Evolution Commons^™

Function Of Drosophila Melanogaster Domesticated Transposable Element Protein Dplg3 In Oogenesis And Total Fitness, Aron Herrera

2025 Fall Honors Capstones Projects - Archive

Transposable elements (TEs) are selfish DNA segments capable of self-replication and reinsertion within genomes, often harming hosts. Rarely, host genomes can adopt TEs and use their proteins for new cellular functions through molecular domestication. One example primarily expressed in Drosophila melanogaster ovaries is DPLG3. Previous Betrán Lab students generated DPLG3 loss-of-function flies and found that their ovaries misregulated one primordial and 14 testis-specific genes, leading to variable ovarian malformations. However, it is unclear when during oogenesis these misexpressions occur. We will extract RNA from non-rudimentary ovaries at early and late stages to generate cDNA for qRT-PCR analysis of three …

Analyzing Head Morphology Trends With Increasing Population Density In A Jamaican Lizard Species, Lillian Durand

2024 Fall Honors Capstone Projects - Archive

Anolis lizards are model organisms for studying natural selection and evolutionary processes. One trait that is hypothesized to be advantageous for males is head size, as larger heads lead to stronger bite forces and increased likelihood in outcompeting other males for mates. To better understand how linked head size and intraspecific competition are, the head morphology of male A. lineatopus was analyzed among Jamaican populations with varying levels of population density. Population densities were determined using standardized plot surveys and mark resight models. Head dimensions and body condition for individual lizards were measured at each site. My study found that …

Communication In Noise Is The Window On Cognition, R. Haven Wiley

Animal Sentience

As Griffin surmised, communication is the window on cognition, but as shown here, only if it is noisy. This commentary is an invitation to consider the full implications of the evolution of noisy communication. A combination of Information Theory, Signal Detection Theory, and Natural Selection, in a unified theory of the evolution of communication, reveals that noise is inevitable. All organisms are thus decision makers. Perception, thought, freedom of decision, self-awareness, metabolism, and natural selection all share the consequences of signals in noise. A full understanding of each requires attention to the errors of receivers. Griffin’s hunch is correct with …

Isolation Of Gametophytic Selection And Selective Embryo Abortion In Mimulus Guttatus, Desmond C. Willson

University Honors Theses

A lack of genomic studies examining gametophytic selection (GS) and selective embryo abortion (SEA)--which occur during the reproduction of angiosperms--leaves questions regarding the adaptive and evolutionary effects of these processes. Analyzing deviations from Mendelian segregation offers an avenue for identifying loci targeted by GS and SEA, and their contributions to purging of genetic load. However, other selective processes such as meiotic drive and cytonuclear interactions, as well as pollen and ovule abortion, can cause distortion. To distinguish the effects of GS and SEA from other causes of distortion, we will perform reciprocal crosses between highly homozygous and highly heterozygous individuals …

Exploring Ecological Drivers Of Evolution Of The Brain, Cognition, And Behavior, Meghan Korte

Biology Dissertations - Archive

Evolutionary theory proposes that increases in brain size confer cognitive and behavioral benefits that offset the expensive investment in brain tissue. However, few studies have examined the relationship between brain size, cognition, and behavior within species. The majority of research has focused on cross-species comparisons, thus there is a need for empirical research within species examining how contrasting ecological pressures select for cognitive and behavioral benefits and how these may evolve in tandem with changes in brain size. My dissertation addresses this gap by examining: 1) Whether selection on brain size is linked to improvements in cognitive ability; 2) How …

Twelve Wallace Myths, Charles H. Smith

Faculty/Staff Personal Papers

Alfred Russel Wallace’s (1823-1913) bicentennial year is a good time to take stock. In this presentation I discuss twelve Wallace-related issues that I feel have been poorly taken up. These range from the biological to the biographical, including subjects such as social criticism, human evolution, autobiographical memory, natural selection, national affinities, spiritualism, and wokeism.

Alfred Russel Wallace Notes 28. Wallace's 'Change Of Mind', Revisited, Charles H. Smith

Faculty/Staff Personal Papers

Alfred Russel Wallace (1823−1913) is best known for his work on the theory of evolution by natural selection, and studies on biogeography. This fame has not, however, prevented appraisals of his work that sometimes depart from rational interpretations of his actual words. In this study, the frequently-offered notion that his adoption of spiritualism in late 1866 caused him to reverse himself on the universality of natural selection is taken to task, with arguments linked to his own words on the subject.

Alfred Russel Wallace Notes 27. When Wallace Broke With Darwin., Charles H. Smith

Faculty/Staff Personal Papers

The year 1866 was the first year Alfred Russel Wallace showed definite signs of breaking with Darwin over the limits of natural selection. Attention is drawn to a July 1866 exchange of letters between the two, and how this foreshadowed what followed.

Alfred Russel Wallace Notes 25. Wallace And The 'Physical Environment'., Charles H. Smith

Faculty/Staff Personal Papers

Alfred Russel Wallace’s natural selection essay of 1858 has been held to frame a greater role for the physical environment in forcing selection regimes than we find in Darwin’s writings, but here that verdict is challenged by a re-examination of both the essay itself, and period usage of the term ‘physical.’

Neural And Behavioral Evolution In An Eavesdropper With A Rapidly Evolving Host, Aaron W. Wikle

Electronic Theses and Dissertations

The diversification of animal communication systems is driven by many interacting factors. Unintended receivers play an important part in this process, yet little is known about their role in signal evolution. Flies of the genus Ormia are parasitoids of crickets and rely on acoustic cues to locate hosts. In Hawaii, selection imposed by Ormia ochracea has led to recent and rapid diversification in the songs of their host. Here, we compare neural and behavioral responses of Hawaiian flies to those of an ancestral population to understand the role of parasitoid sensory and behavioral variation in the evolution of host songs. …

Alfred Russel Wallace Notes 22: Stumbling Blocks To An Understanding Of Wallace's Worldview, Charles H. Smith

Faculty/Staff Personal Papers

The writings of Alfred Russel Wallace (1823−1913) present a challenge to modern readers, both for the large range of subjects he entertained, and his unique point of view. In this short treatment, ten ‘stumbling blocks’ to an appreciation of Wallace’s thought are outlined which, it is suggested, have caused problems of interpretation in the past.

Repeated Targets Of Natural Selection During Ecological Transitions Of Fish Across Salinity Boundaries, Jonathan P. Velotta, Stephen D. Mccormick, Andrew Whitehead, Catherine S. Durso, Eric T. Schultz

EEB Articles

Ecological transitions across salinity boundaries have led to some of the most important diversification events in the animal kingdom, especially among fishes. Adaptations accompanying such transitions include changes in morphology, diet, whole-organism performance, and osmoregulatory function, which may be particularly prominent since divergent salinity regimes make opposing demands on systems that maintain ion and water balance. Research in the last decade has focused on the genetic targets underlying such adaptations, most notably by comparing populations of species that are distributed across salinity boundaries. Here, we synthesize research on the targets of natural selection using whole-genome approaches, with a particular emphasis …

Alfred Russel Wallace Notes 19: Social Evolution's Useful Idiots, Charles H. Smith

Faculty/Staff Personal Papers

In today’s world liberals look at conservatives as the villains, and vice versa. How did this come to pass? In this essay a model of the biological roots of liberalism and conservatism is advanced; this is followed by a discussion of why cognitive dissonance may represent the key process in our social evolution. Alfred Russel Wallace’s experience with cognitive dissonance is then detailed, including how he dealt with it.

How Deep Do We Have To Go To Rehabilitate Evolutionary Psychology? Reply To Bjorklund, Ellis, & Geary (2022), David S. Moore, David C. Witherington, Darcia Narvaez, Timothy I. Vandiver, Robert Lickliter

Pitzer Faculty Publications and Research

Disciplines like evolutionary-developmental psychology admirably focus on trying to rehabilitate Narrow Evolutionary Psychology (NEP) from within, by adding a developmental focus to NEP’s tenets of adaptationism and computationalism. We argue, however, that these tenets are fundamentally incompatible with taking psychology and its development seriously, and that the kinds of modifications introduced by evolutionary-developmental psychologists do not go deep enough to qualitatively change the non-developmental outlook of NEP.

Assessing The Impact Of Historical Story Telling On Student Learning Of Natural Selection, Janice Marie Fulford

Dissertations

Research suggests that because of its historical nature, the learning of evolutionary biology is problematic compared to that of other science disciplines. While explanations used in historical sciences often employ historical narratives, which are distinct from narratives in other contexts, such as stories, the two types of narratives have structural similarities that suggest the potential role of stories based in the history of science for the teaching of evolutionary biology. Stephen Klassen, a prominent science educator, has studied how stories from the history of physics can promote the learning of and attitudes towards science. Klassen’s pioneering work identifies structural components …

Beyond The Adaptationist Legacy: Updating Our Teaching To Include A Diversity Of Evolutionary Mechanisms, Rebecca M. Price, Kathryn E. Perez

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

A paradigm shift away from viewing evolution primarily in terms of adaptation - the "adaptationist programme" of Gould and Lewontin - began in evolutionary research more than 35 years ago, but that shift has yet to occur within evolutionary education research or within teaching standards. We review three instruments that can help education researchers and educators undertake this paradigm shift. The instruments assess how biology undergraduates understand three evolutionary processes other than natural selection: genetic drift, dominance relationships among allelic pairs, and evolutionary developmental biology (evo-devo). Testing with these instruments reveals that students often explain a diversity of evolutionary mechanisms …

A Survey Of The Common Loon (Gavia Immer) Genome Reveals Patterns Of Natural Selection, Zach G. Gayk

All NMU Master's Theses

With rapid advances in Next-Generation Sequencing technology, comparative genomics has become a viable method for studying the adaptation of species to their environment at the genome level. I investigated this in common loons (Gavia immer)—for which molecular adaptation has not been characterized—by finding signatures of positive selection as evidence for genomic adaptation.

I used Illumina short read sequencing data from a single female common loon to produce a fragmented assembly of the common loon (Gavia immer) genome. The resulting assembly had a contig N50 of 814 bp, a total length of 767,326,331 bp, and 45.7 % …

A Homogenizing Process Of Selection Has Maintained An 'Ultra-Slow' Acetylation Nat2 Variant In Humans, Blandine Patillon, Pierre Luisi, Estella S. Poloni, Sotiria Boukouvala, Pierre Darlu, E. Genin, Audrey Sabbagh

Human Biology Open Access Pre-Prints

N-acetyltransferase 2 (NAT2) is an important enzyme involved in the metabolism of a wide spectrum of naturally occurring xenobiotics, including therapeutic drugs and common environmental carcinogens. Extensive polymorphism in NAT2 gives rise to a wide interindividual variation in acetylation capacity which influences individual susceptibility to various drug-induced adverse reactions and cancers. Striking patterns of geographic differentiation have been described for the main slow acetylation variants of the NAT2 gene, suggesting the action of natural selection at this locus. In the present study, we took advantage of the whole-genome sequence data available from the 1000 Genomes project to investigate the …

Wallace And Incipient Structures: A World Of "More Recondite" Influences, Charles H. Smith

DLPS Faculty Publications

Alfred Russel Wallace is well-known for his co-discovery of the principle of natural selection. Natural selection is usually considered a process, but it is not clear that Wallace regarded it in exactly these terms. In fact he more likely thought of the relationships involved as representing what we would now term a “state space,” a negative feedback loop wherein populations are maintained at healthy levels through elimination of the unfit. Both before and after the advent of natural selection Wallace clung to the idea that “more recondite forces” were shaping the nature and direction of evolution; this is especially evident …

Wallace On Natural Selection: What Did He Really Have In Mind?, Charles H. Smith

DLPS Faculty Publications

No abstract provided.

Fitness: Philosophical Problems, Grant Ramsey, Charles H. Pence

Faculty Publications

Fitness plays many roles throughout evolutionary theory, from a measure of populations in the wild to a central element in abstract theoretical presentations of natural selection. It has thus been the subject of an extensive philosophical literature, which has primarily centred on the way to understand the relationship between fitness values and reproductive outcomes. If fitness is a probabilistic or statistical quantity, how is it to be defined in general theoretical contexts? How can it be measured? Can a single conceptual model for fitness be offered that applies to all biological cases, or must fitness measures be case-specific? Philosophers have …

A Further Look At The 1858 Wallace-Darwin Mail Delivery Question, Charles H. Smith

DLPS Faculty Publications

Recent investigations have led to a conclusion that Alfred Russel Wallace probably mailed his ‘Ternate’ paper on natural selection to Darwin a month later than some have thought, thus freeing Darwin from possible accusations of plagiarism. Further examination of the question suggests this conclusion is premature, as the evidence in favor of the later mailing date appears to be shakier than first thought.

The Real Alfred Russel Wallace: Essays On An Outside-The-Box Thinker, Charles H. Smith

Faculty/Staff Personal Papers

Alfred Russel Wallace (8 January 1823 – 7 November 1913), English polymath and social critic, ranks high on the list of the most interesting characters in the history of science. Nevertheless, and despite a life filled with achievement, he has often been marginalized in the halls of learning. The truth is, Wallace was something of an “outside–the–box” thinker, and his many forays into the murkier areas of science and social science cost him a lot of potential supporters. Still others, while recognizing his intellectual talents in general, have looked at the full span of his work and interests as a …

Natural Selection: A Concept In Need Of Some Evolution?, Charles H. Smith

DLPS Faculty Publications

In some respects natural selection is a quite simple theory, arrived at through the logical integration of three propositions (the presence of variation within natural populations, an absolutely limited resources base, and procreation capacities exceeding mere replacement numbers) whose individual truths can hardly be denied. Its relation to the larger subject of evolution, however, remains problematic. It is suggested here that a scaling-down of the meaning of natural selection to “the elimination of the unfit,” as originally intended by Alfred Russel Wallace (1823-1913), might ultimately prove a more effective means of relating it to larger-scale, longer-term, evolutionary processes.

Ecological Opportunity And The Origin Of Adaptive Radiations, J. B. Yoder, E. Clancey, S. Des Roches, J. M. Eastman, L. Gentry, W. Godsoe, T. J. Hagey, D. Jochimsen, B. P. Oswald, J. Robertson, B. Sarver, J. J. Schenk, S. F. Spear, L. J. Harmon

Biology

Ecological opportunity – through entry into a new environment, the origin of a key innovation or extinction of antagonists – is widely thought to link ecological population dynamics to evolutionary diversification. The population-level processes arising from ecological opportunity are well documented under the concept of ecological release. However, there is little consensus as to how these processes promote phenotypic diversification, rapid speciation and adaptive radiation. We propose that ecological opportunity could promote adaptive radiation by generating specific changes to the selective regimes acting on natural populations, both by relaxing effective stabilizing selection and by creating conditions that ultimately generate diversifying …

Alfred Russel Wallace Notes 1 : Authorship Of Two Early Works, Charles H. Smith, Michael Taylor, Gerrell M. Drawhorn

DLPS Faculty Publications

No abstract provided.

Alfred Russel Wallace, Geographer, Charles H. Smith

DLPS Faculty Publications

Among the great explorers and thinkers who advanced geography in the nineteenth century and helped it evolve into the subject that exists today is a man who is not always connected with the field, Alfred Russel Wallace (1823–1913). Most commonly recognized as ‘the other man’ in the history of the discovery of the principle of natural selection, Wallace’s commitment to the study of landscape and its physical, biological, and human elements was lifelong, and resulted in a wide range of contributions to biogeography, physical geography, human geography, and ethnography. In this year of the double anniversaries of Charles Darwin’s birth …

The Origin Of Human Races And The Antiquity Of Man Deduced From The Theory Of “Natural Selection” (1864), Alfred Russel Wallace

Alfred Russel Wallace Classic Writings

No abstract provided.

Mimicry, And Other Protective Resemblances Among Animals (1867), Alfred Russel Wallace

Alfred Russel Wallace Classic Writings

No abstract provided.

On The Tendency Of Varieties To Depart Indefinitely From The Original Type (1858), Alfred Russel Wallace

Alfred Russel Wallace Classic Writings

No abstract provided.