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Articles 1021 - 1050 of 2113

Full-Text Articles in Evolution

Mrub_2120, Mrub_2121, Mrub_2122, Mrub_2123 And Mrub_2124 Are Orthologs Of E. Coli Genes B3458, B3457, B3456, B3455 And B3454, Respectively, And Make Up An Operon That Codes For The Branched-Chain Amino Acid Abc Transporter In Meiothermus Ruber Dsm 1279, Aaron Jones, Madelyn Huber, Dr. Lori Scott Jan 2018

Mrub_2120, Mrub_2121, Mrub_2122, Mrub_2123 And Mrub_2124 Are Orthologs Of E. Coli Genes B3458, B3457, B3456, B3455 And B3454, Respectively, And Make Up An Operon That Codes For The Branched-Chain Amino Acid Abc Transporter In Meiothermus Ruber Dsm 1279, Aaron Jones, Madelyn Huber, Dr. Lori Scott

Meiothermus ruber Genome Analysis Project

In this project we investigated the biological function of the genes Mrub_2120, Mrub_2121, Mrub_2122, Mrub_2123 and Mrub_2124 (KEGG map number 02010). We predict these genes encode components of a branched-chain amino acid ATP Binding Cassette (ABC) transporter: 1) Mrub_2120 (DNA coordinates 2169247-2170416 on the reverse strand) encodes the branched-chain amino acid binding protein that is localized to the periplasm; 2) Mrub_2121 (DNA coordinates 2170433..2171353 on the reverse strand) encodes the first TMD; 3) Mrub_2122 (DNA coordinates 2171365..2172279 on the reverse strand) encodes the second TMD; 4) Mrub_2123 (DNA coordinates 2172276..2173028 on the reverse strand) encodes the first NBD; 5) Mrub_2124 …

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Mrub_1675, Mrub_1676, Mrub_1677, And Mrub_1679 Genes Are Orthologs Of B_3458, B_3457, B_3456, And B_3454 Genes In E. Coli, Respectively, Coding For Abc Transporters. Mrub_1678 And B_3455, Though Perform Similar Tasks, Are Not Orthologous, Ravi Patel, Alaina Hofmann, Dr. Lori Scott Jan 2018

Mrub_1675, Mrub_1676, Mrub_1677, And Mrub_1679 Genes Are Orthologs Of B_3458, B_3457, B_3456, And B_3454 Genes In E. Coli, Respectively, Coding For Abc Transporters. Mrub_1678 And B_3455, Though Perform Similar Tasks, Are Not Orthologous, Ravi Patel, Alaina Hofmann, Dr. Lori Scott

Meiothermus ruber Genome Analysis Project

In this project we investigated the biological function of the genes Mrub_1675, Mrub_1676, Mrub_1677, and Mrub_1679 (KEGG map number 02010). We predict these genes encode components of a Branched chain amino acid (ABC) transporter: Mrub_1675 (DNA coordinates 1711022..1712185 on the reverse strand) encodes the permease component, Mrub_1676 (DNA coordinates 1712313..1713170) encodes for the NBD (aka nucleotide binding domain), Mrub_1677 (DNA coordinates 1713167..1714075 on the reverse strand) encodes the NBD (aka nucleotide binding domain), Mrub_1678 (DNA coordinates 1713167..1714075 on the reverse strand) encodes the TMD (aka transmembrane domain) and Mrub_1679 (DNA coordinates 1714781..1715485 on the reverse strand) encodes …

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Mrub_0680, Mrub_0836, And Mrub_0837 Found To Be Orthologous To E. Coli Ccma, Ccmb, And Ccmc, Respectively, Coding For Abc-Transport Proteins Involved In Cytochrome-C Biogenesis, Sarah N. Church, Dr. Lori Scott Jan 2018

Mrub_0680, Mrub_0836, And Mrub_0837 Found To Be Orthologous To E. Coli Ccma, Ccmb, And Ccmc, Respectively, Coding For Abc-Transport Proteins Involved In Cytochrome-C Biogenesis, Sarah N. Church, Dr. Lori Scott

Meiothermus ruber Genome Analysis Project

In this project we investigated the biological function of the genes Mrub_0680, Mrub_0836 and Mrub_0837(KEGG map number 02010). We predict these genes encode components of a Heme ATP Binding Cassette (ABC) transporter: 1) Mrub_0836 (DNA coordinates 823734..824399on the reverse strand) encodes the permease component (aka transmembrane domain), predicted to be an ortho; and 2) Mrub_0680(DNA coordinates 659484..660071 on the reverse strand) encodes the ATP-binding domain (aka nucleotide binding domain); and 3) Mrub_0837(DNA coordinates 824570..825262on the reverse strand) encodes the solute binding protein. This gene system encodes a transmembrane exporter and helper proteins which are thought to …

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Meiothermus Ruber Mrub_0320 Gene Is An Ortholog Of The B3452 Gene, Mrub_0321 Gene Is An Ortholog Of The B3451 Gene, Mrub_0322 Gene Is An Ortholog Of The B3453 Gene, Mrub_2366 Gene Is An Ortholog Of The B3450 Gene Found In Escherichia Coli, Which Encode For Components Of An Abc Transporter Involved In Sn-Glycerol - 3-Phosphate, Jenna Hall, Dr. Lori Scott Jan 2018

Meiothermus Ruber Mrub_0320 Gene Is An Ortholog Of The B3452 Gene, Mrub_0321 Gene Is An Ortholog Of The B3451 Gene, Mrub_0322 Gene Is An Ortholog Of The B3453 Gene, Mrub_2366 Gene Is An Ortholog Of The B3450 Gene Found In Escherichia Coli, Which Encode For Components Of An Abc Transporter Involved In Sn-Glycerol - 3-Phosphate, Jenna Hall, Dr. Lori Scott

Meiothermus ruber Genome Analysis Project

In this project we investigated the biological function of the genes mrub_0320, mrub_0321, mrub_0322, and mrub_2366 (KEGG map number 02010). We predict these genes encode components of a sn-glycerol-3-phosphate (ABC) transporter: 1) mrub_0320 (DNA coordinates 288469..289401) encodes the permease component (aka transmembrane domain), predicted to be an ortholog; 2) mrub_0321 (DNA coordinates 289394..290218) encodes another permease domain, and also contains a transcriptional regular; ATP-binding domain (aka nucleotide binding domain); 3) mrub_0322 (DNA coordinates 290234..291541) encodes the solute binding protein; and 4) mrub_2366 (DNA coordinates 2418207..2419352 on the reverse strand) encodes for an ATP-binding domain for multiple sugar-related ABC transport systems …

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Chickens Play To The Crowd, Cinzia Chiandetti Jan 2018

Chickens Play To The Crowd, Cinzia Chiandetti

Animal Sentience

The time was ripe for Marino’s review of chickens’ cognitive capacities. The research community, apart from expressing gratitude for Marino’s work, should now use it to increase public awareness of chickens’ abilities. People’s views on many animals are ill-informed. Scientists need to communicate and engage with the public about the relevance and societal implications of their findings.

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Post-Darwin Skepticism And Run-Of-The-Mill Suicide, John Hadley Jan 2018

Post-Darwin Skepticism And Run-Of-The-Mill Suicide, John Hadley

Animal Sentience

Peña-Guzmán’s depiction of the opponent of animal suicide as a conservative is a straw man. It is possible to accept that animals are self-conscious and reflexive yet still reject the view that they have the mental wherewithal to commit run-of-the-mill suicide. That animal behaviour can be positioned on a continuum of self-destructive behaviour does not establish that animals can intentionally kill themselves.

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An Adaptationist Perspective On Animal Suicide, Timothy P. Racine Jan 2018

An Adaptationist Perspective On Animal Suicide, Timothy P. Racine

Animal Sentience

Peña-Guzmán’s discussion of suicide in nonhuman animals has broad implications. In this commentary, I focus on the logical relation between suicide and intention. Proximate cause must be distinguished from ultimate function in explanations of suicide. I briefly discuss two adaptationist accounts of suicidal behavior.

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Lessons From Chimpanzee Sign Language Studies, Mary Lee Jensvold Jan 2018

Lessons From Chimpanzee Sign Language Studies, Mary Lee Jensvold

Animal Sentience

Claims are often made about behaviors being unique to humans; the evidence usually shows they are not. Sign language studies on chimpanzees may provide a useful model for comparative studies of suicide. A productive approach to comparative studies is to focus on observable behaviors rather than getting lost in the pitfalls of vague definitions and changing measures.

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Animal Suicide: An Account Worth Giving?, Irina Mikhalevich Jan 2018

Animal Suicide: An Account Worth Giving?, Irina Mikhalevich

Animal Sentience

Peña-Guzmán (2017) argues that empirical evidence and evolutionary theory compel us to treat the phenomenon of suicide as continuous in the animal kingdom. He defends a “continuist” account in which suicide is a multiply-realizable phenomenon characterized by self-injurious and self-annihilative behaviors. This view is problematic for several reasons. First, it appears to mischaracterize the Darwinian view that mind is continuous in nature. Second, by focusing only on surface-level features of behavior, it groups causally and etiologically disparate phenomena under a single conceptual umbrella, thereby reducing the account’s explanatory power. Third, it obscures existing analyses of suicide in biomedical ethics and …

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Can Nondolphins Commit Suicide?, David M. Peña-Guzmán Jan 2018

Can Nondolphins Commit Suicide?, David M. Peña-Guzmán

Animal Sentience

This Response addresses the scientific and philosophical criticisms of my 2017 target article “Can nonhuman animals commit suicide?” It defends my key claims and explores topics (such as animal judgment, animal theory of mind, and the evolution of suicide) that did not appear in the original article. It also points out areas in which further research is needed and concludes that we should be wary of accusations of “anthropomorphism” in debates about animal suicide.

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Dna Extraction And Microsatellite Amplification Of Daphnia Pulicaria Resting Eggs: Analysis Of Allele Frequencies Through Time, Anna Ries Jan 2018

Dna Extraction And Microsatellite Amplification Of Daphnia Pulicaria Resting Eggs: Analysis Of Allele Frequencies Through Time, Anna Ries

Departmental Honors Projects

A paleoecological approach allows for the study of genetic change in populations over longer periods of time than would be possible if one were sampling populations from year to year. Daphnia and other cladoceran zooplankton are amenable to this type of study because they produce diapausing embryos (ephippial eggs) when they sexually reproduce, and these resting eggs can remain viable for decades to centuries in lake sediments. This study uses paleoecological methods as well as a new methodology for ephippial DNA extraction and amplification to assay for genetic variation in ephippial eggs obtained from sediments of varying ages from Square …

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Animal Suicide: Evolutionary Continuity Or Anthropomorphism?, Antonio Preti Jan 2018

Animal Suicide: Evolutionary Continuity Or Anthropomorphism?, Antonio Preti

Animal Sentience

Evolutionary processes are characterized by both continuity and discontinuity. Evidence on suicide in nonhuman animals is faint and often rests on the metaphorical or anthropomorphic use of the term. Suicidal behavior might be an evolutionary jump relatively recent in our species: a byproduct of living in groups of people who are not as closely related genetically as in social groups of nonhuman mammals.

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Roots Of Self-Preservation Failure In Animal Behavior, Denys Decatanzaro Jan 2018

Roots Of Self-Preservation Failure In Animal Behavior, Denys Decatanzaro

Animal Sentience

Affective variation from euphoria to dysphoria, best understood in humans, is also found in the behavior and neurochemistry of many other mammals. Suicide in humans typically occurs in highly dysphoric and despondent individuals. Self-injurious behavior has been observed in dysphoric and despondent nonhuman primates. In humans, suicide is facilitated by a highly-evolved neocortex giving rise to behavioral flexibility and culture. As Peña-Guzmán indicates, some other mammals also have elaborate neocortices and the capacity for cognitive insight, particularly apes, delphinids, and whales. Suicide is most likely to occur in species where individuals live in stable groups of highly interdependent kin.

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Animal Suicide And "Anthropodenial", Ryan Hediger Jan 2018

Animal Suicide And "Anthropodenial", Ryan Hediger

Animal Sentience

Increasing understanding of the impressive cognitive and social capacities of nonhuman animals suggests the possibility that they may sometimes commit suicide. Such notions tend to be dismissed as “anthropomorphism.” That interpretive hazard, I argue, must be weighed against the opposite hazard of “anthropodenial” — “the a priori rejection of shared characteristics between humans and animals” (de Waal 2006). If animals do commit suicide, how often is it motivated precisely by the impact of humans on animal life?

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Continuum And Temporality, Gerard Kuperus Jan 2018

Continuum And Temporality, Gerard Kuperus

Animal Sentience

I fully support the continuum proposed in the target article and argue along the same lines that we should be suspicious of drawing any strict borders between human and non-human animals. Since we can say very little with absolute certainty about human intentions regarding suicide, we have no certainty about the intentions of non-human animals. Although I am very sympathetic to Peña-Guzmán’s overall argument, I suggest that time could be taken into consideration as well.

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Thinking About Thinking Chickens, Lori Marino Jan 2018

Thinking About Thinking Chickens, Lori Marino

Animal Sentience

This response focuses on three major conceptual threads that run through the peer commentary on my target article: (1) how the use of chickens influences our views of them, (2) whether education is effective, and (3) what components of chicken psychology are most relevant to understanding who chickens are.


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The Life History Of Faxonius Rusticus (Girard, 1852) In Sunfish Creek, Monroe County, Ohio, Kyle Mcgill Jan 2018

The Life History Of Faxonius Rusticus (Girard, 1852) In Sunfish Creek, Monroe County, Ohio, Kyle Mcgill

Theses, Dissertations and Capstones

Crayfish are among the most imperiled faunal groups globally. The continued spread of invasive species is a major impact to crayfish. Invasive species, much like the native species, are often understudied. As declines continue, invasive species spread, and new species are discovered; additional life history studies are as important as ever for crayfish conservation. Life history data was collected for rusty crayfish (Faxonius rusticus) from October 2017 to September 2018 in Sunfish Creek, Monroe County, Ohio. Faxonius rusticus are native to the Ohio River drainage around Cincinnati, Ohio but have extensively expanded their range over the past 30 years. Sunfish …

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Multiple Signaling Functions Of Song In A Polymorphic Species With Alternative Reproductive Strategies, M. L. Grunst, A. S. Grunst, Vincent A. Formica, R. A. Gonser, E. M. Tuttle Jan 2018

Multiple Signaling Functions Of Song In A Polymorphic Species With Alternative Reproductive Strategies, M. L. Grunst, A. S. Grunst, Vincent A. Formica, R. A. Gonser, E. M. Tuttle

Biology Faculty Works

Vocal traits can be sexually selected to reflect male quality, but may also evolve to serve additional signaling functions. We used a long-term dataset to examine the signaling potential of song in dimorphic white-throated sparrows (Zonotrichia albicollis). We investigated whether song conveys multifaceted information about the vocalizing individual, including fitness, species identity, individual identity, and morph. We also evaluated whether song traits correlate differently with fitness in the two morphs, as the more promiscuous strategy of white, relative to tan, morph males might impose stronger sexual selection. Males with high song rates achieved higher lifetime reproductive success, and this pattern …

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Social Contact Patterns Can Buffer Costs Of Forgetting In The Evolution Of Cooperation, Jeffrey R. Stevens, Jan K. Woike, Lael J. Schooler, Stefan Lindner, Thorsten Pachur Jan 2018

Social Contact Patterns Can Buffer Costs Of Forgetting In The Evolution Of Cooperation, Jeffrey R. Stevens, Jan K. Woike, Lael J. Schooler, Stefan Lindner, Thorsten Pachur

Jeffrey Stevens Publications

Analyses of the evolution of cooperation often rely on two simplifying assumptions: (i) individuals interact equally frequently with all social network members and (ii) they accurately remember each partner's past cooperation or defection. Here, we examine how more realistic, skewed patterns of contact—in which individuals interact primarily with only a subset of their network's members—influence cooperation. In addition, we test whether skewed contact patterns can counteract the decrease in cooperation caused by memory errors (i.e. forgetting). Finally, we compare two types of memory error that vary in whether forgotten interactions are replaced with random actions or with actions from previous …

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Mesotocin Influences Pinyon Jay Prosociality, Juan Duque, Whitney Leichner, Holly Ahmann, Jeffrey R. Stevens Jan 2018

Mesotocin Influences Pinyon Jay Prosociality, Juan Duque, Whitney Leichner, Holly Ahmann, Jeffrey R. Stevens

Jeffrey Stevens Publications

Many species exhibit prosocial behavior, in which one individual’s actions benefit another individual, often without an immediate benefit to itself. The neuropeptide oxytocin is an important hormonal mechanism influencing prosociality in mammals, but it is unclear whether the avian homologue mesotocin plays a similar functional role in birds. Here, we experimentally tested prosociality in pinyon jays (Gymnorhinus cyanocephalus), a highly social corvid species that spontaneously shares food with others. First, we measured prosocial preferences in a prosocial choice task with two different payoff distributions: Prosocial trials delivered food to both the subject and either an empty cage or a partner …

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If Nonhuman Animals Can Suicide, Why Don’T They?, C. A. Soper, Todd K. Shackelford Jan 2018

If Nonhuman Animals Can Suicide, Why Don’T They?, C. A. Soper, Todd K. Shackelford

Animal Sentience

An evolutionary analysis suggests that selection is unlikely to have tolerated the capacity for intentional self-killing in nonhuman animals. The potential to escape pain by suicide would have presented a recurrent and severe adaptive problem for an animal with a reproductive future to protect. If the potential for suicide arose in the evolutionary past, anti-suicide mechanisms may have co-evolved, as we believe they have in adult humans. Peña-Guzmán’s (2017) argument that some nonhuman animals can suicide is incomplete without an account of the defences that result in the vast majority opting not to.

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Dogs Aren’T Jealous – They Are Just Asking For Accurate Information, Karen L. Overall Jan 2018

Dogs Aren’T Jealous – They Are Just Asking For Accurate Information, Karen L. Overall

Animal Sentience

Awake fMRI offers us a unique opportunity to view and understand how dogs see the world and use the information in it. Given the limitations of behavioral assays and the small sample sizes inherent in these studies, labeling of patterns of canine behaviors using pop psychology terms may actually interfere with our understanding of canine brains and obscure for us a more parsimonious but exciting interpretation of canine behavior. We should use this window into how dogs think wisely.


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Chicken Minds And Moral Standing, Kristin Andrews Jan 2018

Chicken Minds And Moral Standing, Kristin Andrews

Animal Sentience

Some of the cognitive traits that Marino reviews are not in themselves relevant to ethics, either for chickens or human infants, but affective traits are, among them desires.

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Lessons From Behaviour For Brain Imaging, Carolyn J. Walsh Jan 2018

Lessons From Behaviour For Brain Imaging, Carolyn J. Walsh

Animal Sentience

Integrating physiological and behavioural arousal with social context is fundamental to understanding affect in dogs. Cook et al. (2018) have made a worthy start towards illuminating the neural basis of dog affect underlying resource loss. However, their study depends on retrospective behaviour reports versus direct testing, and an interpretation of differential neural activation that is based on too few dogs. Research groups conducting canine brain-imaging work might: (1) consider collaborative approaches to augment sample sizes and replicability, and (2) take a recent lesson from dog behavioural research regarding a more cautious approach to applying functional labels to physiological and/or behavioural …

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The Degeneracy Of Behavior And The Rise Of Neuroimaging To Measure Affective States In Dogs, Peter F. Cook, Gregory S. Berns Jan 2018

The Degeneracy Of Behavior And The Rise Of Neuroimaging To Measure Affective States In Dogs, Peter F. Cook, Gregory S. Berns

Animal Sentience

It is gratifying and significant that so many scientists from diverse fields are arguing in-depth regarding a particularly complex set of social emotions in a non-human animal. Emotions play a fundamental role in decision making and information processing. Neuroimaging is important in understanding the cognitive and emotional worlds of non-human animals and can help measure covert emotions lacking clear behavioral correlates. Various experimental approaches could clarify the relative importance of attachment and aggression in jealousy and whether the phenomenon we measured is more akin to human envy or jealousy. Reverse inference from amygdala activation is probably justified because behavior is …

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An Investigation Of Implicit And Explicit Memory In The Survival Memory Paradigm, Allison M. Wilck Jan 2018

An Investigation Of Implicit And Explicit Memory In The Survival Memory Paradigm, Allison M. Wilck

Legacy Theses & Dissertations (2009 - 2024)

Robust support has been found for a survival processing effect on memory when information is encoded for its fitness-relevance (Nairne, Thompson, & Pandeirada, 2007). However, support for this effect has been limited to forms of memory that require intentional, explicit retrieval processes. Thus far, the literature has failed to identify the effect in implicit, automatic memory using conceptual and perceptual production tasks (McBride, Thomas, & Zimmerman, 2013; Tse & Altarriba, 2010). In the current study, an alternative implicit memory test that employs different memory processes was employed in a further attempt to examine the survival processing effect in implicit memory. …

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Caterpillar/Basil-Plant Tandems, Paco Calvo Jan 2018

Caterpillar/Basil-Plant Tandems, Paco Calvo

Animal Sentience

According to Reber (2016), subjectivity springs from primitive life itself. Granting his non-neurocentric stance, I shall try to show that his framework falls prey to zoocentric preconceptions that divest certain non-animal life-forms of mentality. There is no reason to exclude the possibility that plants have evolved different structures that underlie their own subjective experiences, all according to Reber’s model. It is the degree of phenotypic flexibility and integration that we observe in the behavioral repertoire of plants that may end up supporting their capacity for subjective experience. This remains an open empirical question.

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Evolution Of Floral Morphology And Symmetry In The Miconieae (Melastomataceae), Maria Gavrutenko Jan 2018

Evolution Of Floral Morphology And Symmetry In The Miconieae (Melastomataceae), Maria Gavrutenko

Dissertations and Theses

Analyses of evolution of floral morphology and symmetry broaden our understanding of the drivers of angiosperm diversification. Integrated within a flower, labile floral characters produce different phenotypes that promote variable interactions with pollinators. Thus, investigation of floral evolution may help infer potential historic transitions in pollinator modes and ecological pressures that generated present diversity. This study aims to explore morphological evolution of flowers in Miconieae, a species-rich Neotropical tribe within family Melastomataceae. Despite a constrained floral plan, Melastomataceae manage to achieve a variety of floral traits appealing to diverse pollinator types, with majority of the species requiring specialized “buzz pollination” …

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Finding The Green-Eyed Monster In The Brain Of A Dog, Peter Singer Jan 2018

Finding The Green-Eyed Monster In The Brain Of A Dog, Peter Singer

Animal Sentience

That dogs show behavior suggestive of jealousy has long been known and has been demonstrated under controlled conditions. Cook et al. have now shown arousal in the amygdala when dogs see a caregiver feeding another dog. This finding has ethical significance in two respects. First, the consideration shown by the investigators for the welfare of their experimental subjects sets an example for other researchers using animals. Second, the greater understanding of the emotional lives of animals should lead to more concern for their needs.

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What Can The Social Emotions Of Dogs Teach Us About Human Emotions?, Dean Mobbs Jan 2018

What Can The Social Emotions Of Dogs Teach Us About Human Emotions?, Dean Mobbs

Animal Sentience

It has long been believed that social emotions such as guilt and jealousy are only expressed in humans. In the case of jealousy, its adaptive value has been linked to the prevention of sexual infidelity or fairness. So why would dogs feel jealousy? I suggest that understanding how social emotions have been bred into dogs can help us understand our own emotions, including their functionality — and potentially their mechanisms.

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