Ecology and Evolutionary Biology Commons^™

Partitioning The Fitness Components Of Rna Populations Evolving In Vitro, Carolina Diaz Arenas, Niles Lehman

Chemistry Faculty Publications and Presentations

All individuals in an evolving population compete for resources, and their performance is measured by a fitness metric. The performance of the individuals is relative to their abilities and to the biotic surroundings – the conditions under which they are competing – and involves many components. Molecules evolving in a test tube can also face complex environments and dynamics, and their fitnessmeasurements should reflect the complexity of various contributing factors as well. Here, the fitnesses of a set of ligase ribozymes evolved by the continuous in vitroevolution system were measured. During these evolution cycles there are three different catalytic …

Effects Of Understory Vegetation And Litter On Plant Nitrogen (N), Phosphorus (P), N∶P Ratio And Their Relationships With Growth Rate Of Indigenous Seedlings In Subtropical Plantations, Jun Wang, Dafeng Hui, Hai Ren, Zhanfeng Liu, Long Yang

Biology Faculty Research

Establishing seedlings in subtropical plantations is very important for forest health, succession and management. Information on seedling nutrient concentrations is essential for both the selection of suitable indigenous tree species to accelerate succession of the established plantation and sustainable forest management. In this study, we investigated the concentrations of nitrogen ([N]), phosphorus ([P]), and N∶P ratio in leaves, stems and roots of seedlings of three indigenous tree species (Castanopsis chinensis, Michelia chapensis and Psychotria rubra) transplanted with removing or retaining understory vegetation and litter at two typical subtropical forest plantations (Eucalyptus plantation and native species plantation). We also measured the …

Assessing The Responses Of Adult, Juvenile, And Larval Fish Assemblages To The Closure Of The Mississippi River Gulf Outlet, An Artificial Tidal Pass In Southeastern Louisiana, Rebecca Weatherall Cope

University of New Orleans Theses and Dissertations

The creation of the Mississippi River Gulf Outlet (MRGO) in 1963 by the U.S. Army Corps of Engineers (USACE) represents one of the most catastrophic, anthropogenic stressors ever to impact the Lake Pontchartrain estuary in southeastern Louisiana, USA. The artificial tidal pass provided a direct route from the Gulf of Mexico to New Orleans. It allowed for high saline waters to enter Lake Pontchartrain, resulting in detrimental changes to the biotic community of the Lake and surrounding wetland areas. In July 2009, the USACE closed the MRGO in hopes of restoring natural ecosystems. This study assesses changes in the adult, …

Statistical And Comparative Phylogeography Of Mexican Freshwater Taxa In Extreme Aquatic Environments, Lyndon M. Coghill

University of New Orleans Theses and Dissertations

Phylogeography aims to understand the processes that underlie the distribution of genetic variation within and among closely related species. Although the means by which this goal might be achieved differ considerably from those that spawned the field some thirty years ago, the foundation and conceptual breakthroughs made by Avise are nonetheless the same and are as relevant today as they were two decades ago. Namely, patterns of neutral genetic variation among individuals carry the signature of a species’ demographic past, and the spatial and temporal environmental heterogeneity across a species’ geographic range can influence patterns of evolutionary change. Aquatic systems …

The Effects Of Salinity, Ph, Temperature, And Dissolved Oxygen On Sensitivity Of Pcr Identification Of T4 Bacteriophage, Joesph F. Cannon, Nicholas A. Thurn, Paul E. Richardson

Journal of the South Carolina Academy of Science

Bacteriophages are used as indicators of pathogenic bacteria in drinking, and wastewaters. They also show potential in limiting aquatic bacterial populations through their lytic properties. The effect of different water characteristics (salinity, pH, dissolved oxygen, and temperature) on the sensitivity of the PCR identification of virus particles were analyzed to determine at what levels bacteriophage can be detected in environmental samples. Results from this preliminary study indicate that a PCR bacteriophage detection technique has potential as a relatively efficient and economical indicator of coliform contamination in multiple aquatic environments. While further evaluation is needed, the protocol appears to function in …

The Influence Of Snowmobile Trails On Coyote Movements During Winter In High-Elevation Landscapes, Eric M. Gese, Jennifer L. Burghardt Dowd, Lise M. Aubry

Wildland Resources Faculty Publications

Competition between sympatric carnivores has long been of interest to ecologists. Increased understanding of these interactions can be useful for conservation planning. Increased snowmobile traffic on public lands and in habitats used by Canada lynx (Lynx canadensis) remains controversial due to the concern of coyote (Canis latrans) use of snowmobile trails and potential competition with lynx. Determining the variables influencing coyote use of snowmobile trails has been a priority for managers attempting to conserve lynx and their critical habitat. During 2 winters in northwest Wyoming, we backtracked coyotes for 265 km to determine how varying snow characteristics influenced coyote movements; …

Conservation In The Context Of Climate Change: Practical Guidelines For Land Protection At Local Scales, Kevin Ruddock, Peter August, Christopher Damon, Charles Labash, Pamela Rubinoff, Donald Robadue Jr.

Peter August

Climate change will affect the composition of plant and animal communities in many habitats and geographic settings. This presents a dilemma for conservation programs – will the portfolio of protected lands we now have achieve a goal of conserving biodiversity in the future when the ecological communities occurring within them change? Climate change will significantly alter many plant communities, but the geophysical underpinnings of these landscapes, such as landform, elevation, soil, and geological properties, will largely remain the same. Studies show that extant landscapes with a diversity of geophysical characteristics support diverse plant and animal communities. Therefore, geophysically diverse landscapes …

Explosive Diversification Following A Benthic To Pelagic Shift In Freshwater Fishes, Phillip R. Hollingsworth Jr., A M. Simons, J A. Fordyce, C D. Hulsey

Faculty Publications and Other Works -- Ecology and Evolutionary Biology

BACKGROUND:

Interspecific divergence along a benthic to pelagic habitat axis is ubiquitous in freshwater fishes inhabiting lentic environments. In this study, we examined the influence of this habitat axis on the macroevolution of a diverse, lotic radiation using mtDNA and nDNA phylogenies for eastern North America's most species-rich freshwater fish clade, the open posterior myodome (OPM) cyprinids. We used ancestral state reconstruction to identify the earliest benthic to pelagic transition in this group and generated fossil-calibrated estimates of when this shift occurred. This transition could have represented evolution into a novel adaptive zone, and therefore, we tested for a period …

Cellular Roles Of Dna Polymerase Beta, Sreerupa Ray, Miriam-Rose Menezes, Ali Senejani, Joann Balazs Sweasy

Biology and Environmental Science Faculty Publications

Since its discovery and purification in 1971, DNA polymerase ß (Pol ߆) is one of the most well-studied DNA polymerases. Pol ß is a key enzyme in the base excision repair (BER) pathway that functions in gap filling DNA synthesis subsequent to the excision of damaged DNA bases. A major focus of our studies is on the cellular roles of Pol ß. We have shown that germline and tumor-associated variants of Pol ß catalyze aberrant BER that leads to genomic instability and cellular transformation. Our studies suggest that Pol ß is critical for the maintenance of genomic stability and that …

Soil Development And Vegetation Response To Removal Of A Small Dam, Lassen Volcanic National Park, California, Stephanie Kay Rohdy

Dissertations and Theses

Dam removal is increasing as dams age, yet little is understood about the pedogenic response to dam removal. This study reports on the edaphic changes of reservoir sediments and vegetation cover one year following removal of a small earthen dam in Northern California. In August 2012, I sampled surface sediments from the former Dream Lake reservoir in Lassen Volcanic National Park, and compared their physical and chemical properties with soil samples from two reference sites. I also estimated percent cover of vegetation in the former reservoir and reference sites. My results show that the reservoir was under reduced conditions, as …

Biology Department Receives Grant To Assess Juvenile Horseshoe Crab Populations In Long Island Sound, Jennifer Mattei

Jennifer Mattei

No abstract provided.

Biology Department Receives Grant To Assess Juvenile Horseshoe Crab Populations In Long Island Sound, Mark Beekey

Mark Beekey

No abstract provided.

Predicting Invasion Risk Of Non-Native Plants Using A Modified I-Rank Assessment, Justin B. Williams

School of Natural Resources: Dissertations, Theses, and Student Research

Biological invasions are a global problem responsible for native species declines worldwide. Understanding the invasion risk from non-native species is important in establishing management goals and making decisions for managing native ecosystems. Useful modeling methods for quantifying or predicting invasion risk should consider research needs, data availability, and operate at an appropriate scale. I evaluated risk assessment methods towards answering a specific research question; which plant species pose the greatest risk of becoming invasive or having the greatest negative impact in Nebraska? I selected the I-Rank assessment method, which consists of 20 questions grouped into four risk categories or Subranks: …

A Population Model For Walleye In Nebraska Irrigation Reservoirs, Robert A. Kill

School of Natural Resources: Dissertations, Theses, and Student Research

Understanding how and why fish population size changes between years is a central theme in fisheries ecology. Fishery agencies have limited time and financial resources, thus there is a need for a quantitative way to direct the limited time and financial resources so agencies can manage fisheries more efficiently. I developed a tool for fishery managers that synthesizes common population indices and evaluated the relative importance of those indices given varying uncertainty in age-0 walleye Sander vitreus survival. Under most circumstances, I determined that resources are best utilized in reducing age-0 survival uncertainty when understanding walleye population growth. I applied …

Anoxia Tolerance Of Forensically Important Calliphorids, Melissa M. Lein

School of Natural Resources: Dissertations, Theses, and Student Research

Forensically important blow flies, Diptera: Calliphoridae, are among the first organisms to colonize carrion. After eggs hatch, the larvae of most blow fly species feed in an aggregation or “mass.” While in this mass larvae may experience periods of no oxygen (anoxia), little oxygen (hypoxia), or normal oxygen (normoxia), but the tolerance of blow fly larvae to severe hypoxic conditions is not known. I tested the anoxia tolerance of four species of calliphorids (Calliphora vicina, Cochliomyia macellaria, Lucilia sericata, and Phormia regina), using third stage larvae across five temperatures. Experiments were conducted by exposing larvae to pure nitrogen …

Evaluation Of Three Nest Searching Methods For Ring-Necked Pheasant, Jeffery W. Stackhouse, Kevin K. Sedivec, Benjamin A. Geaumont

The Prairie Naturalist

Ring-necked pheasant (Phasianus colchicus) are a highly sought after game bird and as such, much research has been conducted regarding their ecology (Warner 1981, Trautman 1982, Johnson and Knue 1989). Perhaps the most investigated aspect of pheasant ecology is the species’ reproductive season (e.g. Linder et al. 1960, Dumke and Pils 1979, Leif 1994) with many studies focusing on nesting habitat (Baskett 1947, Clark et al. 1999). Results from previous research have acknowledged the difficulty associated with locating pheasant nests in their preferred cover types (Hanson 1970, Evrard 2000). Studies of pheasant nesting ecology have been based on …

Dual Capture Of A Piñon Deer Mouse And A Silky Pocket Mouse Resulting In Consumption Of The Smaller Animal, Jon C. Pigage, Roger D. Peyton

The Prairie Naturalist

Intraspecific dual captures of rodents are uncommon, but not rare. There are several reports of brown rats (Rattus norvegicus), white-footed deer mice (Peromyscus leucopus), North American deer mice (P. maniculatus), western harvest mice (Reithrodontomys megalotis) and meadow voles (Microtus pennsylvanicus) caught simultaneously in the same trap (i.e. a door-closing live-trap; Davis 1955, Getz 1961, Blaustein and Rothstein 1978, Jenkins and Llewellyn 1981, Novak 1983). Some reports are incidental whereas others are interpreted as social associations or bonding between conspecifics. Interspecific dual captures are rarely reported in the literature. The earliest report of …

Red-Tailed Hawk Nesting In Kansas: Influence Of Landscape Characteristics, William Langley

The Prairie Naturalist

Factors that affect nest site selection in red-tailed hawks (Buteo jamaicensis) include the physical features surrounding the nest and landscape characteristics. Features surrounding nests include: tree height, tree diameter (dbh), percent canopy cover, slope, nest openness, and density of woody plants or shrubs (Titus and Mosher 1981, Bechard et al. 1990, Tietje et al. 1997, Actkinson et al. 2007). Landscape characteristics that influence nest-site selection by red-tailed hawks vary across regions. In Georgia, red-tailed hawks selected nest site in areas with greater area of agriculture and open pasture (Moorman and Chapman 1996), whereas in Oklahoma prairies, the hawks …

Associations Between Iron Concentration And Productivity In Montane Streams Of The Black Hills, South Dakota, Cari-Ann Hayer, Benjamin M. Holocmb, Steven R. Chipps

The Prairie Naturalist

Iron is an important micronutrient found in aquatic systems that can influence nutrient availability (e.g. phosphorus) and primary productivity. In streams, high iron concentrations often are associated with low pH as a result of acid mine drainage, which is known to affect fish and invertebrate communities. Streams in the Black Hills of South Dakota are generally circumneutral in pH, yet select streams exhibit high iron concentrations associated with natural iron deposits. In this study, we examined relationships among iron concentration, periphyton biomass, macroinvertebrate abundance, and fish assemblages in four Black Hills streams. The stream with the highest iron concentration (~5 …

Use Of Seeded Exotic Grasslands By Wintering Birds, Andrew D. George, Timothy J. O'Connell, Karen R. Hickman, David M. Lesliee Jr.

The Prairie Naturalist

Despite widespread population declines of North American grassland birds, effects of anthropogenic disturbance on wintering habitat of this guild remain poorly understood. We compared avian abundance and habitat structure in fields planted to the exotic grass Old World bluestem (Bothriochloa ischaemum; OWB) to that in native mixed-grass prairie. During winters of 2007–2008 and 2008–2009, we conducted bird and vegetation surveys in six native grass and six OWB fields in Garfield, Grant, and Alfalfa counties, Oklahoma. We recorded 24 species of wintering birds in native fields and 14 species in OWB monocultures. While vegetation structure was similar between field …

How Important Is A Quality Manuscript Review?, Christopher N. Jacques

The Prairie Naturalist

Temperatures are finally starting to cool a bit (for those of us in the northern Great Plains region) and Thanksgiving break is just around the corner.

I offer my reflections in the spirit of encouraging each of you to take a break from your professional obligations and spend time with friends and family enjoying nature and everything it has to offer this fall.

Salamander Colonization Of Chase Lake, Stutsman County, North Dakota, David M. Mushet, Kyle I. Mclean, Craig A. Stockwell

The Prairie Naturalist

Salt concentrations in lakes are dynamic. In the western United States, water diversions have caused significant declines in lake levels resulting in increased salinity, placing many aquatic species at risk (Galat and Robinson 1983, Beutel et al. 2001). Severe droughts can have similar effects on salt concentrations and aquatic communities (Swanson et al. 2003). Conversely, large inputs of water can dilute salt concentrations and contribute to community shifts (Euliss et al. 2004).

Chase Lake is a large, shallow, alkaline lake in east-central North Dakota most famously known for supporting one of the largest breeding colonies of the American white pelican …

A Simple Device For Measuring The Minimum Current Velocity To Maintain Semi-Buoyant Fish Eggs In Suspension, Julias S. Mueller, Brandon D. Cheek, Qingman Chen, Jillian Groeschel, Shannok K. Brewer, Timothy B. Grabowski

The Prairie Naturalist

Pelagic broadcast spawning cyprinids are common to Great Plains rivers and streams. This reproductive guild produces non-adhesive semi-buoyant eggs that require sufficient current velocity to remain in suspension during development. Although studies have shown that there may be a minimum velocity needed to keep the eggs in suspension, this velocity has not been estimated directly nor has the influence of physicochemical factors on egg buoyancy been determined. We developed a simple, inexpensive flow chamber that allowed for evaluation of minimum current velocity needed to keep semi-buoyant eggs in suspension at any time frame during egg development. The device described here …

Wood Decomposition In A Warmer World, Emily Elizabeth Austin

Doctoral Dissertations

Climatic warming is altering species distributions and ecosystem functions across the globe. Wood is an important carbon pool and the fungal communities in wood are relatively simple compared to those in soil. These factors make decomposing wood an ideal system for exploring the influence of decomposer community on the response of decomposition to warming. My research has focused on the effects of warming wood decomposition rates and wood decomposing communities. Using field and lab- based manipulative experiments and field observations I explore the influence of tree species, wood decomposition stage, geography and warming on fungal community structure and activity. In …

Census And Mapping Of Chorro Creek Bog Thistle In Reservoir Canyon, San Luis Obispo, Ca, Tyler Michael Lutz

Biological Sciences

Chorro Creek bog thistle (Cirsium fontinale var. obispoense) is a federally endangered variety of Fountain thistle endemic to western San Luis Obispo County. The U.S. Fish and Wildlife Service knows of nineteen populations, many with multiple colonies. A population was discovered in the Reservoir Canyon Natural Reserve in 2001, but has not been monitored or described since the time of its discovery. In fall of 2013, a census of the population was performed, the four colonies were mapped, and a floristic survey was conducted. A field experiment was initiated to determine if reducing the riparian canopy coverage can …

Sources Of Variability In Agronomic Weed Seed Predation: Time, Space, Habitat, And Hyperpredation, Sonja K. Birthisel

Electronic Theses and Dissertations

Weed seed predation is an ecosystem service that benefits farmers by decreasing seedbank inputs, thereby reducing weed pressure in subsequent growing seasons. Seed predation can be considerable, but is highly variable. Sources of variability may include time, space, habitat, and trophic interactions such as hyperpredation. Two experiments were conducted to measure the impacts of these sources of variability on weed seed predation rates in Maine mixed vegetable agroecosystems.

Chapter One of this thesis describes a series of landscape-level field experiments conducted to quantify the effects of time, space, and habitat on seed predation rates. Seed assays, with and without vertebrate …

Homing Behavior In Response To Displacement And Orientation Of The Northern Diamondback Terrapin (Malaclemys Terrapin Terrapin) In Barnegat Bay, New Jersey, Nicole M. Lainhart

Biology Theses

Increasing urbanization of the Barnegat Bayestuary in New Jersey has subjected northern diamondback terrapins to substantial habitat loss. Understanding whether terrapins have homing behavior, and determining the types of orientation cues they use to aid in this behavior, is important for conservation management. To test their homing behavior, nine non-gravid female terrapins were outfitted with biotelemetry tracking devices and data loggers and were displaced 4 km north and/or south. Eight of nine terrapins successfully returned home; the one terrapin that did not return home was inadvertently captured in a crab pot. Urbanization and shoreline development of the north displacement location …

Development And Application Of A Gis-Based Long Island Sound Eelgrass Habitat Suitability Index Model, Jamie M.P. Vaudrey, Justin Eddings, Christopher Pickerell, Lorne Brousseau, Charles Yarish

Department of Marine Sciences

The primary objectives of the Eelgrass Habitat Suitability Index Model (EHSI Model) are to assist in the evaluation of sites being considered for eelgrass restoration efforts in the Long Island Sound (LIS) area and to identify areas where water quality issues reduce or eliminate the potential for natural eelgrass colonization. To achieve this goal, geospatial processing of data available from the Long Island Sound area was conducted using ArcGIS v10.0 including the 3D Analyst and Spatial Analyst extensions. The result is a series of maps presented in this report and a GIS-based model available for users to interact with the …

Determining Parentage And The Effects Of Relatedness On Play Partner Preference In Belding's Ground Squirrels, Jessica Weidenbach

Master's Theses

I investigated 1) multiple paternity in Belding’s ground squirrels (Urocitellus beldingi) and 2) social partner preferences in juvenile U. beldingi. Prior work with blood allozymes demonstrated multiple paternity in U. beldingi litters. I evaluated paternity using microsatellite DNA analysis, which is more accurate than examining blood allozymes. My results indicate that multiple paternity in U. beldingi is more extensive than previously shown, occurring in about 90% of litters with more than one juvenile, and averaging 2.95 fathers in multiply sired litters. I also evaluated the hypothesis that play and other social behavior promotes bonding among juvenile female …

Photo-Identification Methods Reveal Seasonal And Long-Term Site-Fidelity Of Risso’S Dolphins (Grampus Griseus) In Shallow Waters (Cardigan Bay, Wales), Marijke N. De Boer, Josephine Clark, Mardik F. Leopold, Mark P. Simmonds, Peter J.H. Reijnders

Ecology Collection

A photo-identification study on Risso’s dolphins was carried out off Bardsey Island in Wales (July to September, 1997-2007). Their local abundance was estimated using two different analytical techniques: 1) mark-recapture of well-marked dolphins using a “closed-population” model; and 2) a census technique based on the total number of iden-tified individual dolphins sighted over the study period. The mark-recapture estimates of 121 (left sides; 64 - 178, 95% CI; CV 0.24) and 145 dolphins (right sides; 78 - 213, 95% CI; CV 0.24) closely matched the census technique estimates (population size of 90 - 151). It was found that the dolphins …