Ecology and Evolutionary Biology Commons^™

An Optimal Lysis Time Maximizes Bacteriophage Fitness In Quasi-Continuous Culture, Sherin Kannoly, Abhyudai Singh, John J. Dennehy

Publications and Research

Optimality models have a checkered history in evolutionary biology. While optimality models have been successful in providing valuable insight into the evolution of a wide variety of biological traits, a common objection is that optimality models are overly simplistic and ignore organismal genetics. We revisit evolutionary optimization in the context of a major bacteriophage life history trait, lysis time. Lysis time refers to the period spanning phage infection of a host cell and its lysis, whereupon phage progenies are released. Lysis time, therefore, directly determines phage fecundity assuming progeny assembly does not exhaust host resources prior to lysis. Noting that …

Blue Mussel Hybrid Complex Shifts In The Gulf Of Maine Towards A Dominance Of Mytilus Edulis, Daniel Woods

Honors Program Theses

The Gulf of Maine (GOM) in the United States is the fastest warming body of water in the world. Due to a complex history of glaciation, the GOM has restricted circulation that causes it to function more akin to an enclosed sea. As climate change has disrupted the stable flow of the Gulf Stream, more warm-water currents are entering the GOM at higher frequency. This warming has had a profound impact on the distribution of the blue mussel, Mytilus spp., which inhabits the rocky intertidal habitat within the GOM as the main prey species to a keystone predator. Two sister …

Dataset For: Mapping Fire History And Quantifying Burned Area Through 35 Years Of Prescribed Fire History At An Illinois Tallgrass Prairie Restoration Site Using Gis, Erin G. Rowland-Schaefer, Elizabeth M. Bach, Bill P. Kleiman, Holly P. Jones

Research Datasets

Fire was important to pre-colonization prairies. In today’s remnant and reconstructed prairies, managers frequently employ prescribed fire, a historical management practice that limits woody encroachment, suppresses non-native species, and promotes nutrient cycling. However, few long-term prescribed fire spatial datasets are available for study. We used archived images of prescribed fire maps and hand-drawn fire records to generate a geospatial record of the prescribed fire history at Nachusa Grasslands, a combination remnant and restored preserve in northern Illinois. This record contains maps of the prescribed fire history of the preserve across the entirety of its 35-year history. We used the maps …

Population Assignment Of Entrained Migratory Westslope Cutthroat Trout In North Idaho, Craig D. Wells

EWU Masters Thesis Collection

The Clark Fork-Pend Oreille River basin of northeastern Washington and the Idaho Panhandle historically supported a robust metapopulation of Westslope Cutthroat Trout (WCT) Oncorhynchus clarkii lewisi, a western native salmonid of high cultural and economic value. The construction of impassible hydroelectric dams and smaller in-stream barriers has prevented the return of migratory WCT to spawning tributaries, likely leading to the fragmentation of this metapopulation over the last 100 years. One such impassible barrier is Albeni Falls Dam near Newport, Washington. Completed without fish passage capabilities in 1955, Albeni Falls Dam has been of interest as a site for restoring fish …

Analysis Of Hematocrit Levels In Walleye Sander Vitreus From Similar Waterbodies, Alyssa Hauser

Journal of Earth and Life Science

Walleye Sander vitreus are a popular fish among anglers and hold a prominent place in Minnesotan’s identity as their state fish. Because of this, multiple management practices are used to ensure the continued health of their populations within Minnesota waters. In this study, the process of analyzing hematocrit levels was used to determine if the analysis of hematological parameters could be a useful tool in detecting differences in population health. To evaluate this, blood samples were acquired from age-0 and age-1 fish from two similar lakes and run through a hematocrit centrifuge to separate platelets from plasma to read the …

The Effects Of Diet On Yellow Perch Morphology Throughout Lake Bemidji, Quiana L. Radaich

Journal of Earth and Life Science

Morphology is very important as it looks at the arrangement of an organism’s parts to determine their functionality, development, and how they could have changed through evolution. It is also important for the identification of species as it can show how closely species are related. This study examines if the morphology of yellow perch changes throughout Lake Bemidji. Along with examining a subset of five stomachs for each group (A-F) of yellow perch collected to determine if diet was a driving force behind morphological changes. The data collected in this study suggested that morphology does change throughout Lake Bemidji and …

Fibropapillomatosis And Chelonid Herpesvirus 5 Dynamics In Juvenile Green Turtles Of The Indian River Lagoon, Florida, Usa, Jake Kelley

Electronic Theses and Dissertations, 2020-2023

Fibropapillomatosis (FP) is a tumor-forming sea turtle disease that mainly affects juvenile green turtles (Chelonia mydas) in coastal foraging sites. The cause of FP is unclear, but likely involves the putative pathogen chelonid herpesvirus 5 (ChHV5). The overall dynamics of this disease are poorly understood, in part due to the difficulty of inferring disease and infection statuses of turtles without evidence of FP. In this study, I investigated the FP disease system in juvenile green turtles of the Indian River Lagoon (IRL), Florida, USA, to better understand disease and pathogen dynamics. First, I developed a hierarchical model for predicting FP …

The Effects Of Road Salt (Nacl), Predation, And Competition On The Growth And Community Interactions Of Spotted Salamanders (Ambystoma Maculatum) And Wood Frogs (Lithobates Sylvaticus), Melissa Ocampo, Catherine A. Chuirazzi, Mizuki Takahashi

Faculty Journal Articles

Road deicing salts are frequently used in northern regions of the world during the winter and early spring months. As a result, a significant portion of road runoff into surrounding aquatic habitats contains road deicing salts. Previous studies found road salt contaminations in vernal pools that pond-breeding amphibians commonly use, including spotted salamanders (Ambystoma maculatum) and wood frogs (Lithobates sylvaticus). Studies have examined the impact of road salt on both amphibian species, but to our knowledge no previous studies have examined how road salt impacts the interspecific competition between both amphibians. We hypothesized that road salt would negatively impact growth …

Final Report Floating Upwelling System Harvest Road Oceans, Robert Michael, Scott Bennett

Fisheries Occasional Publications

A Floating Upwelling System or FLUPSY is a mechanical system for the culture of seed stock during the nursery stage of commercial bivalve production.

Modeling Jadera Haematoloma’S Phenotypic Variation In The Context Of Its Developmental Plasticity, Michael C. Yorsz

Honors Theses

Phenotypic plasticity is the ability of an organism to integrate information from environmental cues to inform the development of its phenotype and remains understudied in biology. Models of plasticity are needed because evolution in the presence of plasticity is poorly understood. Jadera haematoloma, a hemimetabolous true bug, is an excellent animal model of plasticity, exhibiting a non-linear plastic response to juvenile nutrition that biases adult development into groups with differences in flight capability, wing shape, and fecundity. However, there is a lack of literature consensus regarding the range of developmental outcomes in the species. Some publications report the presence …

Nutrient Scarcity And Cellular Cooperation In A Clonal Hydroid, Weam S. El Rahmany

Graduate Research Theses & Dissertations

Biological complexity forms when lower-level units (e.g., genes, cells, organisms) cooperatively band together. This complexity may be exemplified by multicellularity, the cooperation between the cells of the same species, or symbiosis, cooperation between the cells of different species. This cooperation is under continual threat, as defection, the opposite of cooperation, is favored by default by lower-level units (i.e., cells). Animal cancers may be the most well-known phenomena that exemplify the concept of cellular defection. Cancer cells have been shown to feature morphological and metabolic traits, developed through differential gene expression or mutations, that favor their growth at the cost of …

A Comparison Of Wildfire Adaptive Traits In Juvenile Conifers Of The Northern Rockies, Andie Sonnen

Undergraduate Theses, Professional Papers, and Capstone Artifacts

Wildfire is an importance disturbance that continues to shape the ecosystems of the northern Rockies through varying patterns of frequency and intensity. Due to historical fire suppression and the hotter and drier conditions brought upon by anthropogenic climate change, wildfire frequency and intensity is increasing. These increases will alter vegetation structure and composition, but the degree to which is unknown.

Individual plant traits can offer insight into how these vegetation communities will shift, especially the particular traits that reduce fire-related mortality. To survive wildfires, juvenile northern conifers employ two strategies: increasing their bark thickness and increasing their crown height. To …

On The Need For New Measures Of Phylogenomic Support, Robert C. Thomson, Jeremy M. Brown

Faculty Publications

The scale of data sets used to infer phylogenies has grown dramatically in the last decades, providing researchers with an enormous amount of information with which to draw inferences about evolutionary history. However, standard approaches to assessing confidence in those inferences (e.g., nonparametric bootstrap proportions [BP] and Bayesian posterior probabilities [PPs]) are still deeply influenced by statistical procedures and frameworks that were developed when information was much more limited. These approaches largely quantify uncertainty caused by limited amounts of data, which is often vanishingly small with modern, genome-scale sequence data sets. As a consequence, today's phylogenomic studies routinely report near-complete …

Regenerative Agriculture Effects On Invertebrate And Bird Communities And Insect-Provided Ecosystem Services, Alex Michels

Electronic Theses and Dissertations

Conventional agricultural practices can have unintended consequences on the environment and wildlife. Insects and birds are declining at rapid rates around the world, and the current conventional agricultural paradigm is a major driver through habitat loss and the intensification of production. Invertebrates in agroecosystems provide services to both farmers and the rest of society. Regenerative systems may promote the functioning of an agroecosystem by influencing invertebrate abundance, diversity, and ecosystem services and mitigate bird and insect declines through conservation practices that increase soil health, reduce disturbances, and increase biological diversity. Here I address knowledge gaps of the effects of regenerative …

Eastern Redcedar (Juniperus Virginiana L.) Encroachment On South-Central South Dakota Rangelands: Impact On Plant Communities, Austin K. Domeier

Electronic Theses and Dissertations

Grasslands historically covered 46 million km2 of Earth’s surface representing nearly 42% of the living vegetation. Encroachment of woody species onto grasslands and savannas is a widely researched global phenomenon, with eastern redcedar (ERC) (Juniperus virginiana L.) trees being the most prominent woody encroacher in the Northern Great Plains (NGP) due to the lack of prescribed fire and planted ERC escaping from shelterbelts. This encroachment poses a threat to native plant communities in terms of their reproduction, regeneration, and diversity. ERC are fierce competitors and can establish in most soil types, are drought tolerant, and prolific seed reproducers. These qualities …

Living In A Gradient: The Influence Of Water Temperature Variation On Development, Settling Time And Survival Of Pallid Sturgeon Larvae In The Missouri River, Maria Elizabeth Erceg

Electronic Theses and Dissertations

Pallid Sturgeon (Scaphirhynchus albus) are a federally endangered species experiencing widespread reproduction and recruitment failures. Recruitment failure is hypothesized to be caused by habitat modifications made to the Missouri River that disrupt connectivity and alter temperature profiles downstream of constructed dams. Hypolimnetic releases from Missouri River dams affect the temperature downstream, creating colder conditions during the downstream drifting phase for dispersing larvae. Understanding the influence of water temperature changes on larval development is crucial for recovery efforts. In this study, we evaluated the effects of water temperature daily heating rate on energy use, settling behavior, and growth rate of endogenously …

The Naming Of Homo Bodoensis By Roksandic And Colleagues Does Not Resolve Issues Surrounding Middle Pleistocene Human Evolution, Eric Delson, Chris Stringer

Publications and Research

Roksandic et al. (2022) proposed the new species name Homo bodoensis as a replacement name for Homo rhodesiensis Woodward, 1921, because they felt it was poorly and variably defined and was linked to sociopolitical baggage. However, the International Code of Zoological Nomenclature includes regulations on how and when such name changes are allowed, and Roksandic et al.'s arguments meet none of these requirements. It is not permitted to change a name solely because of variable (or erroneous) later use once it has been originally defined correctly, nor can a name be modified because it is offensive to one or more …

Spatio-Temporal Movement Patterns Of Sub-Adult Adfluvial Bull Trout, Aimee Taylor

All Master's Theses

Bull Trout in the Yakima River basin of Washington are primarily adfluvial, often using managed lakes as habitat. Kachess Lake, composed of Big and Little Kachess Lakes, is managed by the Bureau of Reclamation (BOR) for water storage. BOR plans to build a structure that can withdraw an additional 200,000 acre-feet of water in drought years, which would disconnect the two basins for multiple years. This study examined the spatio-temporal movement of sub-adult Bull Trout in Kachess Lake to understand distribution patterns and the effects of environmental variables. We sought to answer 1) does time (week of the year), diel …

Effects Of Buried Wood On The Development Of Populus Tremuloides On Various Oil Sands Reclamation Soils, Kaitlyn E. Trepanier, Laura Manchola-Rojas, Bradley D. Pinno

Aspen Bibliography

Buried wood is an important but understudied component of reclamation soils. We examined the impacts of buried wood amounts and species on the growth of the common reclamation tree species trembling aspen (Populus tremuloides). In a greenhouse study, aspen seedlings were planted into four soil types, upland derived fine forest floor-mineral mix (fFFMM), coarse forest floor-mineral mix (cFFMM), and lowland derived peat and peat-mineral mix (PMM), that were mixed with either aspen or pine wood shavings at four concentrations (0%, 10%, 20% and 50% of total volume). Height and diameter growth, chlorophyll concentration, and leaf and stem biomass were measured. …

Artificial Intelligence System For Automatic Imaging, Quantification, And Identification Of Arthropods In Leaf Litter And Pitfall Samples, Pierce Helton, Khoa Luu, Ashley Dowling

Inquiry: The University of Arkansas Undergraduate Research Journal

It is well known that arthropods are the most diverse and abundant eukaryotic organisms on the planet. Museum and research collections have huge insect accumulations from expeditions conducted over history that contain specimens of both temporal and spatial value, including hundreds of thousands of species. This biodiversity data is inaccessible to the research community, resulting in a vast amount of “dark data”. The primary objective of this study is to develop an artificial intelligence-driven system for specimen identification that greatly minimizes the time and expertise required to identify specimens in atypical environments. Successful development will have profound impacts on both …

Management Plan For Reducing Wolverine (Gulo Gulo) Habitat Fragmentation In Canada: Travel Corridors Between Tonsa Peak And Stuart Knob, Alison Keister

Research Awards

No abstract provided.

Understanding Caribou Population Cycles, Jack R. St. John

Undergraduate Theses, Professional Papers, and Capstone Artifacts

The complex population dynamics of caribou (Rangifer tarandus) were studied to determine the patterns of their population cycles and the processes driving them. It is well established, via previous archaeological research and Indigenous knowledge, that large migrating caribou herds found in and around the tundra at northern latitudes experience population boom and busts roughly every several decades. However, the processes driving the dynamics of these cycles are relatively unknown, which makes managing caribou herds for recreational and subsistence harvests difficult. It has been hypothesized that a combination of intrinsic and extrinsic factors shape these cycles, with density-dependence, predation, …

A Stillness In The Desert? Engaging The Public Through An Immersive Exploration Of Southwest Soundscapes, Julian Kilker, Thomas Bjelic

Creative Collaborations

The pandemic highlighted the anthropocentric nature of soundscapes, while the recent popularity of electric cars, quadcopters, and “noise cancellation” earbuds demonstrated how consumer products can rapidly change our awareness of sound. While light pollution is already extensively addressed in scholarly research, popular works such as The End of Night, and public engagement such as The International Dark Sky Association, the complex interplay of sound, natural resources, and public engagement is still emerging, particularly in creative fields.

Two UNLV scholars and artists are collaborating on this project: Julian Kilker, who specializes in visual and emerging technology research, and Tom Bjelic, who …

Spatiotemporal Relationships Of Coyotes And Free-Ranging Domestic Cats As Indicators Of Conflict In Culver City, California, Rebecca N. Davenport, Melinda Weaver, Katherine C. B. Weiss, Eric G. Strauss

Center for Urban Resilience Scholarship

As habitat generalists, urban coyote (Canis latrans) populations often utilize an abundance of diverse food sources in cities. Within southern California, domestic cats (Felis catus) comprise a higher proportion of coyote diets than in other studied urban areas throughout the United States. However, it is unclear which ecological factors contribute to higher rates of cat depredation by coyotes in this region. While previous research suggests that coyote presence may have a negative effect on free-ranging domestic cat distributions, few studies have determined whether urban green spaces affect coyote or free-ranging domestic cat occurrence and activity within …

Length–Weight Relation For Seven Neotropical Freshwater Fish Species (Actinopterygii) Endemic To Central America, Justin C. Bagley, Maria Florencia Breitman, Jerald B. Johnson

Research, Publications & Creative Work

In the presently reported study, we estimated length–weight relation (LWRs) for seven species of freshwater fishes from Central America. Samples were collected using seines from 60 sites across Nicaragua, Costa Rica, and Panama during field expeditions conducted between 1997 and 2012. The fishes were preserved and transported to the lab, where their total weight (W) was measured (to nearest 0.0001 g) and standard lengths were taken (to nearest 0.01 mm). Data were collected from four livebearers (Poeciliidae), Alfaro cultratus (Regan, 1908), Phallichthys amates (Miller, 1907), Poecilia gillii (Kner, 1863), and Priapichthys annectens (Regan, 1907); the cichlids (Cichlidae), Parachromis dovii (Günther, …

Observations Of Whooping Crane Parental Provisioning Of Chicks, Glenn H. Olsen

Proceedings of the North American Crane Workshop

Crane chicks are dependent on parent birds for provisioning during the first few months of life, but no study has examined this provisioning in detail. In 2014 research staff at the U.S. Geological Survey, Eastern Ecological Science Center (formerly Patuxent Wildlife Research Center), in Laurel, Maryland, made multiple observations of parent whooping cranes (Grus americana) feeding or interacting with their chick during the 3 months from hatching to fledging. Both parents participated in the feeding of the chick and only 1 chick was raised by each pair of parent whooping cranes. Initially feeding frequency was low (0-20 times …

Surveys And Population Estimates Of A Distinctive Subpopulation Of Sandhill Cranes In The Fraser River Lowlands Of British Columbia, Myles M. Lamont

Proceedings of the North American Crane Workshop

A poorly understood subpopulation of sandhill cranes (Grus canadensis) breeds at scattered locations in the lower Fraser River Valley on the south coast of British Columbia. The area also harbors the northernmost population of overwintering sandhill cranes anywhere in its range. While sporadic monitoring has been carried out since the mid-1960s, no formal survey efforts have been attempted for the entire Fraser River lowland subpopulation. During 2014-2019 we collected groundbased survey data on presence and occupation of territories within the study area; this effort was supported by citizen science contributions. On 20 June 2019, we flew a fixed-width, …

Whooping Crane Nest Building In Southwest Indiana, Amy J. Kearns, Hillary L. Thompson, Allisyn-Marie T. Y. Gillet

Proceedings of the North American Crane Workshop

The first documented case of whooping crane (Grus americana) nest building in Indiana is described. During spring 2015, a pair of whooping cranes did not leave their wintering grounds in Gibson County, Indiana, to return to their summering area in Wisconsin. Three nest platforms were discovered after the death of the female crane. To date, this is the only documented example of a whooping crane pair in the reintroduced Eastern Migratory Population (EMP) building nest platforms outside of Wisconsin. Although fidelity to the core nesting areas in Wisconsin is strong, and natal dispersal is usually <30 km, this example from Indiana shows that whooping cranes in the EMP may have the potential to pioneer nesting areas far outside of core reintroduction areas.

Summary Of Mortality Among Captive Cranes At The International Crane Foundation: 2000–2020, Barry K. Hartup, Robert Phillips

Proceedings of the North American Crane Workshop

We reviewed mortalities of captive cranes at the International Crane Foundation (ICF) between 2000 and 2020 to provide broad insights into contemporary factors affecting the collection’s health and survival. Sixty-three deaths were documented in 13 of 15 crane species held in the ICF collection. The mean annual mortality during the study was 2.6% and the mean age (±SD) at death was 28.4 (±12.7) years. The overall total number of deaths of males and females was similar, but there was an association between sex and death of adult versus geriatric (>25 years) cranes (P < 0.01); males were more likely to die at geriatric age than females. Deaths were commonly associated with chronic health and management problems (n = 44, 79%) versus …

Florida Sandhill Crane Relocates Egg During Incubation, Timothy A. Dellinger, Miranda L. Watford, Ronald R. Bielefeld

Proceedings of the North American Crane Workshop

Anecdotal accounts of birds moving their eggs to a new location have been reported in shorebirds, waterfowl, and woodpeckers. We report relocation of an egg, 2 days prior to hatching, by an adult Florida sandhill crane (Grus canadensis pratensis). We do not know why the egg was moved, but egg movement among other species appears to be associated with nest disturbance by humans, animals, or environmental conditions.