benavides, Jungseok Ho, Rafael M. Almeida

School of Earth, Environmental, & Marine Sciences Faculty Publications

Small reservoirs in semi-arid regions experience substantial evaporative losses but are rarely monitored at daily scales. A multi-reservoir machine learning (ML) framework was developed to estimate daily open-water evaporation. Empirical models (Penman, Penman-Monteith, Priestley-Taylor, Bowen Ratio Energy Budget) andabenchmark combination method (Daily Lake Evaporation Model-DLEM) were compared against ML models. Predictors combined gridded meteorology (gridMET) with reservoir attributes (surface area, average depth, maximum depth, and fetch). ML models (Random Forest-RF, Decision Tree-DT, K-Nearest Neighbor-KNN, and Support Vector Regression-SVR) were trained on four reservoirs using data from 2018 to 2025. Results from ML models were further validated using both DLEM and …

Innovative Applications And Development Paths Of Digital Earth Technology In Marine Environmental Support, Junyi Liu, Xiongfei Liu, Zongji Wang, Zhihong Zeng, Huiping Xie, Siye Liu

Bulletin of Chinese Academy of Sciences (Chinese Version)

The convergence of Digital Earth technologies and the field of marine environmental support represent a significant trend in global scientific and technological advancement. In response to the characteristics of marine environmental data such as sparsity, dynamic complexity, and multi-scale interdependence, and by integrating the evolution of international Digital Earth technology with China’s independent innovation practices, this study constructs three core methodological paradigms. The first is the element-integrated ontology, which proposes a hybrid representation paradigm of “spatiotemporal embedded field + ontology” to achieve integrated and dynamically evolving modeling of marine physical environments alongside geological, biological, chemical, and other multidimensional elements. The …

Thoughts On Accelerating The Capture Of Technological High Ground For Precise Marine Environmental Assurance, Yuantao Wu, Mingyue Wan, Deke Chen, Danhong Dong, Yao Yu, Miao Chen

Bulletin of Chinese Academy of Sciences (Chinese Version)

The marine environment serves as a critical foundation for the development, utilization, protection, and governance of the ocean. Marine environmental support holds significant strategic importance for the exploitation of marine resources, ecological and environmental conservation, and the safeguarding of maritime rights and interests. It has become a strategic high ground in the new wave of marine technological innovation and development. This paper reviews the current status of global marine environmental support technologies, with a focus on the establishment and capabilities of the comprehensive “observation–forecasting–application–assessment” precision support technology system for the marine environment developed by the Chinese Academy of Sciences. It …

Frontiers In Ocean Non-Equilibrium Dynamics And Challenges In Operational Oceanography Application, Yuhong Zhang, Yan Du, Tianyu Wang, Minyang Wang, Qin Duan, Xinlong Li, Yuhang Zheng, Yifan Xia, Shilin Tang, Yineng Li, Jianping Yin

Bulletin of Chinese Academy of Sciences (Chinese Version)

Ocean circulation exhibits complex multiscale dynamics, among which non-equilibrium processes, marked by transient behavior, strong perturbations, and pronounced nonlinearity, are of particular importance for maritime environmental support. However, limited observational capability has long constrained the study of subsurface non-equilibrium dynamics, leaving numerical models insufficiently validated and positioning this issue at the forefront of modern physical oceanography. Artificial intelligence (AI) offers a promising pathway to overcome this bottleneck. Built on this concept, the “iEddy” AI large ocean model can efficiently reconstruct high-resolution, high-accuracy three-dimensional temperature, salinity, and velocity from sea-surface remote sensing data, demonstrating strong capability in capturing non-equilibrium ocean currents …

Current Status And Prospects Of Ocean Data Reanalysis, Chuanyu Liu, Fan Wang

Bulletin of Chinese Academy of Sciences (Chinese Version)

Ocean data reanalysis (ODR) is a technique that combines ocean observational data with ocean circulation models to produce gridded data with higher accuracy and greater spatiotemporal coverage. The generated reanalysis data serve as a foundational dataset for conducting oceanographic research and developing artificial intelligence-based large ocean models. This study reviews the technical approaches of ODR, the current status of global and regional ocean data reanalysis systems developed in the world, and puts forward recommendations for the development of China's ocean reanalysis system.

Development Trends And Implications Of Muti-Objective Marine Environmental Forecasting Technology, Yineng Li, Yuhang Zhu, Shiqiu Peng, Zhiwu Chen, Xing Wei, Junmin Li, Shaodian Li, Peiwei Xie, Jiawen Liao, Yankun Gong, Shilin Tang, Shuqun Cai

Bulletin of Chinese Academy of Sciences (Chinese Version)

With the continuous expansion of global maritime activities and the steady advancement of the “maritime power” strategy, marine environmental security has become a top priority for China. In deep-sea areas, various environmental parameters such as temperature, salinity, sound velocity, wave dynamics, internal solitary waves, and nearshore rip currents play a crucial role in navigation safety and underwater equipment operations. Nevertheless, traditional single-parameter forecasting models are no longer sufficient to meet the demands of multi-objective environmental protection. As a result, there is a growing need for a high-resolution, multi-objective forecasting system that integrates basic oceanographic element predictions (such as temperature, salinity, …

Transparent West-Pacific: Frontier Advances In Earth System Science, Lixin Wu, Jiwei Tian, Weidong Sun, Hailong Liu, Tianyu Chen, Zhimian Cao, Zhao Jing

Bulletin of Chinese Academy of Sciences (Chinese Version)

The West-Pacific hosts a well-developed trench-arc-basin system characterized by intense fluid–solid interactions, making it an ideal region for studying multi-sphere interactions within the Earth system. Research on cross-sphere dynamic processes and material-energy cycles in the West-Pacific not only represents a core frontier in Earth System Science, but also crucial to addressing major strategic needs, such as global climate change response, sustainable use of marine resources, and protection of the deep-sea environment. This article highlights key advances achieved under the Major Program on West-Pacific Earth System Multispheric Interactions (WESPMI), in areas including multi-scale oceanic interactions, cross-sphere material exchange, plate subduction and …

Satellite-Derived Bathymetry In Island Coastal Zones: Technology, Shilin Tang, Yuye Huang, Yongming Liu, Jianping Yin, Deke Chen, Ronggang Huang, Shuang Li

Bulletin of Chinese Academy of Sciences (Chinese Version)

Shallow bathymetry data constitute the core foundational information underpinning the ecological, resource, and strategic values of island and coastal zones. Satellite-derived bathymetry has evolved into a key technical means for large-scale acquisition of shallow bathymetry information. Focusing on satellite-based lidar bathymetry, optical imaging bathymetry, and synthetic aperture radar (SAR) bathymetry, this study systematically summarizes the core principles, applicable scenarios, technical strengths, and inherent limitations of each technology. It is shown that satellite-derived bathymetry has undergone an evolutionary shift from theoretical construction to practical application, and from single-method, single-data-source approaches to multi-technology, multi-source data fusion frameworks. In the future, to meet …

From Sediment To Mangrove: Tissue-Specific Metal Accumulation In Red Mangroves Of Southeastern Florida, Sophie Welch

Honors Theses

Coastal wetlands near industrialized waterways face increasingly heavy‐metal contamination, posing risks to benthic communities and food webs. Mangroves can influence metal cycling through sediment trapping, root‐zone sequestration, and internal physiological regulation, yet their effectiveness in urbanized systems remains debated. This study quantified concentrations of 17 heavy metals in sediments and mangrove tissues from four sites near Port Everglades, Florida, examined tissue‐specific partitioning, spatial and temporal contamination patterns, and examined the mangroves’ role in mediating metal loads. Ecological risk metrics identified STB as a contaminant hotspot with exceedances of TEL values across multiple elements (Ni, Pb, and Zn) as well as …

Seagrass Preference Among Pinfish In The Lower Laguna Madre, Nathaniel Garza

Theses and Dissertations

Pinfish (Lagodon rhomboides) is a common estuarine fish species found from Massachusetts to the Yucatan, Mexico. As juveniles, pinfish spend a significant portion of their life in coastal seagrasses which provide both shelter from predators and food. Along the Texas coast, there are three major species of seagrass- turtle grass (Thalassia testudinum), manatee grass (Syringodium filiforme) and shoal grass (Halodule wrightii) that differ in structural complexity. The goal of this study was to determine if pinfish associate more with one seagrass species than the others. A year-long field study was completed using twelve sample sites in the Lower Laguna Madre, …

Tides, Tourists, And Tails: Exploring Human-Wildlife Overlap On The Homer Spit, Alaska, Serena Seiler

Masters Theses & Specialist Projects

Coastal areas present unique challenges for human-wildlife coexistence due to their shared use by people and marine species. The Homer Spit in Homer, AK (59.6481° N, 151.5299° W) is a projection of land into Kachemak Bay on which lodging, restaurants, campgrounds, RV parks, fishing, and a variety of coastal activities exist or occur, especially during the summer months. Two of the most popular nearshore marine mammals that attract visitors are sea otters (Enhydra lutris) and harbor seals (Phoca vitulina). These two species spend time swimming, foraging, and resting around the Spit, potentially resulting in co occurrences with humans. Using a …

Assessing Effectiveness Of Runnel Restoration In New England Salt Marsh Habitats, David M. Burdick, Grant Mckown, Gregg Moore, Jenny Gibson, Wenley Ferguson, John Herbert, Nancy Pau, Susan Adamowicz, Geoff Wilson

Faculty Publications

Rising sea levels that increase flooding in salt marshes recovering from hydrologic impairments is reducing nesting habitat for salt marsh sparrows. Abandonment of colonial farming practices (1600s through 1900s) has resulted in large, waterlogged basins characterized by shallow depressions (pannes) dominated by short-form Spartina alterniflora and unvegetated megapools that are subsiding. A relatively new technique designed to provide regular tidal flooding and drainage to the waterlogged basins that have formed on the marsh is runnelling – creation of shallow hydrologic features on the marsh surface. Will runnels result in revegetation of pannes and pools with productive perennial grasses that are …

Reevaluating The Role Of Ruppia Maritima: Recruitment Dynamics And Habitat Use By Blue Crabs (Callinectes Sapidus) And Associated Benthic Fauna In A Mid-Atlantic Seagrass Community, Delaney St. Pierre

Theses, Dissertations and Culminating Projects

The value of seagrasses as essential fish habitat is well recognized, but limited data exist on the value of one particular species, Ruppia maritima (widgeon grass), as habitat for fish and invertebrates. During the summer of 2024, I evaluated R. maritima, Zostera marina (eelgrass) and mixed beds to assess their relative value as habitat in Barnegat Bay, New Jersey. Results from throw traps indicated significant monthly differences for pipefish, gobies, blue crabs, grass shrimp, and sand shrimp, driven by active recruitment events. When evaluating habitat type, we found no taxa that were significantly more abundant in Z. marina habitat as …

Western Australia’S Marine Heatwave Update - 27 March 2025, Department Of Primary Industries And Regional Development, Western Australia, Arani Chandrapavan

Marine Heatwave Notification Reports

No abstract provided.

Linking Water Quality And Climate Change To Long-Term Trends In Species Abundance In Norwalk Harbor, Viktoria Savatorova, Aidan Kieft, Nicole C. Spiller, Kasey Burns

Spora: A Journal of Biomathematics

This study examines the effects of environmental changes on fish populations in Norwalk Harbor, focusing on winter flounder (Pseudopleuronectes americanus), cunner (Tautogolabrus adspersus), northern pipefish (Syngnathus fuscus), and naked goby (Gobiosoma bosci) as examples of species responding to climate-related shifts. We analyze how water temperature, salinity, and dissolved oxygen correlate with fish abundance. To assess statistically significant differences in catch per unit effort (CPUE) across harbor regions, we applied the Kruskal-Wallis test followed by Dunn's post-hoc test. Seasonal variations in CPUE were examined by comparing monthly catch data for each species. K-means …

Tracing The Sources Of Nitrogen In Submarine Groundwater Discharge And Primary Producers In The Great South Bay Estuary, Nia H. Rene

Dissertations, Theses, and Capstone Projects

The primary aim of this research was to elucidate the impact of submarine groundwater discharge (SGD) and septic effluent on coastal primary producers in the Great South Bay (GSB). The study focused on three main objectives: assessing the impact of precipitation patterns on SGD, tracing nitrogen sources into the GSB, and determining the impact of these nitrogen sources on coastal primary producers. The research revealed that current precipitation patterns significantly influence SGD across different seasons, highlighting the seasonal variability in groundwater discharge and its implications for nutrient loading in coastal waters. A suite of tracers was employed to identify and …

The Coral Porites Lutea As A Regional And Local Proxy For Sea Surface Temperature In Hong Kong, And The Effects Of Typhoons On Proxy Accuracy, Brenna E. Bell

CMC Senior Theses

Proxies related to the climate have been used as a method to observe long-term changes occurring underwater that span long before we had the capability to measure environmental characteristics. Porites corals have been used as sea surface temperature (SST) proxies due to annual cyclicity in their growth process and mineral composition. As the climate differs globally, it is important to ensure that proxies are accurate regardless of location to measure changes in climate. This study examines Porites lutea corals as an SST proxy in the region of Hong Kong. Potential local differences in SST proxy calibrations within the surrounding waters …

Using Bivalves As An Indicator For Fecal Bacteria, Kamala Chuss

Honors Scholar Theses

This project focuses on the integration of fecal bacteria from warm-blooded animals into bivalve tissue, and the utilization of bivalves as an indicator for fecal bacteria in waterways. Bivalves may give a more representative long-term average of fecal bacteria in water as compared to direct water testing. The primary objective is to create a standard operating procedure to use bacterial testing of bivalves as a proxy for bacteria concentration in the water. This method can be used in places where bivalves do not already exist by adding them to a body of water, or by collecting bivalves that already exist …

Phytoplankton Responses To Changing Irradiance And Carbon Fertilization, Alison Siersma

Graduate Theses and Dissertations (2019 - present)

Phytoplankton play a crucial role in marine ecosystems due to their innate ability to fix carbon. As atmospheric CO2 levels continue to rise from fossil fuel combustion, the resulting increase in dissolved CO2 and the concurrent decrease in ocean pH are likely to impact the phytoplankton community. The response of phytoplankton to elevated CO2 can vary significantly among species and environmental conditions (e.g. light, temperature, nutrient availability). To address these variations, an experiment was conducted using a controlled photobioreactor system, maintaining high and low light, constant temperature, nutrient levels, and two pCO2 concentrations. This study focused on two regionally relevant …

Investigating Nekton Response To Changing Salinities In The Mississippi Sound: An Experimental And Statistical Approach, Adam Murray

Master's Theses

The Mississippi Sound provides nursery habitats for many coastal species and is recognized for its commercial fisheries. Previous freshening events linked to the Bonnet Carré Spillway, a Mississippi River flood diversion structure, proved catastrophic for oyster populations in the Mississippi Sound, but effects on mobile fish and shellfish species are not well-defined. The planned Mid-Breton Sediment Diversion (MBSD), an initiative to combat wetland loss, is also forecasted to lower salinities in the region, increasing the need to better understand responses of commercially and ecologically important species to freshening events. The objective of this study was to characterize effects of salinity …

Applying Data-Limited Assessment Methods To Charter Logbook Length Data, Brett Crisafulli, Sybrand Alex Hesp, David Fairclough, Emily A. Fisher, Paul D. Lewis, Jeffrey V. Norriss, Corey B. Wakefield, Fabian Trinnie, Stephen J. Newman

Fisheries Research Reports

Marine waters along the Western Australian coastline are characterised by low ecosystem productivity and high species diversity of fishes. With over 3,000 known species comprising estuarine, nearshore, demersal and pelagic fishes in the region, many contribute to important commercial and recreational fisheries (Lenanton et al. 1991; Molony et al. 2011; Newman et al. 2018). As it is logistically and economically infeasible to conduct intensive monitoring and high-level stock assessments of all exploited fish species in Western Australia, indicator species are used to assess the sustainability of suites of species of biological and ecological similarity, for optimal use of available resources …

A Generalized Machine Learning Model For Long-Term Coral Reef Monitoring In The Red Sea, Justin J. Gapper, Surendra Maharjan, Wenzhao Li, Erik Linstead, Surya Prakash Tiwari, Mohamed A. Qurban, Hesham El-Askary

Mathematics, Physics, and Computer Science Faculty Articles and Research

Coral reefs, despite covering less than 0.2 % of the ocean floor, harbor approximately 35 % of all known marine species, making their conservation critical. However, coral bleaching, exacerbated by climate change and phenomena such as El Niño, poses a significant threat to these ecosystems. This study focuses on the Red Sea, proposing a generalized machine learning approach to detect and monitor changes in coral reef cover over an 18-year period (2000–2018). Using Landsat 7 and 8 data, a Support Vector Machine (SVM) classifier was trained on depth-invariant indices (DII) derived from the Gulf of Aqaba and validated against ground …

A Step By Step Shoreline Attribute Analysis For Selected Waterbodies In The Gulf Of Mexico To Promote The Use Of Living Shorelines, Christoper Boyd, Xutong Niu, Taylor R. Horn

Journal of Extension

Living Shorelines are being promoted by coastal extension professionals as a more resilient nature-based solution to control shoreline erosion. The Virginia Institute of Marine Sciences Living Shorelines Suitability Model was run in selected waterbodies within the Gulf of Mexico.

The locations of the selected water bodies, coastal data sets used, and shoreline protection recommendations generated by the Model are presented. A step-by-step statistical analysis conducted through ArcGIS Pro from these selected coastal shorelines will illustrate how extension professionals with novice GIS experience can use the model output to promote living shorelines to coastal property owners, city managers, and developers.

Development Of A Flow Cytometry Method For The Identification And Enumeration Of Enterococcus Faecalis, Riza Magbitang

Master's Theses

A multi-color flow cytometry method coupled with fluorescent staining was developed to detect and quantify E. faecalis concentrations in coastal waters as an alternative to the traditional membrane filtration method. The developed method was used to characterize E. faecalis during batch growth and yielded consistent results across the various physiological states of the cells. Additionally, the application of propidium iodide (i.e., a viability stain), afforded the method the ability to differentiate between cells with intact and compromised cell membranes, which raises the potential of quantifying cells that are in viable-but-non-culturable (VBNC) state. Initial field test using natural seawater samples spiked …

Rescape: Transforming Coral-Reefscape Images For Quantitative Analysis, Zachary Ferris, Eraldo Ribeiro, Tomofumi Nagata, Robert Van Woesik

Ocean Engineering and Marine Sciences Faculty Publications

Ever since the first image of a coral reef was captured in 1885, people worldwide have been accumulating images of coral reefscapes that document the historic conditions of reefs. However, these innumerable reefscape images suffer from perspective distortion, which reduces the apparent size of distant taxa, rendering the images unusable for quantitative analysis of reef conditions. Here we solve this century-long distortion problem by developing a novel computer-vision algorithm, ReScape, which removes the perspective distortion from reefscape images by transforming them into top-down views, making them usable for quantitative analysis of reef conditions. In doing so, we demonstrate the …

Fauna, Flora, And Land Cover Changes Over The Last Two Decades In The Mobile-Tensaw River Delta, Gabriel De Oliveria, Steven R. Schultze, Guilherme Mataveli

Technical Reports

A technical report documenting ecosystem changes to the Mobile-Tensaw River Delta region due to urban expansion over approximately two decades (2001-2019).

The Relationship Between Biofouling Adhesion And Frequency Of Mechanical Cleaning To Control The Recruitment To Clear Coatings, Dylan Thomas Eggers

Theses and Dissertations

There is a need to control biofouling on sensors and transparent windows in the marine environment. Clear silicone coatings offer a method to reduce the adhesion strength of marine organisms to the surface, however, these also require mechanical cleaning to maintain the surfaces free of fouling. This research evaluated the performance of eighty seven formulations and took the top two candidates to investigate a) the frequencies of wiping required by a brush to maintain two coatings and uncoated glass surfaces free of fouling and b) the effects of clear silicone coatings fouling release properties on required frequencies. The panels were …