Ecology and Evolutionary Biology Commons^™

Evolution In The Deep Sea: Scales And Mechanisms Of Population Divergence, Amanda E. Glazier

Graduate Doctoral Dissertations

The deep sea is the Earth’s largest ecosystem and harbors a unique and largely endemic fauna. Although most research has focused on the ecological mechanisms that allow coexistence, recent studies have begun to investigate how this remarkable fauna evolved.. My work quantifies geographic patterns of genetic variation and investigates potential mechanisms that shape evolution in the deep ocean.

Bathymetric genetic divergence is common in the deep sea with population structure typically decreasing with depth. The evolutionary mechanisms that underlie these patterns are poorly understood. Geographic patterns of genetic variation indicated that the protobranch bivalve Neilonella salicensis was composed of two …

Evolutionary Dynamics Of Tree Invasions: Complementing The Unified Framework For Biological Invasions, Rafael D. Zenni, Ian A. Dickie, Michael J. Wingfield, Heidi Hirsch, Casparus J. Crous, Laura A. Meyerson, Treena I. Burgess, Thalita G. Zimmermann, Metha M. Klock, Evan Siemann, Alexandra Erfmeier, Roxana Aragon, Lia Montti, Johannes J. Le Roux

Faculty Publications, Environmental Studies

Evolutionary processes greatly impact the outcomes of biological invasions. An extensive body of research suggests that invasive populations often undergo phenotypic and ecological divergence from their native sources. Evolution also operates at different and distinct stages during the invasion process. Thus, it is important to incorporate evolutionary change into frameworks of biological invasions because it allows us to conceptualize how these processes may facilitate or hinder invasion success. Here, we review such processes, with an emphasis on tree invasions, and place them in the context of the unified framework for biological invasions. The processes and mechanisms described are pre-introduction evolutionary …

Reef Society And The Tyranny Of Data, Robert Wintner

Animal Sentience

Modern science now approaches divergent processes in many areas, including health assessments of marine eco-systems and social aspects of marine species. Scientific data have long enjoyed a reputation for objectivity but incidents of science-for-hire, data spinning/skewing and political jading are more frequent than ever. In the field of reef creature sensitivity, technical treatises can “logically” explain away what a person of average education can clearly observe on any given reef. Western medicine discounted anecdotal evidence of any cure outside the 4% margin of error until those cures demanded attention and in some cases application. Modern science must now enter an …

Still Wondering How Flesh Can Feel, Gwen J. Broude

Animal Sentience

Reber believes he has simplified Chalmers’s “hard problem” of consciousness by arguing that subjectivity is an inherent feature of biological forms. His argument rests on the related notions of continuity of mind and gradual accretion of capacities across evolutionary time. These notions need to be defended, not just asserted. Because Reber minimizes the differences in mental faculties among species across evolutionary time, it becomes easier to assert, and perhaps believe, that sentience is already present in early biological forms. The more explicit we are about the differences among these mental faculties and the differences across species, the less persuasive is …

Population Density, Habitat Dynamic And Aerial Survival Of Relict Cave Bivalves From Genus Congeria In The Dinaric Karst, Olga Jovanović Glavaš, Branko Jalžić, Helena Bilandžija

International Journal of Speleology

Caves are some of the least-known ecosystems on Earth and long-term ecological studies and population size estimates are very rare. Genus Congeria is a Tertiary relict that comprises three species from Dinaric karst area; C. kusceri, C. jalzici and C. mulaomerovici, each with very limited distribution. They are the only known cave bivalves and in contrast to many other cave species, they form populations with high densities. We estimated that the population of C. kusceri in Jama u Predolcu is between 72,454 and 72,906 individuals. The highest density occurred between one and three meters depth, and reached maximum …

A Machine Learning Approach For Using The Postmortem Skin Microbiome To Estimate The Postmortem Interval, Hunter R. Johnson, Donovan D. Trinidad, Stephania Guzman, Zenab Khan, James V. Parziale, Jennifer M. Debruyn, Nathan H. Lents

Publications and Research

Research on the human microbiome, the microbiota that live in, on, and around the human person, has revolutionized our understanding of the complex interactions between microbial life and human health and disease. The microbiome may also provide a valuable tool in forensic death investigations by helping to reveal the postmortem interval (PMI) of a decedent that is discovered after an unknown amount of time since death. Current methods of estimating PMI for cadavers discovered in uncontrolled, unstudied environments have substantial limitations, some of which may be overcome through the use of microbial indicators. In this project, we sampled the microbiomes …

Can Functional Traits Predict Plant Community Response To Global Change?, Sarah Kimball, Jennifer L. Funk, Marko J. Spasojevic, Katharine N. Suding, Scot Parker, Michael K. Goulden

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

One primary goal at the intersection of community ecology and global change biology is to identify functional traits that are useful for predicting plant community response to global change. We used observations of community composition from a long-term field experiment in two adjacent plant communities (grassland and coastal sage shrub) to investigate how nine key plant functional traits were related to altered water and nitrogen availability following fire. We asked whether the functional responses of species found in more than one community type were context dependent and whether community-weighted mean and functional diversity were significantly altered by water and nitrogen …

Can Functional Traits Predict Plant Community Response To Global Change?, Sarah Kimball, Jennifer L. Funk, Marko J. Spasojevic, Katharine N. Suding, Scot Parker, Michael K. Goulden

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

One primary goal at the intersection of community ecology and global change biology is to identify functional traits that are useful for predicting plant community response to global change. We used observations of community composition from a long-term field experiment in two adjacent plant communities (grassland and coastal sage shrub) to investigate how nine key plant functional traits were related to altered water and nitrogen availability following fire. We asked whether the functional responses of species found in more than one community type were context dependent and whether community-weighted mean and functional diversity were significantly altered by water and nitrogen …

Impacts Of Long-Term Precipitation Manipulation On Hydraulic Architecture, Xylem Function, And Canopy Status In A Piñon-Juniper Woodland, Patrick J. Hudson

Biology ETDs

The Southwestern US is predicted to become hotter and drier, as global climate change forces increasing temperatures and variability in timing and size of precipitation inputs. Drought stress has become more frequent in recent decades, and resulted in massive forest mortality in piñon-juniper woodlands. During recent severe droughts (2000-2003, 2009-2012), piñon pine (Pinus edulis Englem.) suffered disproportionately high mortality compared to co-occurring one-seed juniper (Juniperus monosperma [Engelm.] Sarg.). A large-scale precipitation manipulation experiment was established in a piñon-juniper woodland in central New Mexico to test hypotheses regarding tree survival and mortality with respect to altered water regimes. Our …

Integrating Habitat Suitability Modeling And Radio Telemetry To Describe Habitat Use Of The Western Massasaugas, Sistrurus T. Tergeminus, In Texas, Mitchell R. Barazowski

Biology Theses

Habitat suitability modeling using the software package MaxEnt (Phillips, Anderson, & Schapire, 2006) is a popular method for describing the habitat of rare species. MaxEnt uses “presence only” data to develop models; however presence data are highly skewed towards areas of high detection probability and these areas may not represent the full range of habitat use. Thusly, predictions from models developed using only data from areas with high detection probability may not represent all suitable habitat. This study tested the ability of MaxEnt models developed using three different data sets to accurately describe Western Massasauga (Sistrurus t. tergeminus) habitat at …

Territoriality And Spatial Structure In The Green Anole, Anolis Carolinensis, William D. Weber Jr.

LSU New Orleans Theses and Dissertations

Anolis carolinensis has been a model organism for ecology and evolutionary biology since the seventies, yet there are still understudied aspects of their ecology. A five-year study has provided microsatellite genotypes to be used in building a pedigree and assess relatedness, enabling us to evaluate the spatial distribution of an urban population of A. carolinensis. Results indicate no correlation between a male’s size and the distance others keep from it; however, males belonging in the heavyweight morph are dictating the spatial distribution in this population. In addition, juvenile dispersal of male offspring and partial philopatry of female offspring are …

Variation In Female Mating Behavior And Success In The Damselfly, Calopteryx Maculata, Suzanne E. Allison

Masters Theses, 2010-2019

Traditionally, the study of sexual selection has focused on the evolution of elaborate male traits and how they enhance the ability to out-compete other males directly (access to females) and indirectly (access to desirable territories or resources). Female trait studies have focused most on evolved preferences for male traits. While we know much about how sexual selection acts on males, there is a deficit of equivalent study on females. In insects, including damselflies, male size and pigmentation are positively correlated with fat reserves and immune abilities, and therefore with male competitive ability. Here, we show that phenotypic variation that has …

Vertical Movement Of The Endangered James Spinymussel (Pleurobema Collina) And The Notched Rainbow Mussel (Villosa Constricta) In Response To Floods At Different Temperatures And Substrates: Implications For Conservation And Management, Dorottya Boisen

Masters Theses, 2010-2019

Freshwater mussels are keystone species in their ecosystems, improving water and substrate quality for other organisms while they are alive, and buffering stream pH and providing shelter with their shells after they die. Approximately 70% of all freshwater mussel species are endangered globally. The James Spinymussel (Pleurobema collina) is a critically endangered species that lives in disparate tributaries of the James River of Virginia. Like other freshwater mussels, they have a cryptic appearance and behavior, making them difficult to find and therefore, to study and conserve. Previous studies indicate a higher percentage of mussels are surfaced during their …

Phylogenetics, Biogeography, And Climate Niche Variation Of South Pacific And Hawaiian Psychotria, Elaine Zhang

Master's Theses

Why do some species have broad geographic distributions, while other species are confined to a narrow distribution? Species age, ecological niche, or dispersal traits may help explain why some insular species are abundant and found on many islands, while others are rare and restricted to one island. In this study, I inferred a robust, time-calibrated phylogeny of the Hawaiian Psychotria, using two nuclear and eight chloroplast loci, sampling 67 individuals. I coupled my phylogenetic hypothesis with climatic data, ecological niche modeling, and morphological dispersal characteristics to explain the variation in number of islands occupied by each species. My inferred phylogeny …

Why We Still Need To Worry About Bees, Meaghan Lee Callaghan

Capstones

American honey bees, and other native bee species, are still in decline, though the specter of colony collapse disorder may be fading behind us. Colony decline, the loss of bees overwinter experienced across the country at a quarter to third lost per hive (sometimes more), is now expected. Losses can include those from colony collapse disorder. The author discusses the different causes for colony decline and speaks to bee health scientists and local beekeepers. Read more at: http://www.meaghanleecallaghan.com/capstone/index.html

Flight Of The Freshwater Fish, Michael H. Wilson

Capstones

Michael H. Wilson

Capstone Abstract

December 27, 2016

Flight of the Freshwater Fish

The Hudson River provides for millions of people as a path for commercial and private transportation, a source of food and energy, and perhaps most importantly for many living in the tri-state area as a destination for recreation and relaxation. The most overlooked feature of the river is how the wildlife shows clear signs of a changing climate and rapid environmental response to the impacts of global warming on the river.

Entire populations of fish species in the lower Hudson have been forced to leave the river …

Changes In Male Hunting Returns, Raymond B. Hames

Department of Anthropology: Faculty Publications

Research on changes in male hunting among hunter-gatherers addresses two important issues in early human evolution: the nature of the family and trade-offs in mating and parenting effort as well as the development of embodied capital. In the hunter-gatherer literature, there is a debate about the function of male hunting that has implications for understanding the role males play in the evolution of the pair bond. The traditional model argues that male hunting and other economic activities are forms of male provisioning or parenting effort designed to enhance a man’s fitness through his wife’s reproduction and the survivorship of their …

The Influence Of The Invasive Chinese Tallow (Triadica Sebifera) Leaf Litter On Aquatic Chemistry And Microbial Community Composition, Raymond D. Montez

Electronic Theses and Dissertations

Global climate change and anthropogenic activity have facilitated the movement and invasive potential of nonnative plants in native environments. These invasions can have negative effects on ecosystem diversity and function. The nonnative and invasive plant, Chinese Tallow (Triadica sebifera), has already invaded much of the south eastern US where it is outcompeting native tree species and changing ecosystem diversity in a variety of habitats. Leaf litter from the Chinese tallow has been shown cause changes in dissolved oxygen and pH in the aquatic environment. Turbidity is also affected when Chinese tallow litter is present in water. A series of …

Assessing The Climate Change Vulnerability Of Ecosystem Types Of The Southwestern U.S., Francis J. Triepke, Esteban H. Muldavin, Maximillian M. Wahlberg, Timothy K. Lowrey, Donald A. Falk, Megan M. Friggens, Karen E. Bagne

Biology ETDs

Climate change is challenging scientists and decision-makers to understand the complexities of climate change and to predict the related effects at scales relevant to environmental policy and the management of ecosystem services. Extraordinary change in climate, and the ensuing impacts to ecosystem services, are widely anticipated for the southwestern United States. Predicting the vulnerability of Southwest ecosystems and their components has been a priority of natural resource organizations over the past decade. Supplementing vulnerability assessments in the region with geospatial inputs of high thematic and spatial detail has become vital for supporting local analyses, planning, and decisions. In this context …

Salvinia Molesta: An Assessment Of The Effects And Methods Of Eradication, Arti Lal

Master's Projects and Capstones

Salvinia molesta is an invasive aquatic fern. It is now the second worse aquatic invader in the world. Since the 1930s, it has invaded most tropical and some temperate countries. S. molesta plants grow vegetatively and can increase in size rapidly. S. molesta can form thick mats of up to 1-meter-thick. There are a number of ways these thick mats negatively affect the environment: 1) reduce light to benthic organisms, 2) reduce oxygen in the water column for other organisms, 3) accumulate as organic matter at the bottom of the water column, 4) decrease nutrients for other organisms, and 5) …

Review Of Northwestern African Buthacus, With Description Of Buthacus Stockmanni Sp. N. From Morocco And Western Sahara (Scorpiones, Buthidae), František Kovařík, Graeme Lowe, František Šťáhlavský

Euscorpius

Northwestern African Buthacus species are revised. Buthacus stockmanni sp. n. from Morocco and Western Sahara is described and fully complemented with color photos of live and preserved specimens, as well as their habitat. The hemispermatophore of B. stockmanni sp. n. is illustrated and described. In addition to morphology and hemi-spermatophores, we also describe the karyotypes of B. stockmanni sp. n. (2n=20). B. stockmanni sp. n. is compared with B. occidentalis Vachon, 1953 and B. ziegleri Lourenço, 2000. Both these species are differentiated from B. stockmanni sp. n. geographically and morphologically. The male of B. stockmanni sp. n. has fingers of …

First Report Of Lissothus Occidentalis Vachon, 1950 (Scorpiones: Buthidae) From Morocco And Western Sahara, With Notes On Ecology And Captive Breeding, Mark Stockmann, Carlos Turiel, Felix Althoff, Graeme Lowe, František Kovařík

Euscorpius

Genus Lissothus Vachon, 1948 represented by L. occidentalis Vachon, 1950 is reported for the first time from four localities in Morocco and the Western Sahara. We provide a revised diagnosis of L. occidentalis, fully complemented with color photos of live and preserved specimens. Hemispermatophore is also illustrated and described in detail. Furthermore, we describe aspects of the ecology of this species, and provide photos of collection sites and habitats. We also report on the reproductive biology of this species based on captive breeding and rearing. and provide the first envenomation report for the species.

Animals Aren’T Persons, But Is It Time For A Neologism?, Helen Steward

Animal Sentience

Mark Rowlands argues that at least some animals are persons, based on the idea that (i) many animals have a property he calls “pre-reflective awareness,” (ii) the capacity for pre-reflective awareness is sufficient to satisfy the traditional Lockean definition of personhood, and (iii) satisfaction of the traditional Lockean definition of personhood is sufficient for being a person. I agree with (i) and can see that there is a persuasive case for (ii), but I think the case against (iii) blocks the conclusion that animals are persons. I suggest that we may need instead to coin a neologism in order to …

Towards Quantitative Viromics For Both Double-Stranded And Single-Stranded Dna Viruses., Simon Roux, Natalie E Solonenko, Vinh T Dang, Bonnie T Poulos, Sarah M Schwenck, Dawn B Goldsmith, Maureen L Coleman, Mya Breitbart, Matthew B Sullivan

Marine Science Faculty Publications

BACKGROUND: Viruses strongly influence microbial population dynamics and ecosystem functions. However, our ability to quantitatively evaluate those viral impacts is limited to the few cultivated viruses and double-stranded DNA (dsDNA) viral genomes captured in quantitative viral metagenomes (viromes). This leaves the ecology of non-dsDNA viruses nearly unknown, including single-stranded DNA (ssDNA) viruses that have been frequently observed in viromes, but not quantified due to amplification biases in sequencing library preparations (Multiple Displacement Amplification, Linker Amplification or Tagmentation).

METHODS: Here we designed mock viral communities including both ssDNA and dsDNA viruses to evaluate the capability of a sequencing library preparation …

Lilliput Effect Dynamics Across The Cretaceous-Paleogene Mass Extinction: Approaches, Prevalence, And Mechanisms, Matthew Brett Jarrett

USF Tampa Graduate Theses and Dissertations

An organism's body size entails both physiological and ecological costs. Furthermore, as a parameter in analyzing organisms, it represents a fundamental and essential morphometric character. Reductions in size following mass extinction is a commonly observed phenomenon in the fossil record. This study examines the evolutionary significance of this phenomenon termed the: 'Lilliput Effect' by proposing that it represents a rapid evolutionary response to altered selection pressures during a mass extinction. This primary hypothesis is evaluated against two additional hypotheses of size reduction: 1) stunted growth as a response to stressed ecosystems, and/or 2) mass extinctions are size selective.

These hypotheses …

Sea Surface Temperature Rises Shift Migration Patterns Due To Ecosystem Changes, Alexia Skrbic, Hesham El-Askary

Student Scholar Symposium Abstracts and Posters

The continuing climate change is negatively impacting ecosystems, specifically oceans which are declining and food webs are being altered by the increase of greenhouse gases. The increase of the carbon dioxide and other greenhouse gases is increasing sea surface temperature of the world’s oceans. Certain organisms lower on the food chain like phytoplankton and zooplankton are directly affected by the warming which alters how they process nutrients and their productivity. The limited amount of these primary producers in the oceans and specifically the location they inhabit directly affects all the organisms above them on the food chain. Several marine animals …

Comparative Phylogeography In The Atlantic Forest And Brazilian Savannas: Pleistocene Fluctuations And Dispersal Shape Spatial Patterns In Two Bumblebees, Elaine Françoso, Alexander Rizzo Zuntini, Ana Carolina Carnaval, Maria Cristina Arias

Publications and Research

Background: Bombus morio and B. pauloensis are sympatric widespread bumblebee species that occupy two major Brazilian biomes, the Atlantic forest and the savannas of the Cerrado. Differences in dispersion capacity, which is greater in B. morio, likely influence their phylogeographic patterns. This study asks which processes best explain the patterns of genetic variation observed in B. morio and B. pauloensis, shedding light on the phenomena that shaped the range of local populations and the spatial distribution of intra-specific lineages.

Results: Results suggest that Pleistocene climatic oscillations directly influenced the population structure of both species. Correlative species distribution models predict that …

Reber’S Caterpillar Offers No Help, Carl Safina

Animal Sentience

Reber’s target article “Caterpillars, consciousness and the origins of mind” seems only to shift but not to address the question of where the mind is and how minds occur.

Effect Of Diet On Mortality And Larval Duration In Chrysodeixis Includens (Lepidoptera: Noctuidae), Andrea Przygoda, Erin E. Barding, Margaret Smith

Georgia Journal of Science

Diet mediates many life history trade-offs and therefore is an important environmental component to consider. Because some organisms share food sources with humans, they encounter anthropogenic changes to their diet, such as genetically modified crops and chemical applications, which can contribute to additional complexity in their environment. To understand the effect of diet on the life history of the soybean looper, Chrysodeixis includens, we exposed larvae to several different food sources, including genetically modified soybean leaves and the pesticide spinosad. Significant differences in larval instar duration and timing of larval mortality among treatments were observed indicating that type of diet …

The Vertical And Horizontal Distribution Of Deep-Sea Crustaceans Of The Order Euphausiacea (Malacostraca: Eucarida) From The Northern Gulf Of Mexico With Notes On Reproductive Seasonality., Charles Douglas Fine

HCNSO Student Theses and Dissertations

The vertical and horizontal distributions of Euphausiacea in the northern Gulf of Mexico, including the location of the Deepwater Horizon oil spill, were analyzed from 340 trawl samples collected between April-June, 2011. This study is the first comprehensive survey of euphausiid distributions from depths deeper than 1000 m in the Gulf of Mexico and included stratified sampling from five discrete depth ranges (0-200 m, 200-600 m, 600-1000 m, 1000-1200 m, and 1200-1500 m). In addition, this study encompasses the region heavily impacted by the Deepwater Horizon oil spill. Data presented here could potentially be used in ecosystem models investigating trophic …