Ecology and Evolutionary Biology Commons^™

Fisheries Occasional Publication No.146 - Yabbie Aquaculture In Western Australia, March 2024, Department Of Primary Industries And Regional Development, Western Australia

Fisheries occasional publications

Policy relating to the assessment of yabbie aquaculture proposals and principles for assessment

Animal Conservation In St. Louis, Kate O'Sullivan

Undergraduate Research Symposium

St. Louis has a multitude of organizations involved in the natural sciences. But how many of them actually contribute towards animal conservation? The St. Louis Zoo is an organization that focuses a lot of its effort on presentation, so how does that impact the funds that go towards actually saving the animals? I plan to dive into the different animal-based organizations in St. Louis and its surrounding areas, as well as discuss the positives and negatives of each organization. Furthermore, I will provide examples from several sources that I have been reviewing all year to support my claims. I plan …

Complex Dynamics Of Coral Gene Expression Responses To Low Ph Across Species, Veronica Z. Radice, Ana Martinez, Adina Paytan, Donald C. Potts, Daniel J. Barshis

Biological Sciences Faculty Publications

Coral capacity to tolerate low pH affects coral community composition and, ultimately, reef ecosystem function. Low pH submarine discharges (‘Ojo’; Yucatán, México) represent a natural laboratory to study plasticity and acclimatization to low pH in relation to ocean acidification. A previous >2‐year coral transplant experiment to ambient and low pH common garden sites revealed differential survivorship across species and sites, providing a framework to compare mechanistic responses to differential pH exposures. Here, we examined gene expression responses of transplants of three species of reef‐building corals (Porites astreoides, Porites porites and Siderastrea siderea) and their algal endosymbiont communities …

Dataset For: “Shifts In Habitat, Habitat Use, And Demography Of American Lobsters In Coastal Maine Over The Past Quarter Century.”, Robert Jarrett Ii, Damian Brady, Richard Wahle, Robert Steneck

Non-Thesis Student Work

This is the dataset for the manuscript "Shifts in habitat, habitat use, and demography of American lobsters in coastal Maine over the past quarter century." Our study revisited 20 long-term monitored sites at 10 m depth along more than 320 km of the Gulf of Maine. Sampling used quadrat sampling via scuba divers. We recorded fundamental changes in lobster habitat use and distribution. The data include count, size, sex, number of claws, and shelter use of lobster in addition to substrate type, percent cover of kelp and other macroalgae. The data are included in six .csv format files: (1) data …

Landings, Vol. 31, No. 12, Maine Lobstermen’S Community Alliance, Rebecca Nuzzi, Amber-Jean Nickel

Landings: News & Views from Maine's Lobstering Community

Landings content emphasizes science, history, resource sustainability, economic development, and human interest stories related to Maine's lobster industry. The newsletter emphasizes lobstering as a traditional, majority-European American lifeway with an economic and social heritage unique to the coast of Maine. The publication focuses how ongoing research to engage in sustainable, non-harmful, and non-wasteful commercial fishing practices benefit both the fishery and Maine's coastal legacy.

For more information, please visit the Maine Lobstermen’s Community Alliance (MLCA) website.

Culled Lionfish Sexual Maturity Over A Four-Year Timespan​, Christina Bland, Jurgen Hauer, Bilal Saleem, Noelle James

Symposium of Student Scholars

Lionfish are invasive in the Atlantic and the Caribbean. Like many other invasive species, they do not have any natural predators in these areas, so their population can grow unchecked. This can decrease the population of native fish species due to lionfish eating to excess. Because of their impact on native species, resource managers have incentivized lionfish hunting. Hunters were paid $6 USD for every pound of lionfish they brought in, so they possibly favored larger lionfish to increase their reward which would lead to an adaptive advantage for fish of smaller sizes. We hypothesized that the lionfish bounty program …

Draft West Coast Rock Lobster Resource Harvest Strategy, Department Of Primary Industries And Regional Development, Western Australia

Fisheries management papers

Harvest strategies for Western Australia’s (WA) aquatic resources are formal documents developed by the Department of Primary Industries and Regional Development (DPIRD, the Department) to support decision-making processes that ensure the outcomes are consistent with the principles of Ecologically Sustainable Development (ESD; Fletcher 2002a) and Ecosystem Based Fisheries Management (EBFM; Fletcher et al. 2012). Harvest strategies are a key component of all contemporary fishery management systems and a requirement for certification under the Marine Stewardship Council (MSC). The objectives of ESD are reflected in the objectives of the Fish Resources Management Act 1994 (FRMA) and the Aquatic Resources Management Act …

South Coast Offshore Crustacean Resource Of Western Australia Harvest Strategy, Department Of Primary Industries And Regional Development, Western Australia

Fisheries management papers

Harvest strategies for aquatic resources in Western Australia (WA) that are managed by the Department of Primary Industries and Regional Development (DPIRD, the Department) are formal documents that ensures decision-making processes are consistent with the principles of Ecologically Sustainable Development (ESD; Fletcher 2002) and Ecosystem Based Fisheries Management (EBFM; Fletcher et al. 2012). The objectives of ESD are reflected in the objects of the Fish Resources Management Act 1994 (FRMA) and the Aquatic Resources Management Act 2016 (ARMA), which is anticipated replace the FRMA once enacted. At this point, the Fish Resources Management Regulations 1995 (FRMR) is also anticipated to …

Commercial Fishing Identification Guide 2023, Department Of Primary Industries And Regional Development, Western Australia

Fisheries occasional publications

Throughout this guide you will see all or some of the marine bioregion symbols with each fish illustration, indicating where the species is most likely to occur.

This guide has been developed to help you identify the more common species in Western Australia you may encounter. The purpose of this guide is to enhance consistent and accurate species identification.

If you are unsure about a particular species (or if it is not in this guide), please discuss it with a representative of the Department of Primary Industries and Regional Development, Western Australia.

Incorporating Metapopulation Dynamics To Inform Invasive Species Management: Evaluating Bighead And Silver Carp Control Strategies In The Illinois River, Jahn Kallis, Richard Erickson, D. P. Coulter, Alison A. Coulter, Marybeth K. Brey, Matt Catalano, John Dettmers, James Garvey, Kevin Irons, Elizabeth Marschall, Kenneth Rose, Mark Wildhaber, David Glover

Natural Resource Management Faculty Publications

1. Invasive species management can benefit from predictive models that incorporate spatially explicit demographics and dispersal to guide resource allocation decisions.
2. We used invasive bigheaded carps (Hypophthalmichthys spp.) in the Illinois River, USA as a case study to create a spatially explicit model to evaluate the allocation of future management efforts. Specifically, we compared additional harvest (e.g. near the invasion front vs. source populations) and enhanced movement deterrents to meet the management goal of reducing abundance at the invasion front.
3. We found additional harvest in lower river pools (i.e. targeting source populations) more effectively limited population sizes upriver …

The Effect Of Dietary Thiaminase On Cardiac Function And Morphology In Lake Trout (Salvelinus Namaycush), Peter Baker

Electronic Thesis and Dissertation Repository

Thiamine deficiency from the consumption of invasive, high-thiaminase prey fishes is considered to be a major barrier for lake trout restoration in the Great Lakes. In fishes, an understudied aspect of thiamine deficiency is its effect on cardiac function. I examined the effects of dietary thiaminase on cardiac function and morphology in lake trout, specifically as they relate to thermal tolerance. Two hatchery strains of lake trout (Seneca and Slate) were raised on a control or thiaminase diet for nine months. The thiaminase diet was associated with significant ventricle enlargement, impaired cardiac function, and reduced thermal tolerance; these effects were …

Development Of A 16s Reference Library For Edna Metabarcoding The Freshwater Fishes Of Western Ecuador., Hannah M. Willis, Olivia G. Schweikart, Windsor E. Aguirre

DePaul Discoveries

This project examines the use of the 16S locus to amplify neotropical freshwater fishes native to Western Ecuador in a newly created 16S reference library for DNA barcoding and eDNA metabarcoding applications. Among the orders Characiformes, Siluriformes, Cichliformes, Gobiiformes, Cryprinodontiformes, Gymnotiformes, and Perciformes, a compendium of 105 specimens were sequenced, with 43 representing new 16S sequences previously unavailable on Genbank.

Recreational Fishing Location Guide, Department Of Primary Industries And Regional Development, Western Australia

Fisheries occasional publications

This guide has been developed to help you identify the fishing locations that you may visit. The purpose of this guide is to enhance consistent and accurate identification of fishing locations and block numbers within each Bioregion. If you are unsure about a particular location, please discuss it with a representative of the Department of Primary Industries and Regional Development, Western Australia.

Optimizing Strategies To Hydraulically Plant Atlantic Salmon Eggs Based On Fry Dispersal Patterns, Ernest J. Atkinson

Electronic Theses and Dissertations

The Gulf of Maine Distinct Population Segment of Atlantic Salmon has suffered from habitat loss and exploitation over the last century. Hatchery supplementation has prevented the extirpation of the species, but stocking methods represent tradeoffs between survival, domestication, and logistics. Egg planting, the use of eyed embryos, maximizes natural rearing opportunities which can be important for adaptation. This method, however, is logistically demanding and requires significant labor over large spatial, but short temporal, scales dictated by the ontogeny of the fish. However, the survival and dispersal behavior of Atlantic Salmon fry immediately after emergence from eggs planted in artificial nests …

Determination Of Cadmium Uptake In Crassostrea Virginica Shell Under Controlled Conditions, Joseph John Pavelites Ii

<strong> Theses and Dissertations </strong>

The objective of this thesis was to meet growing demand for the development of environmental biomonitors that protect ecosystems and public health. To do this, I determined the potential of oyster shell as a bioindicator of cadmium (Cd) in the environment by determining the mode of Cd uptake and relationships between Cd concentrations in the environment, shell, and soft tissues of juvenile eastern oysters (Crassostrea virginica Gmelin). I performed a review of the literature on the ability of oyster shell to retain metal contaminants and the factors that could affect this process (Chapter 2). I then reared C. virginica …

Assessing The Dynamics Of The Southeast Florida Shark Community From 2013-2019 Via Catch Per Unit Effort And Stable Isotope Analysis, Alexandra Barth

All HCAS Student Capstones, Theses, and Dissertations

Sharks, as well as other top predators, are in drastic decline worldwide. As apex and near-apex predators, species such as nurse, lemon, and tiger sharks maintain balanced marine ecosystems by enacting top-down trophic control. However, this cascading effect is diminished with exploitation via commercial and recreational fishing. Sharks are generally long-lived, mature late, have long reproductive cycles, and produce few offspring. Much remains to be learned about the community structure, population trends and conservation statuses of shark populations worldwide. Comprehensive studies on the composition of the shark community in Southeast Florida north of Miami have been limited. This study assessed …

Benthic Beasts: The Ecological Significance Of Lake Sturgeon And Blue Catfish In Eastern Appalachian Waterways, Stewart Thacker

Research Day

East Tennessee freshwater ecosystems comprise an abundance of an extremely diverse selection of species. This presentation examines Acipenser fulvescens and Ictalurus furcatus, two of the largest freshwater fish in the Appalachian area, which play significant ecological roles within the benthic dimension of our freshwater environments. Commonly known as “bottom-feeders,” Benthivorous species enjoy a broad range of food sources including other fish, detritus, crustaceans, and more. The extensive variety of food consumed by A. fulvescens and I. furcatus permits population control of other, denser, aquatic populations inhabiting other regions of the water column, as well as other organisms included …

Blanding’S Turtle (Emydoidea Blandingii): Species Conservation Assessment, Melissa J. Panella, Colleen Rothe-Groleau

Nebraska Game and Parks Commission: Publications

The primary goal in development of at-risk species conservation assessments is to compile biological and ecological information that may assist conservation practitioners in making decisions regarding the conservation of species of interest. The Nebraska Natural Legacy Project recognizes the Blanding’s turtle (Emydoidea blandingii) as a Tier 1 at-risk species. Some general management recommendations are made here regarding Blanding’s turtles; however, conservation practitioners will need to use professional judgment to make specific management decisions based on objectives, location, and a multitude of variables. This resource was designed to share available knowledge of this at-risk turtle that will aid in the decision-making …

American Eel (Anguilla Rostrata) And Other Fishes As Surveyed By Environmental Dna In The Bronx River And Hudson River Watershed, Sam C. Chin

Dissertations, Theses, and Capstone Projects

Mounting an effective response to the threats faced by freshwater fish may require expansions to aquatic biomonitoring in excess of what is feasible using the capture-based survey techniques currently relied upon by natural resource managers. Methods for analyzing environmental DNA (eDNA) are emerging as a minimally invasive and cost-effective approach for surveying fish and other organisms. By detecting taxon-specific DNA sequences recovered from environmental samples (e.g. water, sediment), eDNA methods are able to infer species presence from samples that can be collected rapidly with simple equipment. In many cases, eDNA detection rates of fish species have been shown to meet …

What Drives Larval Condition For Northern Anchovy (Engraulis Mordax)? Implications For Coastal Pelagic Species Recruitment Fluctuations And Fishery Management Practices, Michelle Robidas

Theses

Discerning the causes of population boom and bust cycles for coastal pelagic species (CPS) has been a major focus of fisheries management research for over a century. Year-class strength is contingent on larval survival and condition, which can be influenced by larval size at age and growth rate. These two factors, in turn, can be affected by maternal investment and environmental variables such as water temperature, salinity, oxygen, and chlorophyll a. We evaluated each of these factors from 127 two to eight week-old Northern Anchovy (Engraulis mordax) larvae off the coast of San Diego to San Francisco, …

Integrating Human Dimensions In Decadal-Scale Prediction For Marine Social Ecological Systems: Lighting The Grey Zone, Jess Melbourne-Thomas, Desiree Tommasi, Marion Gehlen, Eugene J. Murphy, Jennifer Beckensteiner, Francisco Bravo, Tyler D. Eddy, Mibu Fischer, Elizabeth Fulton, Mayya Gogina, Eileen Hofmann, Maya Ito, Sara Mynott, Kelly Ortega-Cisneros, Anna N. Osiecka, Mark R. Payne, Romeo Saldívar-Lucio, Kim J.N. Scherrer

CCPO Publications

The dynamics of marine systems at decadal scales are notoriously hard to predict-hence references to this timescale as the "grey zone" for ocean prediction. Nevertheless, decadal-scale prediction is a rapidly developing field with an increasing number of applications to help guide ocean stewardship and sustainable use of marine environments. Such predictions can provide industry and managers with information more suited to support planning and management over strategic timeframes, as compared to seasonal forecasts or long-term (century-scale) predictions. The most significant advances in capability for decadal-scale prediction over recent years have been for ocean physics and biogeochemistry, with some notable advances …

Diets Of Invasive Channel Catfish Are Subsidized By Invasive Riparian Trees, Christopher A. Cheek, Brandon K. Peoples, Reuben R. Goforth

Natural Resource Management Faculty Publications

Russian olive (Elaeagnus angustifolia) is an invasive, fruit- bearing riparian tree that dominates riparian zones of the San Juan River in the southwestern United States. Previous research in this river suggests olive fruit is common in diets of invasive channel catfish (Ictalurus punctatus), but its energetic importance is unknown (i.e. critical for catfish fitness vs. incidental consumption). We assessed Russian olive consumption in channel catfish diets bimonthly for 1 year, hypothesizing that olive consumption would be greatest during periods of high olive availability and low benthic aquatic invertebrate availability. We found that catfish consumed olive fruit throughout the year and …

Effects Of Oyster Aquaculture On Elasmobranch Abundance And Habitat Use In Humboldt Bay, Ca, Rose Harman

Cal Poly Humboldt theses and projects

Habitat modification from aquaculture can have large effects on natural communities, with the habitat complexity provided by aquaculture structure positively influencing benthic invertebrates and small fish abundance. However, the effects of aquaculture on larger predatory fish like elasmobranchs (i.e., sharks and rays), which use nearshore habitat to forage and provide top-down control of these ecosystems, is largely unknown. Over two years, I deployed baited remote underwater video systems (BRUVS) to examine the effects of oyster aquaculture and environmental variables such as habitat (mudflat or eelgrass), salinity (ppt), turbidity (m), temperature (°C), pH (mV), dissolved oxygen (mg · L^-1), …

Fairy Shrimp (Anostraca) In The Vernal Pools Of Eastern Washington, Megan Garvey

EWU Masters Thesis Collection

Vernal pools are ephemeral wetlands that retain water annually from winter and spring precipitation and snowmelt but are dry the rest of the year. Though important habitats and sources of freshwater biodiversity, they are little accounted for in wetland conservation and restoration practices. Like much of the world’s wetlands, they have seen a significant decline from anthropogenic impacts and conversion for alternative land use. Pools are also at significant risk due to the impacts of climate change and invasive species. These small temporary water bodies perform vital ecosystem services and are host to rare and endemic species. Anostraca, or fairy …

Comparing Fish Species Assemblage Between Impacted And Restored Estuarine Salt Marshes Within The Eel River Estuary, Humboldt Co. Ca, Adam Aguilar, Isaac Basham-Clair, Tristan F. Parkinson, Larkin C. Wells

Cal Poly Humboldt Capstone Honor Roll

This report details a study assessing the fish assemblages of a recently restored estuarine salt marsh site, and a similar unrestored and impacted site along the Eel River estuary. These two sites are located within the Eel River (Wiya’t) estuary, roughly 10 miles west of the city of Fortuna, CA. This study was conducted during the months of September through October 2023. Data collection was done through seine net dragging at randomly selected sample points across both sites. Seine net hauls were recorded by species and species count, which were later computed using a diversity index to provide values representative …

Empirical Valuation Of Primary And Alternative Nursery Habitats For The Blue Crab Callinectes Sapidus In Chesapeake Bay, Alexander C. Hyman

Dissertations, Theses, and Masters Projects

The blue crab (Callinectes sapidus) is a commercially and ecologically importantspecies found along the Atlantic coast of North and South America. These crustaceans play a critical role in coastal ecosystems, serving as both predators and prey in the food web. The blue crab supports a major fishery in Chesapeake Bay, where the species is a cultural icon. Juvenile blue crabs, the smallest and most vulnerable size classes of individuals, are reliant upon structurally complex habitats. Population dynamics of this species are therefore influenced by spatiotemporally fluctuating environmental variables, such as habitat availability. Understanding blue crab ecology is essential for managing …

Measuring The Production Of Migratory Westslope Cutthroat Trout In Tributaries To Priest River, Idaho, Collin J. Hendricks

EWU Masters Thesis Collection

Iteroparous salmonids that exhibit a migratory life history are essential to functioning metapopulations. They are demographically important as migratory females produce more eggs than non-migratory individuals. Additionally, they provide genetic support through gene flow, resulting in more robust, genetically diverse populations. The lower Priest River flows into the Pend Oreille River in the panhandle of northern Idaho and is a system susceptible to degrading conditions due to increasing water temperature. It is also, a significant contributor of migratory Westslope Cutthroat Trout Oncorhynchus clarkii lewisi (WCT) in the Clark- Fork Pend Oreille Basin (CFPOR). The goal of our study was to …

Quantifying Antarctic Krill Connectivity Across The West Antarctic Peninsula And Its Role In Large-Scale Pygoscelis Penguin Population Dynamics, Katherine L. Gallagher, Michael S. Dinniman, Heather J. Lynch

CCPO Publications

Antarctic krill (Euphausia superba) are considered a keystone species for higher trophic level predators along the West Antarctic Peninsula (WAP) during the austral summer. The connectivity of krill may play a critical role in predator biogeography, especially for central-place foragers such as the Pygoscelis spp. penguins that breed along the WAP during the austral summer. Antarctic krill are also heavily fished commercially; therefore, understanding population connectivity of krill is critical to effective management. Here, we used a physical ocean model to examine adult krill connectivity in this region using simulated krill with realistic diel vertical migration behaviors across …

A Preliminary Assessment Of The Spawning Potential Ratio Of Five Target Species Of The Coastal Gillnet Fishery In Guyana And Suriname, Tomas Willems, Elford Liverpool, Michael Hiwat

Gulf and Caribbean Research

Data—limited stock assessment methods have the potential to positively impact livelihoods of fishermen around the world by providing management recommendations that aim to optimize sustainable yields from fisheries. Some years ago, a novel length— based (LB) method was developed for the assessment of spawning potential ratio (SPR), a measure of the reproductive capacity of fish stocks. We applied the LB—SPR method to 5 important target species of the coastal gillnet fishery in Guyana and Suriname. Nebris microps (Smalleye Croaker; 32% SPR) and Macrodon ancylodon (King Weakfish; 34% SPR) had the highest spawning potential, but remained below the 40% target level …

Phytoplankton Community Of Boalia Khal Tributary Of The Halda River, Chattogram, Bangladesh, Md. Shafiqul Islam, M.A. Azadi, Munira Nasiruddin

Journal of Bioresource Management

Boalia Khal is one of the important tributaries of the River Halda. The productivity of the Boalia Khal tributary of the Halda River mainly depends on the phytoplankton diversity. A study was conducted for two years period from January 2017 to December 2018 to identify the phytoplankton community of the Boalia Khal tributary. A total of 61 species of phytoplankton under 37 genera belonging to 8 classes were recorded. The dominant group of phytoplankton was 25 species of Diatoms (40.98 %) followed by 18 species of Green Algae (29.5 %), 9 species of Euglenophytes (14.75 %), 7 species of Blue …