Marine Biology Commons^™

Evaluating The Influences Of Karst Hydrogeology On Freshwater Harmful Algal Blooms In Kentucky Lakes, Robert T. Schaefer

Masters Theses & Specialist Projects

A problem exists in Nolin River Lake and Rough River Lake in Kentucky, due to the increasing prevalence of cyanobacterial-based harmful algal blooms (CyanoHABs) and the threats they pose to local communities. These lakes were developed as artificial reservoirs from embankment. Further complicating the issue, the lakes are located within a heavily karstified region and there exists no plan or method currently for monitoring or managing CyanoHABs in a karst region with regard to groundwater inputs to the lake systems or their tributaries. A mixture of techniques and analysis methods was used to determine the best way to monitor and …

Beach Nourishment: Effects On The Hatching & Emergence Success Rates Of Leatherback (Dermochelys Coriacea), Loggerhead (Caretta Caretta), And Green (Chelonia Mydas) Sea Turtles, Jenna Caderas

HCNSO Student Theses and Dissertations

Broward County, Florida is a popular tourism destination. Due to its popularity, much of the shoreline has been modified and natural habitats were replaced with infrastructure such as houses, condominiums, resorts, and restaurants. The same Broward County beaches utilized by tourists and residents are important for three species of nesting sea turtles, including the Leatherback, Dermochelys coriacea, Loggerhead, Caretta caretta, and Green, Chelonia mydas, Turtles. The Broward County Sea Turtle Conservation Program (BCSTCP) collects yearly data in order to study these endangered reptiles. Increased anthropogenic effects including further coastal development (public & private), public beach events, public beach access, as …

Employing Extant Stable Carbon Isotope Data In Gulf Of Mexico Sedimentary Organic Matter For Oil Spill Studies, Brad E. Rosenheim, Matthew A. Pendergraft, George C. Flowers, Robert Carney, José L. Sericano, Jeff Chanton, Zeynep Dincer, Terry L. Wade

Marine Science Faculty Publications

We have compiled and mapped available carbon isotope data from sedimentary organic material sampled from the Gulf of Mexico prior to 2010. These data provide a baseline to which any changes in the Gulf of Mexico after the 2010 Deepwater Horizon oil spill can be compared. The mean (±1σ) δ¹³C values, relative to PDB, are −21.4±1.9‰ (entire Gulf of Mexico), −21.7±1.2‰ (shelf sediments), −20.4±1.6‰ (deepwater sediments), and −25.2±4.1‰ (seep-affected sediments). We compare pre-spill mean δ¹³C values to carbon isotope measurements of sedimentary organic material from coretop samples collected after the 2010 Deepwater Horizon oil …

Changes In Sediment Redox Conditions Following The Bp Dwh Blowout Event, D. W. Hastings, Patrick Schwing, G. R. Brooks, R. A. Larson, J. L. Morford, T. Roeder, K. A. Quinn, T. Bartlett, Isabel C. Romero, David Hollander

Marine Science Faculty Publications

Following the blowout of the Macondo well, a pulse in sedimentation resulted in changes in sedimentary redox conditions. This is demonstrated by downcore and temporal changes in the concentration of redox sensitive metals: Mn, Re, and Cd. Sediment cores collected in the NE Gulf of Mexico (GoM) reveal increased sedimentation after the Deepwater Horizon (DWH) blowout. The formation of mucous-rich marine snow in surface waters and subsequent rapid deposition to underlying sediments is the likely cause. Respiration of this material resulted in decreased pore-water oxygen concentration and a shoaled redoxcline, resulting in two distinct Mn peaks in sediments following …

Seascapes As A New Vernacular For Pelagic Ocean Monitoring, Management And Conservation, Maria T. Kavanaugh, Matthew J. Oliver, Francisco P. Chavez, Ricardo M. Letelier, Frank E. Muller-Karger, Scott C. Doney

Marine Science Faculty Publications

For terrestrial and marine benthic ecologists, landscape ecology provides a framework to address issues of complexity, patchiness, and scale—providing theory and context for ecosystem based management in a changing climate. Marine pelagic ecosystems are likewise changing in response to warming, changing chemistry, and resource exploitation. However, unlike spatial landscapes that migrate slowly with time, pelagic seascapes are embedded in a turbulent, advective ocean. Adaptations from landscape ecology to marine pelagic ecosystem management must consider the nature and scale of biophysical interactions associated with organisms ranging from microbes to whales, a hierarchical organization shaped by physical processes, and our limited capacity …

Comparative Genomics, Transcriptomics, And Physiology Distinguish Symbiotic From Free-Living Chlorella Strains, Cristian F. Quispe, Olivia Sonderman, Maya Khasin, Wayne R. Riekhof, James L. Van Etten, Kenneth Nickerson

Kenneth Nickerson Papers

Most animal–microbe symbiotic interactions must be advantageous to the host and provide nutritional benefits to the endosymbiont. When the host provides nutrients, it can gain the capacity to control the interaction, promote self-growth, and increase its fitness. Chlorella-like green algae engage in symbiotic relationships with certain protozoans, a partnership that significantly impacts the physiology of both organisms. Consequently, it is often challenging to grow axenic Chlorella cultures after isolation from the host because they are nutrient fastidious and often susceptible to virus infection. We hypothesize that the establishment of a symbiotic relationship resulted in natural selection for nutritional and metabolic …

Assessment Of Indoor And Outdoor Pm Species At Schools And Residences In A High-Altitude Ecuadorian Urban Center, Amit U. Raysoni, Rodrigo X. Armijos, M. Margaret Weigel, Teresa Montoya, Patricia Eschanique, Marcia Racines, Wen-Whai Li

School of Earth, Environmental, & Marine Sciences Faculty Publications

An air monitoring campaign to assess children’s environmental exposures in schools and residences, both indoors and outdoors, was conducted in 2010 in three low-income neighborhoods in Z1(north), Z2(central), and Z3(southeast) zones of Quito, Ecuador - a major urban center of 2.2 million inhabitants situated 2850 meters above sea level in a narrow mountainous basin. Z1 zone, located in northern Quito, historically experienced emissions from quarries and moderate traffic. Z2 zone was influenced by heavy traffic in contrast to Z3 zone which experienced low traffic densities. Weekly averages of PM samples were collected at schools (one in each zone) and residences …

Regional Extinction Risk And Conservation Priorities For Persian Gulf Marine Bony Fishes, Jack Ryan Buchanan

Biological Sciences Theses & Dissertations

Around the world, protected areas are the primary conservation measure used to combat biodiversity loss; however, these are often established without comprehensive species-specific information, leading to placement in areas that often do not address the processes that threaten biodiversity. To address this, International Union for Conservation of Nature Red List assessments are being utilized to determine species-specific threats and population status at the global and sub-global levels. This study examines the regional extinction risk for all known marine bony fishes of the Persian Gulf. About 8.3% of the 471 marine bony fishes assessed are at elevated risk of regional extinction. …

Hotspots, Extinction Risk And Conservation Priorities Of Greater Caribbean And Gulf Of Mexico Marine Bony Shorefishes, Christi Linardich

Biological Sciences Theses & Dissertations

Understanding the status of species is important for allocation of resources to redress biodiversity loss. Regional organizations tasked with managing threats to the 1,360 marine bony shorefishes of the Caribbean and Gulf of Mexico would benefit from a delineation of conservation priorities. However, prior to this study, conservation status was known for only one quarter of these shorefishes. Extinction risk assessment under IUCN Red List Criteria is a widely-used, objective method to communicate species-specific conservation needs. Data were collated on each species’ distribution, population, habitats and threats and experts at three Red List workshops assigned a global level extinction risk …

Establishing An Ecological Baseline Of Macroinfaunal Assemblages In Nearshore Sediments Of Southeast Florida, Candace Grimes

HCNSO Student Theses and Dissertations

Changes in the biosphere require ecological baselines in order to compare past, present, and future conditions and identify their effects. Establishing ecological baselines for infauna in southeastern Florida is a key component to understanding effects of current and future disturbances; however, nearshore sediment infaunal communities are neither as thoroughly investigated nor as well understood as, for example, coral reefs, seagrass beds, and mangroves. Baseline studies help assess and monitor changes due, for example, to human population growth, sea level change, and global warming. Therefore, six benthic cores were collected quarterly from six locations from May 2015 to February 2016 using …

Do Some Deep‐Sea, Sediment‐Dwelling Species Of Harpacticoid Copepods Have 1000‐Km‐Scale Range Sizes?, Erin E. Easton, David Thistle

School of Earth, Environmental, & Marine Sciences Faculty Publications

The range sizes of sediment‐dwelling deep‐sea species are largely unknown. Such knowledge is important because a deep sea composed in large part of species with 100‐km‐scale ranges would be very different from one composed predominantly of species with 1000‐km‐scale ranges. For example, the total species richness would be much greater in the first case than in the second. As a step towards the determination of the distribution of species’ range sizes in the deep sea, we asked whether harpacticoid copepods (Crustacea) on the continental rise in the northeastern Pacific had 1000‐km‐scale range sizes. We chose harpacticoids because they occur widely …

Assessing The Effects Of The Mud Snail, Ilyanassa Obsoleta, On The Benthic Microalgal Community In A Pristine Saltmarsh, Miranda Gore

Theses and Dissertations

Saltmarshes are among the most productive ecosystems globally. At North Inlet estuary, South Carolina, about one third of the primary production comes from benthic microalgae. During the tidal cycle, mobile microalgae vertically migrate through the upper 3 mm of sediment. At low tide, algae are vulnerable to a variety of grazers, including the mud snail, Ilyanassa obsoleta, which is abundant in tidal creeks. Many species of intertidal snails have been shown to significantly alter the community structure and density of microalgae within the sediment. The purpose of this study was to determine how I. obsoleta affects the benthic microalgae community …

Extant Crinoidea (Echinodermata) Of Singapore, Charles Messing, Teresa S. Tay

Marine & Environmental Sciences Faculty Articles

The crinoid fauna of Singaporean waters now includes approximately 39 nominal species belonging to six families, all in Order Comatulida. Seventeen of the 22 species collected during the Singapore Strait Biodiversity Workshop (May-June 2013) were previously known from the area. Of the remaining five, Cenometra bella (Colobometridae) is definitely a new record for Singapore, while the taxonomic status of the other four is uncertain. Seventeen additional species, collected almost entirely in the nineteenth and early twentieth centuries, were not represented in the 2013 survey.

Associations Of Metal Exposure In Otoliths With Lesion Formation In Offshore, Northeastern Gulf Of Mexico Fishes Collected After The Deepwater Horizon Oil Spill (2011-2013), Ernst B. Peebles

C-IMAGE data

This dataset contains annual metal concentrations for the years 2009-2011 within the otoliths of six, offshore Gulf of Mexico fishes: Red Grouper, Epinephelus morio; Red Porgy, Pagrus pagrus; Red Snapper, Lutjanus campechanus; Southern Hake, Urophycis floridana; Tilefish, Lopholatilus chamaeleonticeps; and Yellowedge Grouper, Hyporthodus flavolimbatus. Fish were collected from the northeastern Gulf of Mexico, from approximately the Louisiana Shelf to the West Florida Shelf. For each sample, a suite of 9 isotopes was measured within fish otoliths: 24Mg, 51V, 53Cr, 57Fe, 59Co, 60Ni, 63Cu, 64Zn, and 208Pb. Annual metal concentrations were determined by averaging metal concentrations corresponding to the annual increment …

Local Versus Generalized Phenotypes In Two Sympatric Aurelia Species: Understanding Jellyfish Ecology Using Genetics And Morphometrics, Luciano M. Chiaverano, Keith Bayha, William M. Graham

Faculty Publications

For individuals living in environmentally heterogeneous environments, a key component for adaptation and persistence is the extent of phenotypic differentiation in response to local environmental conditions. In order to determine the extent of environmentally induced morphological variation in a natural population distributed along environmental gradients, it is necessary to account for potential genetic differences contributing to morphological differentiation. In this study, we set out to quantify geographic morphological variation in the moon jellyfish Aurelia exposed at the extremes of a latitudinal environmental gradient in the Gulf of Mexico (GoM). We used morphological data based on 28 characters, and genetic data …

Diversity, Structure And Convergent Evolution Of The Global Sponge Microbiome, Torsten Thomas, Lucas Moitinho-Silva, Miguel Lurgi, Johannes R. Bjork, Cole Easson, Carmen Astudillo-Garcia, Julie B. Olson, Patrick M. Erwin, Susanna Lopez-Legentil, Heidi Luter, Andia Chaves Fonnegra, Rodrigo Costa, Peter J. Schupp, Laura Steindler, Dirk Erpenbeck, Jack Gilbert, Rob Knight, Gail Ackermann, Jose V. Lopez, Michael W. Taylor, Robert W. Thacker, Jose M. Montoya, Ute Hentschel, Nicole S. Webster

Marine & Environmental Sciences Faculty Articles

Sponges (phylum Porifera) are early-diverging metazoa renowned for establishing complex microbial symbioses. Here we present a global Porifera microbiome survey, set out to establish the ecological and evolutionary drivers of these host–microbe interactions.We show that sponges are a reservoir of exceptional microbial diversity and major contributors to the total microbial diversity of the world’s oceans. Little commonality in species composition or structure is evident across the phylum, although symbiont communities are characterized by specialists and generalists rather than opportunists. Core sponge microbiomes are stable and characterized by generalist symbionts exhibiting amensal and/or commensal interactions. Symbionts that are phylogenetically unique to …

Population Dynamics And Community Composition Of Ammonia Oxidizers In Salt Marshes After The Deepwater Horizon Oil Spill, Anne E. Bernhard, Roberta Sheffer, Anne E. Giblin, John M. Marton, Brian J. Roberts

Biology Faculty Publications

The recent oil spill in the Gulf of Mexico had significant effects on microbial communities in the Gulf, but impacts on nitrifying communities in adjacent salt marshes have not been investigated. We studied persistent effects of oil on ammonia-oxidizing archaeal (AOA) and bacterial (AOB) communities and their relationship to nitrification rates and soil properties in Louisiana marshes impacted by the Deepwater Horizon oil spill. Soils were collected at oiled and unoiled sites from Louisiana coastal marshes in July 2012, 2 years after the spill, and analyzed for community differences based on ammonia monooxygenase genes (amoA). Terminal Restriction Fragment …

A Compilation Of Global Bio-Optical In Situ Data For Ocean-Colour Satellite Applications, Frank Muller-Karger

Marine Science Faculty Publications

A compiled set of in situ data is important to evaluate the quality of ocean-colour satellite-data records. Here we describe the data compiled for the validation of the ocean-colour products from the ESA Ocean Colour Climate Change Initiative (OC-CCI). The data were acquired from several sources (MOBY, BOUSSOLE, AERONET-OC, SeaBASS, NOMAD, MERMAID, AMT, ICES, HOT, GeP&CO), span between 1997 and 2012, and have a global distribution. Observations of the following variables were compiled: spectral remote-sensing reflectances, concentrations of chlorophyll a, spectral inherent optical properties and spectral diffuse attenuation coefficients. The data were from multi-project archives acquired via the open …

Predator-Prey Diet Linkages With Error Range For The Gulf Of Mexico Fitted Using Maximum Likelihood Method, April 2013- May 2015, Cameron Ainsworth

C-IMAGE data

Data is from Tarnecki, J.H., Wallace, A., Simons, J. and Ainsworth, C.H. 2016. Progression of a Gulf of Mexico Food Web Supporting Atlantis Ecosystem Model Development. Fisheries Research (doi:10.1016/j.fishres.2016.02.023). This is a dataset representing predator-prey linkages with associated error ranges for Gulf of Mexico fish functional groups. The data will be used in an Atlantis biogeochemical trophic ecosystem model of the Gulf of Mexico described by Ainsworth et al. 2015 (NOAA Technical Memorandum NMFS-SEFSC-676). This diet dataset is based on data previously published in Masi, M.D., Ainsworth, C.H., Chagaris, D., 2014. (Ecol. Model. 284, 60-74) and expanded to include new …

Life In The Cold: An Investigation Of Polar Regions, Briar Bragdon, Ashley Breault, Bailey Bush, Jennifer Gamble, Rebecca Hudak, Emily Johnston, Kaitlyn Kennedy, Alexandria Makucewicz, Sharlene Maynard, Erin Mohr, Gwen Pelletier, Halie Pruitt, Abigail Rhodes, Peter Swan, Markus Frederich

Marine Sciences Student Projects

Polar areas provide unique environments that, though they may seem extreme and uninhabitable, are flourishing with life. These areas around the North and South poles include deep oceans, shallow shelf regions, tundra, mountain ranges and vast glaciers. With the increasing effects of global climate change, a basic knowledge of polar regions is crucial to understand future impacts and implications. The purpose of this book is to give a broad background of polar biology, and also provide details on specific examples through case studies. Topics included throughout this book are: Ice, Life in Polar Regions, Species Interactions, and Anthropogenic Impacts.

The …

Rearing Temperature Affects The Expression Of Proteins In The Adhesive Of The Striped Acorn Barnacle, Balanus Amphitrite, Melissa J. Daugherty

Master's Theses

Barnacles are dominant hard–fouling organisms in marine waters. They attach to substrates by secreting a complex proteinaceous adhesive. Understanding the chemical composition of this multi–protein underwater adhesive and how it is affected by environmental variables, such as oceanic temperatures, is critical for developing nontoxic solutions to control biofouling. Previous experiments in our lab revealed an inverse relationship between critical removal stress (CRS) and temperatures at which barnacles were reared. Further investigations showed that this correlation is not attributed to differences in physical properties such as barnacle size or short–term changes in the viscosity of adhesive. Therefore, the observed effects may …

The Hagfish Gland Thread Cell: A Fiber-Producing Cell Involved In Predator Defense, Douglas S. Fudge, Sarah Schorno

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Fibers are ubiquitous in biology, and include tensile materials produced by specialized glands (such as silks), extracellular fibrils that reinforce exoskeletons and connective tissues (such as chitin and collagen), as well as intracellular filaments that make up the metazoan cytoskeleton (such as F-actin, microtubules, and intermediate filaments). Hagfish gland thread cells are unique in that they produce a high aspect ratio fiber from cytoskeletal building blocks within the confines of their cytoplasm. These threads are elaborately coiled into structures that readily unravel when they are ejected into seawater from the slime glands. In this review we summarize what is currently …

Surface Dynamics Of Crude And Weathered Oil In The Presence Of Dispersants: Laboratory Experiment And Numerical Simulation, Alexander Soloviev, Brian K. Haus, Michael G. Mcgauley, Cayla Whitney Dean, David G. Ortiz-Suslow, Nathan J. M. Laxague, Tamay M. Ozgokmen

Marine & Environmental Sciences Faculty Articles

Marine oil spills can have dire consequences for the environment. Research on their dynamics is important for the well-being of coastal communities and their economies. Propagation of oil spills is a very complex physical-chemical process. As seen during the Deepwater Horizon event in the Gulf of Mexico during 2010, one of the critical problems remaining for prediction of oil transport and dispersion in the marine environment is the small-scale structure and dynamics of surface oil spills. The laboratory experiments conducted in this work were focused on understanding the differences between the dynamics of crude and weathered oil spills and the …

Abundance And Diversity Of Deep-Sea Crustaceans Of Bear Seamount, New England Seamount Chain, Valerie Miranda

HCAS Graduate Science Research Symposium

Bear Seamount (39° 55’ N; 67° 30’ W) is the westernmost peak of extinct undersea volcanoes in the New England Seamount Chain (Moore et al., 2003). It is located on the continental slope off Georges Bank, and is governed by unique environmental factors and currents that may be unlike those of the other seamounts (Moore et al., 2003). Previous cruises to this seamount have been successful in capturing abundant fishes, cephalopods and invertebrates (Moore et al., 2003; Moore et al., 2004; Moore et al., 2008), but only the distribution patterns of the fishes and cephalopods have been examined, leaving a …

Vision And Bioluminescence In Deep-Sea Crustaceans, Tamara Frank

HCAS Graduate Science Research Symposium

Adaptations of the visual systems of deep-sea crustaceans to dim light environments are driven not only by environmental light, but also biologically produced light, or bioluminescence. In the pelagic zone, the relationship is driven, at least in part, by intrinsic bioluminescence. The unusual possession of UV sensitivity, in additional to the expected blue sensitivity, in several species of deep-sea crustaceans appears to be linked to their two modes of bioluminescence. In the benthic zone, the relationship is not so clear. On several NOAA-OER funded research expeditions, electrophysiological studies were conducted on a number of species of decapod crustaceans collected with …

Characterization Of The Marine Sponge Amphimedon Compressa Microbiome Across A Spatial Gradient, Renee Michelle Potens

HCNSO Student Theses and Dissertations

Diverse and ecologically important microbial communities (microbiomes) are symbiotic within marine sponges. In this study, the microbiome of Amphimedon compressa from three sample locations (Broward and Dade Counties, Southeast Florida, USA and the Southern Caribbean, Bocas del Toro, Panama) is characterized using 16S rRNA Illumina sequencing. The predominant taxa are Proteobacteria and Cyanobacteria, as expected for Low Microbial Abundance sponges, accounting for over 53% of the total microbiome community. The numbers of Operational Taxonomic Units (OTUs) decrease from Broward County (2,900) to Dade County (2,300) and then Bocas del Toro (1,200). The correlates to a decreasing north-south gradient of …

Temporal And Spatial Patterns Of Barnacle Settlement Within The Southern, Ca Rocky Intertidal, Diana Fontaine

Undergraduate Honors Theses

Barnacles act as model species for understanding how larval transport processes influence settlement and adult population dynamics. Settlement of barnacle larvae was quantified in the Southern California intertidal from April 2014 through January 2015 and from April through December 2015. Settlement plates (PVC, ~1.9 cm²) were deployed daily at 12-14 locations within our study site in the Bird Rock, La Jolla, California intertidal. Time series of temperature and significant wave height was also collected within the study site. We compared temporal patterns in settlement with changes in temperature and significant wave height. In general, settlement was higher in …

Monitoring A Problem: Evaluating The Ecological Status Of The Invasive Nile Monitor In Florida And Forecasting Population Expansion Using Computational Gis, Noah Cohen

HCAS Graduate Science Research Symposium

The state of Florida is an epicenter for the introduction of exotic terrestrial and marine species, often which are attributed to the pet industry. Identifying the threats posed by exotics that may become invasive is critical to manage and protect indigenous species and habitats. One such exotic that is now invasive in Florida is the Nile Monitor (Varanus niloticus). The Nile monitor is a large, predatory lizard native to central and southern Africa that is thought to have been introduced to Florida via both intentional and unintentional releases associated with the exotic pet trade. Since their introduction, Nile monitors have …

Genomic Assembly Analyses Of Asian Teleost Species Seabass (Lates Calcarifer) And Arowana (Scleropages Formosus), Stephen O'Brien

HCAS Graduate Science Research Symposium

The genome assembly and annotation of Asian seabass (Lates calcarifer) , a marine teleost with aquaculture relevance will be described, an initiative of Genome 10K . Though > 500 eukaryotic genome sequences are available in public repositories, the majority are highly fragmented with incomplete assemblies, so considerable effort and resources are often spent to improve their quality. In the present study, PacBio long read sequencing , genetic and optical mapping, and syntenic inference were combined to build a chromosome-length assembly with a contig N50 size over 1 Mb and scaffold N50 size over 25 Mb that span ~90% of the genome …

If You Build It, Will They Come? Exploring Enhancements To Artificial Structure For Use In Restoration And Mitigation Applications In The Mexican Caribbean, Kirk Kilfoyle

HCAS Graduate Science Research Symposium

A study involving standardized artificial reef modules (ReefballsTM) was conducted in Puerto Morelos, Mexico. The purpose was to explore the use of artificial structure in restoration and mitigation projects in a Caribbean coral reef environment similar to South Florida by applying select experimental treatments hypothesized to accelerate their acquisition of a natural coral reef assemblage. Multiple hypotheses on the progression and interaction between artificial structure and the resulting fish, coral, algal, and non-coral invertebrate assemblages were examined. Each of 40 reefball modules received one of 4 treatments (10 modules/treatment): invertebrate substrate pads, coral transplants, settlement plates, or control. Following deployment, …