Ecology and Evolutionary Biology Commons^™

Predicting Climate-Sensitive Water-Related Disease Trends Based On Health, Seasonality And Weather Data In Fiji, Sarah Nelson, Aaron Jenkins, Stacy D. Jupiter, Pierre Horwitz, Sangeeta Mangubhai, Seye Abimbola, Anaseini Ratu, Timoci Naivalulevu, Joel Negin

Research outputs 2022 to 2026

Leptospirosis, typhoid and dengue are three water-related diseases influenced by environmental factors. We examined whether seasonality and rainfall predict reported syndromes associated with leptospirosis, typhoid and dengue in Fiji. Poisson generalised linear models were fitted with s6 early warning, alert and response system (EWARS) syndromic conditions from March 2016 until December 2020, incorporating seasonality, temperature and rainfall. Watery diarrhoea, prolonged fever and suspected dengue displayed seasonal trends with peaks corresponding with the rainy season, while bloody diarrhoea, acute fever with rash and acute jaundice syndrome did not. Seasonality was the most common predictor for watery and bloody diarrhoea, prolonged fever, …

Revitalizing Conservation And Management Of The American Crocodile (Crocodylus Acutus) In The Dominican Republic, Robert Greco

UNF Graduate Theses and Dissertations

Crocodilian populations declined globally during the 20^th century because of overhunting and habitat loss. Some crocodilian populations have recovered recently through legal protections and habitat restoration, but the status of many crocodilian populations are still unknown because of a lack of recent data. The American crocodile (Crocodylus acutus) population in the Dominican Republic (DR) is one of these data-deficient populations, with country-wide surveys not carried out since the 1980s. From May through July 2021 we surveyed areas within DR where C. acutus is still likely residing. Our surveys yielded no crocodile sightings in Monte Cristi, suggesting that …

Histological Comparison Of Shark Dermis Across Various Ecomorphologies, Olivia Schuitema

UNF Graduate Theses and Dissertations

The integument plays essential roles in the structural support, protection, and hydrodynamic capability among fishes. Most shark skin research has been done on the external epidermal layer containing the dermal denticles, while the larger dermis layer has been mostly ignored. The dermis layer in sharks is composed of two layers, the upper stratum laxum and the lower stratum compactum, holding supportive collagen and elastin fibers. There may be morphological and compositional differences in the dermis layers across various species of sharks, although the extent of such is unknown. These potential differences may be represented by various dermal thicknesses and different …

An Analysis Of The Spatial Genetic Structure Of A Hybrid Zone Between Two Species Of Killifish, Fundulus Heteroclitus And F. Grandis, Andrew Lee Hardy

UNF Graduate Theses and Dissertations

Hybridization offers unique insight into the evolutionary process of speciation and the forces that maintain barriers to reproduction. In northeast Florida, a hybrid zone between two species of killifish, Fundulus heteroclitus and F. grandis, has been identified near Flagler Beach, FL, although the exact boundaries of the hybrid zone remain unknown (Gonzalez et al. 2009). This study aims to determine the fine-scale spatial genetic patterns of the hybrid zone and test the hypothesis that species ranges are influenced by changes in dominant vegetation. Results from an ADMIXTURE analysis and F_ST data indicated the boundary of the area of …

Validation Of Edna Metabarcoding : A Comparison To Traditional Survey Methods In Ozark Streams, Veronica Marian Lee

Masters Theses

Environmental DNA (eDNA) sampling provides a method for assessing fish communities that has potential as a supplement to traditional sampling methods due to its ability to save time as well as its non-invasive nature. This is a method in which from just one sample, eDNA from multiple individual species are able to be sequenced in tandem and the resulting reads identified to describe a community. In order to evaluate this technique and its efficacy for monitoring fish community diversity, we collected water samples alongside surveys performed by the Missouri Department of Conservation sampling program in summers 2020-21. DNA were extracted …

Developmental Plasticity Of Stress Tolerance And Life-History Strategy To Artificial Light At Night, Alyssa M. Bonfoey

University of the Pacific Theses and Dissertations

Artificial light at night (ALAN), or ecological light pollution, is increasingly prevalent worldwide. Exposure to ALAN tends to negatively impact animals—particularly, nocturnal animals—but life-history strategies may mitigate these costs. Animals in many regions are also increasingly exposed to climate-related stressors, such as heat and drought. Yet, interactions among ALAN, life-history strategy, and stress tolerance are unknown. Therefore, I determined if developmental ALAN exposure (1) affects development, (2) affects adult phenotype, including heat and desiccation tolerance, and (3) affects and/or interacts with life-history strategy. To address my aims, I used the variable field cricket (Gryllus lineaticeps) because its geographic range is …

Microbial Community Analysis: Biofilm Inhibition & Algae Associated Community Structure, Michelle V. Fong

University of the Pacific Theses and Dissertations

Natural products chemistry is the pursuit of bioactive small molecules from living organisms. These can be classified as primary metabolites if they are essential to survival, and secondary metabolites if they are accessory, playing a role in communication, defense, recruitment, etc.. Natural products have made a significant contribution to society – of 1,881 FDA-approved drugs from 1981 to 2019, 4% were pure natural products, 19% were natural products derived, and 3% were synthetic drugs with a natural products pharmacophore targeting a wide range of diseases and infections (Newman & Cragg, 2020). Pharmacophores are structural components of drugs that are responsible …

Forecasting The Outcomes Of Managing A Rare Endemic Plant At Its Elevational Limit Under Climate Change Scenarios, Ethan Reibsome

Cal Poly Humboldt theses and projects

Lupinus constancei (Lassics lupine) is an exceptionally rare forb with a population that in 2020 consisted of 1,300 individuals located on two adjacent mountaintops in northwestern California, USA. Past work has demonstrated the species is threatened by high levels of seed predation by small mammals, which is likely the result of fire exclusion and the subsequent vegetation encroachment that both increases small mammal habitat and directly reduces suitable habitat for the species. Because of this, active management through caging of reproductive individuals to reduce seed consumption has been conducted every year since 2003. In addition, growing season temperatures have increased …

Legal Recognition Of Animal Sentience: The Case For Cautious Optimism, Jane Kotzmann

Animal Sentience

Rowan et al.’s target article provides a valuable indication of the work that was required to reach the point where animals are recognised as sentient in various laws. To ensure this work was not in vain, the language of sentience needs to be used as a moral currency to demand further cultural change involving greater human respect for animals.

Population Characteristics Of Three Black Bass Species In The Upper Ohio River Drainage, Levi Foster Brown

Graduate Theses, Dissertations, and Problem Reports (ETD)

In West Virginia, species of black bass are economically and ecologically important and support popular fisheries. In the state’s large, navigable river systems, recent information suggests that anglers consider these fisheries diminished relative to their historic stocks. This study sought to describe the population characteristics of Largemouth, Smallmouth, and Spotted Bass in the upper Ohio River drainage and evaluate possible management actions. Low relative abundances coupled with poor growth estimates for Largemouth and Spotted Bass suggests that a suite of environmental and anthropogenic factors may be reducing the quality of their recreational fisheries. Conversely, demographic estimates produced for Smallmouth Bass …

Population Dynamics, Relative Abundance, And Habitat Suitability Of Adult Red Drum (Sciaenops Ocellatus) In Nearshore Waters Of The North-Central Gulf Of Mexico, Crystal Hightower, J. Marcus Drymon, Amanda E. Jefferson, Matthew B. Jargowsky, Emily A. Seubert, Simon Dedman, John Mareska, Sean P. Powers

University Faculty and Staff Publications

In the Gulf of Mexico, the red drum (Sciaenops ocellatus) is an immensely popular sportfish, yet the Gulf of Mexico stock is currently managed as data-limited in federal waters. The results of the federal stock assessment conducted in 2016 for Gulf of Mexico red drum were not recommended for providing management advice. Consequently, we sought to address data gaps highlighted in the assessment by producing up-to- date overall and sex-specific growth models, standardized indices of relative abundance, and predictions of habitat suitability and by updating estimates of natural mortality. Using a time series for the period of 2006–2018, we assigned …

Modernizing Fish Surveys: Evaluating How Reliable Environmental Dna Sampling Is In Monitoring Fish Populations, Alicia Cozza

EWU Masters Thesis Collection

No abstract provided.

Plague Risk In The Western United States Over Seven Decades Of Environmental Change, Colin J. Carlson, Sarah N. Bevins, Boris V. Schmid

United States Department of Agriculture Wildlife Services: Staff Publications

After several pandemics over the last two millennia, the wildlife reservoirs of plague (Yersinia pestis) now persist around the world, including in the western United States. Routine surveillance in this region has generated comprehensive records of human cases and animal seroprevalence, creating a unique opportunity to test how plague reservoirs are responding to environmental change. Here, we test whether animal and human data suggest that plague reservoirs and spillover risk have shifted since 1950. To do so, we develop a new method for detecting the impact of climate change on infectious disease distributions, capable of disentangling long-term trends (signal) and …

A Systematic Map Of Human-Carnivore Coexistence, Cassandre C. Venumière-Lefebvre, Stewart W. Breck, Kevin R. Crooks

United States Department of Agriculture Wildlife Services: Staff Publications

Carnivore populations globally have largely declined, and coexistence, where humans and carnivores share landscapes, plays a crucial role in carnivore conservation. However, the term “coexistence” is often used in scientific and popular literature without being clearly defined. Herein, we provide a global perspective on what coexistence is and how it is studied. We conducted a systematic map of 366 articles published between 1987 and 2020 to characterize human-carnivore coexistence literature according to coexistence definitions, temporal trends, geographic and taxonomic focus, and four thematic aspects of coexistence: carnivore ecology, human endeavors, social conflict and human-carnivore conflict. We used chi-squared tests and …

Wild Pig Removal Reduces Pathogenic Bacteria In Low-Order Streams, Sara A. Bolds, B. Graeme Lockaby, Latif Kalin, Stephen S. Ditchkoff, Mark D. Smith, Kurt Vercauteren

United States Department of Agriculture Wildlife Services: Staff Publications

Invasive wild pig populations have undergone enormous increases in the United States and particularly across the southern U.S. in recent years. High fecundity rates and abilities to adapt quickly to varied habitats have enabled pig populations to become entrenched and difficult to eliminate. The pigs cause many negative impacts on ecosystems including degradation of water quality through infusion of fecal contamination and other non-point source pollutants. Our goal was to determine the effects of pig removal on water quality in streams that were known to be significantly polluted by pig activity Bolds (J Environ Qual 50: 441–453, 2021). We compared …

Relationship Between Reproductive Hormones And Migration Distance In A Polygynous Songbird, The Red‑Winged Blackbird (Agelaius Phoeniceus), Michelle A. Eshleman, Page E. Klug, Esther Morales‑Vega, Björn Wissel, Timothy J. Grelves

United States Department of Agriculture Wildlife Services: Staff Publications

Many bird species migrate to southern overwintering locations to avoid harsh conditions at their breeding grounds, but at the cost of an energetically demanding migration that may delay their spring reproductive development. Previous work on the relationship between migration distance and reproductive readiness has primarily focused on early season baseline testosterone in both males and females. However, for females, testosterone alone may not be the appropriate measurement of reproductive development. Estradiol, a metabolite of testosterone that is essential for breeding behaviors and reproduction, should also be measured. Furthermore, baseline testosterone varies throughout the day and may change due to social …

A Model For Leveraging Animal Movement To Understand Spatio-Temporal Disease Dynamics, Mark Q. Wilber, Anni Yang, Raoul Boughton, Kezia R. Manlove, Ryan S. Miller, Kim M. Pepin, George Wittemyer

United States Department of Agriculture Wildlife Services: Staff Publications

The ongoing explosion of fine-resolution movement data in animal systems provides a unique opportunity to empirically quantify spatial, temporal and individual variation in transmission risk and improve our ability to forecast disease outbreaks. However, we lack a generalizable model that can leverage movement data to quantify transmission risk and how it affects pathogen invasion and persistence on heterogeneous landscapes. We developed a flexible model ‘Movement-driven modelling of spatio-temporal infection risk’ (MoveSTIR) that leverages diverse data on animal movement to derive metrics of direct and indirect contact by decomposing transmission into constituent processes of contact formation and duration and pathogen deposition …

Accounting For Animal Movement Improves Vaccination Strategies Against Wildlife Disease In Heterogeneous Landscapes, Katherine M. Mcclure, Guillaume Bastille-Rousseau, Amy J. Davis, Carolyn A. Stengel, Kathleen M. Nelson, Richard B. Chipman, George Wittemyer, Zaid Abdo, Amy Gilbert, Kim M. Pepin

United States Department of Agriculture Wildlife Services: Staff Publications

Oral baiting is used to deliver vaccines to wildlife to prevent, control, and eliminate infectious diseases. A central challenge is how to spatially distribute baits to maximize encounters by target animal populations, particularly in urban and suburban areas where wildlife such as raccoons (Procyon lotor) are abundant and baits are delivered along roads. Methods from movement ecology that quantify movement and habitat selection could help to optimize baiting strategies by more effectively targeting wildlife populations across space. We developed a spatially explicit, individual-based model of raccoon movement and oral rabies vaccine seroconversion to examine whether and when baiting …

Concentration-Response Of An Anthraquinone-Based Repellent For Raccoons (Procyon Lotor), Shylo Johnson, Shelagh T. Deliberto, Kathleen Urchek, Amy T. Gilbert, Scott J. Werner

United States Department of Agriculture Wildlife Services: Staff Publications

Wildlife repellents can be part of non-lethal management strategies to reduce the negative impacts of wildlife to property, agricultural production, and human health and safety. Raccoons (Procyon lotor) are associated with negative impacts in all three of these areas. Anthraquinone is a useful avian repellent and its utility as a mammalian repellent is still being explored. Our objective was to evaluate laboratory efficacy of an anthraquinone-based repellent for raccoons using different concentrations. We fed captive raccoons whole corn treated at 0.5%, 1%, 1.5% and 2% anthraquinone and examined their behavioral response related to feeding repellency including consumption and change in …

Using Noninvasive Genetics For Estimating Density And Assessing Diet Of Urban And Rural Coyotes In Florida, Usa, Bryan M. Kluever, Martin B. Main, Stewart W. Breck, Robert C. Lonsinger, John H. Humphrey, Justin W. Fischer, Michael P. Milleson Usda Aphis Wildlife Services, Gainesville, Antionette J. Piaggio

United States Department of Agriculture Wildlife Services: Staff Publications

Coyotes (Canis latrans) are expanding their range and due to conflicts with the public and concerns of Coyotes affecting natural resources such as game or sensitive species, there is interest and often a demand to monitor Coyote populations. A challenge to monitoring is that traditional invasive methods involving live-capture of individual animals are costly and can be controversial. Natural resource management agencies can benefit from contemporary noninvasive genetic sampling approaches aimed at determining key aspects of Coyote ecology (e.g., population density and food habits). However, the efficacy of such approaches under different environmental conditions is poorly understood. Our …

Spatial Risk Modeling Of Cattle Depredation By Black Vultures In The Midwestern United States, Brandon M. Quinby, Bryan M. Kluever, Grant N. Burcham, Lee Humberg, Landon R. Jones, Marian L. Wahl, Patrick A. Zollner

United States Department of Agriculture Wildlife Services: Staff Publications

ock operations through depredation of stock are a cause of human‐wildlife conflict. Management of such conflict requires identifying environmental and non‐environmental factors specific to a wildlife species' biology and ecology that influence the potential for livestock depredation to occur. Identification of such factors can improve understanding of the conditions placing livestock at risk. Black vultures (Coragyps atratus) have expanded their historical range northward into the midwestern United States. Concomitantly, an increase in concern among agricultural producers regarding potential black vulture attacks on livestock has occurred. We estimated area with greater or lesser potential for depredation of domestic cattle by black …

Invasive Predators Affect Community-Wide Pollinator Visitation, Christina T. Liang, Aaron B. Shiels, William P. Haines, Manette E. Sandor, Clare E. Aslan

United States Department of Agriculture Wildlife Services: Staff Publications

Disruption of plant–pollinator interactions by invasive predators is poorly understood but may pose a critical threat for native ecosystems. In a multiyear field experiment in Hawai’i, we suppressed abundances of globally invasive predators and then observed insect visitation to flowers of six native plant species. Three plant species are federally endangered (Haplostachys haplostachya, Silene lanceolata, Tetramolopium arenarium) and three are common throughout their range (Bidens menziesii, Dubautia linearis, Sida fallax). Insect visitors were primarily generalist pollinators, including taxa that occur worldwide such as solitary bees (e.g., Lasioglossum impavidum), social bees (e.g., …

Rodents In Agriculture: A Broad Perspective, Gary Witmer

United States Department of Agriculture Wildlife Services: Staff Publications

The largest taxonomic group of mammals is rodents, with over 2200 species known around the world [1]. More recently, it was stated that over 2500 species exist [2]. Many species exist on all continents, with the exception of Antarctica. Rodents have adapted to all ecosystems of the world, including tundra, alpine, temperate forests, grasslands, arid regions, and aquatic systems. They provide many ecosystem functions, including soil aeration and mixing, seed and spore dispersal, vegetation succession, and being an important food source for predatory animals. Some species of rodents are even consumed by people in some parts of the world. Most …

Transmission Of Antibiotic Resistance At The Wildlife-Livestock Interface, Shinyoung Lee, Peixin Fan, Ting Liu, Anni Yang, Raoul K. Boughton, Kim M. Pepin, Ryan S. Miller, Kwangcheol Casey Jeong

United States Department of Agriculture Wildlife Services: Staff Publications

Antibiotic-resistant microorganisms (ARMs) are widespread in natural environments, animals (wildlife and livestock), and humans, which has reduced our capacity to control life threatening infectious disease. Yet, little is known about their transmission pathways, especially at the wildlife-livestock interface. This study investigated the potential transmission of ARMs and antibiotic resistance genes (ARGs) between cattle and wildlife by comparing gut microbiota and ARG profiles of feral swine (Sus scrofa), coyotes (Canis latrans), cattle (Bos taurus), and environmental microbiota. Unexpectedly, wild animals harbored more abundant ARMs and ARGs compared to grazing cattle. Gut microbiota of cattle was …

Economic Damages Of Wild Pigs In Non-Traditional Areas: From The Fairway To The After Life, Sophie Mckee, Julie Elser, Maryfrances Miller, Lirong Liu, Ryan Miller, Steven S. Shwiff, Stephanie A. Shwiff

United States Department of Agriculture Wildlife Services: Staff Publications

Invasive wild pigs are widely known to cause damage to agricultural properties and commodities, but less has been reported about damages to other types of property. A survey was distributed to golf courses and cemeteries across Texas to explore the extent of damage these properties experience. While both property types reported significant damages, golf courses were found to experience more damage than cemeteries. Using average reported costs and predicted county-level damage, total costs for all golf courses and cemeteries across the state were estimated to exceed $1.6 million USD per year.

Sars-Cov-2 In Wildlife: Q & A With Alan B. Franklin, Alan B. Franklin

United States Department of Agriculture Wildlife Services: Staff Publications

Welcome Dr Franklin and thank you for joining us to help social workers increase their knowledge about the interconnectedness of humans, other mammals, and the environment. Let's begin with zoonosis.

Viruses can be transferred from wild and domestic animals to humans in a process called zoonosis.

Strength In Numbers: Avian Influenza A Virus Transmission To Poultry From A Flocking Passerine, J. Jeffrey Root, Jeremy W. Ellis, Susan A. Shriner

United States Department of Agriculture Wildlife Services: Staff Publications

The effects of flock size of European starlings (Sturnus vulgaris) was experimentally manipulated to assess the potential of influenza A virus (IAV; H4N6) transmission from a flocking passerine to bobwhite quail (Colinus virginianus) through shared food and water resources to mimic starling intrusions into free-range and backyard poultry operations. Of the three starling flock sizes tested (n = 30, n = 20 and n = 10), all successfully transmitted the virus to all or most of the quail in each animal room (6/6, 6/6 and 5/6) by the end of the experimental period, as determined by seroconversion and/or viral RNAshedding. …

Predicting Consistent Foraging Ecologies Of Migrating Waterbirds: Using Stable Isotope And Parasite Measurements As Indicators Of Landscape Use, Kate L. Sheehan, Brian S. Dorr, Stephen A. Clements, Terrel W. Christie, Katie Hanson-Dorr, Scott A. Rush, J. Brian Davis

United States Department of Agriculture Wildlife Services: Staff Publications

The emergence of novel human pathogens is frequently linked with zoonotic events and human-wildlife interactions that promote disease transmission. Consequently, surveillance of wildlife populations for candidate diseases that could spread to humans is beneficial, but requires widespread collections of numerous samples. A legitimate means to acquire large sample sizes of waterfowl is through cooperation between researchers and hunters, who also work in concert with natural resource managers, landowners, and agricultural entities -e.g., aquaculture facilities. In addition to understanding the occurrence and spread of parasites and pathogens by birds, these samples can be used to answer questions about the ecology of …

Social Learning Of Avoidance Behaviors: Trap Aversion In Captive Coyotes, Julie Young, Jeffrey T. Schultz, Buck Jolley, Nekol Basili, John P. Draper

United States Department of Agriculture Wildlife Services: Staff Publications

Social learning can help animals gain knowledge rapidly and may enhance survival. In species that are subjected to capture in foothold traps and then lethally removed, such as the coyote (Canis latrans), learning to avoid traps is critical to survival. Here, we tested social learning of trap avoidance behavior in three experimental scenarios with captive coyotes. In the first experiment, coyotes observed an unfamiliar coyote get captured in a foothold trap (i.e., demonstrator) or did not observe a demonstrator and were therefore naïve to traps. The coyotes that observed a demonstrator showed similar latencies to approach the trap …

Integrating Data Types To Estimate Spatial Patterns Of Avian Migration Across The Western Hemisphere, Timothy D. Meehan, Sarah P. Saunders, William V. Deluca, Nicole L. Michel, Joanna Grand, Jill L. Deppe, Miguel F. Jimenez, Erika J. Knight, Nathaniel E. Seavy, Melanie A. Smith, Lotem Taylor, Chad Witko, Michael E. Akresh, David R. Barber, Erin M. Bayne, James C. Beasley, Jerrold L. Belant, Richard O. Bierregaard, Keith L. Bildstein, Than J. Boves, John N. Brzorad, Steven P. Campbell, Antonio Celis-Murillo, Hilary A. Cooke, Robert Domenech, Laurie Goodrich, Elizabeth A. Gow, Aaron Haines, Michael T. Hallworth, Jason M. Hill, Amanda E. Holland, Scott Jennings, Roland Kays, Tommy King, Stuart A. Mackenzie, Peter P. Marra, Rebecca A. Mccabe, Kent P. Mcfarland, Michael J. Mcgrady, Ron Melcer, D. Ryan Norris, Russell E. Norvell, Olin E. Rhodes, Christopher C. Rimmer, Amy L. Scarpignato, Adam Shreading, Jesse L. Watson, Chad R. Wilsey

United States Department of Agriculture Wildlife Services: Staff Publications

For many avian species, spatial migration patterns remain largely undescribed, especially across hemispheric extents. Recent advancements in tracking technologies and high-resolution species distribution models (i.e., eBird Status and Trends products) provide new insights into migratory bird movements and offer a promising opportunity for integrating independent data sources to describe avian migration. Here, we present a three-stage modeling framework for estimating spatial patterns of avian migration. First, we integrate tracking and band re-encounter data to quantify migratory connectivity, defined as the relative proportions of individuals migrating between breeding and nonbreeding regions. Next, we use estimated connectivity proportions along with eBird occurrence …