Ecology and Evolutionary Biology Commons^™

The Role Of Machine Learning And Network Analyses In Understanding Microbial Composition In An Experimental Prairie, Ali Eastman Oku

Graduate Research Theses & Dissertations

Machine learning and network analyses are powerful modern tools can process and map out connections between large amount of ecological data from complex environmental communities. Random forests, an ensemble machine learning algorithm, are particularly powerful as they can capture complex patterns in data while remaining easily interpretable. These tools are specifically useful in experimental settings where different types of data are collected. The aim of this study was to demonstrate the utility of machine learning models and network analyses at analyzing diverse ecological data from dynamic plant-soil microbial communities in a prairie ecosystem. Our experimental system is an experimental prairie …

History, Annotated Gazetteer, And Bibliography Of Sarawak Ornithology, Frederick H. Sheldon, Dency F. Gawain, Daisy G. S. Kho, Rosalina Regai, Subir B. Shakya, Chin Aik Yeap

Occasional Papers of the Museum of Natural Science, Louisiana State University

Sarawak is Malaysia’s largest state, covering most of northern Borneo. It has a remarkable history of scientific bird study, starting in the 1840s and growing ever since. To set the stage for the gazetteer, which is the core of this paper, we start with a review of this history and discuss various forces that have influenced the direction of bird research in the state. Following this introduction comes the gazetteer, which is an annotated list of c. 865 sites in Sarawak where birds have been collected, studied, or regularly observed. The gazetteer provides the latitude, longitude, and elevation of each …

Relating Predator Community Ecology And Duck Nest Survival In Eastern South Dakota, Samantha R. Fino

Electronic Theses and Dissertations

As conversion of native grasslands and wetlands to croplands continues in the Prairie Pothole Region (PPR), managers are tasked with maintaining sustainable waterfowl populations. Mesopredator community dynamics is a hypothesized mechanism driving spatiotemporal variation of waterfowl nest survival in the PPR, yet studies often lack detailed information on mesopredator species occurrence and abundance. Therefore, understanding spatial and temporal variation in behaviors of mesopredators provides valuable insights for understanding predator-prey interactions between mesopredators and upland duck nests. Further, differences in a predator community resulting from lethal removal of dominant species may influence composition and space use patterns of subordinate and non-target …

Big Meadows Mountain Meadow & Aspen Restoration Project 2017 – 2023 Summary Report, Scott River Watershed Council

Aspen Bibliography

Big Meadows Mountain Meadow and Aspen Restoration Project is designed to enhance aspen and mountain meadow habitats at Big Meadows, a property that is privately owned by Ecotrust Forest Management (EFM). EFM owns approximately 40,000 acres in the Klamath Mountains of Siskiyou County, known as the Scott River Headwaters Property. The Scott River Headwaters Property Management Plan, developed by EFM, specifically identifies and prioritizes the restoration of aspen woodlands. As such, EFM and Scott River Watershed Council (SRWC) partnered with the goal of improving these critical habitats. The Big Meadows complex is one of the largest mountain meadow systems within …

Analyzing The Effects Of Winter-Patch Grazing And Wildfire On Insect Order Hymenoptera In The Northern Great Plains, Kaitlin Schieuer

Schultz-Werth Award Papers

Pollinators are declining globally, threatening global crop production and the biological integrity of many ecosystems. Hymenoptera (the order containing ants, bees, and wasps) is one of the most important insect orders for pollination of a variety of plants, including many crops, and is important as biocontrol for crop pests, and other herbivorous insects. Land management practices affect plant community composition, which influences vegetation-dependent insects, and consequently affects their ecosystem services. Fire and grazing are common practices on working landscapes in the Great Plains. However, how these management techniques impact insect diversity, particularly Hymenopterans, in a mixed-grass prairie ecosystem, is poorly …

Impacts Of Eastern Redcedar Juniperus Virginiana L. On Avian Communities In Eastern South Dakota, Jay Holm

Schultz-Werth Award Papers

Eastern redcedar (ERC) (Juniperus virginiana L.) is the most rapidly spreading woody species in the Northern Great Plains due to fire suppression, planting in windbreaks, and overgrazing. Its encroachment has converted already fragmented and/or degraded grassland into woodland, and there is concern that it may negatively impact grassland-obligate/dependent avian species. In this study, I evaluated avian community composition between ERC-encroached and non-encroached grasslands in eastern South Dakota. Six sites each of encroached grassland and non-encroached grassland were selected. Bird surveys were conducted by performing point counts placed equidistantly along a transect for two years. Presence and abundance of each species …

New Frontiers In The Application Of Stable Isotopes To Ecological And Ecophysiological Research, Keith Alan Hobson (Editor), John P. Whiteman (Editor), Seth Newsome (Editor)

Biological Sciences Faculty Books

This Research Topic aims to present cutting-edge applications of stable isotope methods to animal and plant ecology and ecophysiology.

Understanding The Drivers Of Body Condition In Female Elk: Implications For Nutritional Ecology On Changing Landscapes, Nicole P. Bealer

Undergraduate Theses, Professional Papers, and Capstone Artifacts

Ungulate body condition is often understood to reflect the nutritional resources on the landscape but is ultimately influenced by more than forage because body condition integrates both energetic costs and benefits. Factors driving variation in female body condition can be classified in both individual vs. environmental and bottom-up vs. top-down frameworks. My research evaluates how individual vs. environmental and bottom-up vs. top-down frameworks explain variation in ingesta-free body fat (IFBF) in female elk (Cervus canadensis). I used seven years (2015-2021) of IFBF data from monitored and recaptured female elk (n = 139) in the Ya Ha Tinda (YHT) population in …

Variation In Soil-Mediated Drought Response Traits Between Sympatric Species Of Mimulus, Anna Reitman

Scripps Senior Theses

The ‘time limitation hypothesis’ is an evolutionary theory regarding evolution in angiosperms. The theory attributes ephemeral drought stress to transitions from a perennial to annual life history and an animal- to self-pollinating mating style. The most influential edaphic parameter on water availability is soil texture (i.e. grain size) due to its controls on porosity. Adhesion weakens with coarseness allowing for expedited rates of water loss via evaporation and percolation. The potential implications of coarse soil textures on major transitions in angiosperms due to drought mediation as the ‘time-limitation hypothesis’ proposes has yet to be thoroughly examined. Here, we grew two …

Hibernation Behavior And Winter Feeding Of Northern Myotis In Coastal Populations After White-Nose Syndrome Invasion, Casey Jo Pendergast

Legacy Theses & Dissertations (2009 - 2024)

The northern myotis (Myotis septentrionalis) is a bat species suffering massive population declines due to the effects of white nose syndrome, a severe and pervasive disease threatening extinction across the species range. A remnant population of northern myotis capable of persisting despite infection with the disease has been identified across three coastal islands: Long Island, NY; Martha’s Vineyard, MA; and Nantucket, MA. This study looked to uncover the mechanisms for survival by characterizing activity of northern myotis and potential prey species throughout the hibernation season. Bat activity was monitored during the 2017/18, 2018/19, and 2019/20 winter seasons at known foraging …

Refugia From White-Nose Syndrome: Ecology And Behavior Of Northern Myotis Coastal Populations, Samantha Hoff

Legacy Theses & Dissertations (2009 - 2024)

Recent increases in anthropogenic environmental change have been directly linked to the global loss of biodiversity and are a primary driver of disease emergence in wildlife populations. Infectious diseases interact with other threats to cause population declines and changes in community composition, potentially resulting in local or global extinctions. Yet, outcomes are variable across the landscape, leading some host populations to persist at low numbers. One of the biggest challenges in conserving species threatened by disease is determining whether persisting populations can remain viable into the future once they have been driven to low abundance. White-nose syndrome (WNS) is one …

Foraging Behavior In The Eastern Subterranean Termite, Reticulitermes Flavipes (Kollar) (Isoptera: Rhinotermitidae), Anugerah Fajar

Theses and Dissertations--Entomology

Foraging is essential for survival, but it can be unpredictably dangerous due to organismal interactions like competition and predation to various environmental factors. Animals have come up with strategies to safeguard foraging. Social insects, with their elaborate division of labor, have developed sophisticated systems of foraging task allocation that allow them to capitalize resources beyond their competitors. In this thesis, I delve into the subjects of foraging behavior, allocation strategies, and the genetic basis of foraging in the eastern subterranean termite, Reticulitermes flavipes, the most widely distributed termite species in North America and one of the most economically important …

Moving Beyond The Panarchy Heuristic, David G. Angeler, Craig R. Allen

School of Natural Resources: Documents and Reviews

No abstract provided.

Evolution Of The Southwest Drought Learning Network: Collective Response To Exceptional Drought, E. Elias, B. Fuchs, J. Lisonbee, T. Bernadt, V. Martinez, T. Haigh

School of Natural Resources: Documents and Reviews

No abstract provided.

Comparing Fish Species Assemblage Between Impacted And Restored Estuarine Salt Marshes Within The Eel River Estuary, Humboldt Co. Ca, Adam Aguilar, Isaac Basham-Clair, Tristan F. Parkinson, Larkin C. Wells

Undergraduate Scholarship

This report details a study assessing the fish assemblages of a recently restored estuarine salt marsh site, and a similar unrestored and impacted site along the Eel River estuary. These two sites are located within the Eel River (Wiya’t) estuary, roughly 10 miles west of the city of Fortuna, CA. This study was conducted during the months of September through October 2023. Data collection was done through seine net dragging at randomly selected sample points across both sites. Seine net hauls were recorded by species and species count, which were later computed using a diversity index to provide values representative …

Assessment Of Living Shorelines For Restoring Fish Habitats: A Case Study From Coastal Alabama, Claire Legaspi, Matheus De Barros, Alexandra Rodriguez, Ronald Baker

Gulf and Caribbean Research

No abstract provided.

A Preliminary Assessment Of The Spawning Potential Ratio Of Five Target Species Of The Coastal Gillnet Fishery In Guyana And Suriname, Tomas Willems, Elford Liverpool, Michael Hiwat

Gulf and Caribbean Research

Data—limited stock assessment methods have the potential to positively impact livelihoods of fishermen around the world by providing management recommendations that aim to optimize sustainable yields from fisheries. Some years ago, a novel length— based (LB) method was developed for the assessment of spawning potential ratio (SPR), a measure of the reproductive capacity of fish stocks. We applied the LB—SPR method to 5 important target species of the coastal gillnet fishery in Guyana and Suriname. Nebris microps (Smalleye Croaker; 32% SPR) and Macrodon ancylodon (King Weakfish; 34% SPR) had the highest spawning potential, but remained below the 40% target level …

Effects Of Aging On The Reproductive Success Of Female Saltmarsh Sparrows (Ammospiza Caudacutus) In Maine And New Hampshire, Isabella Rose Collamati

Honors Theses and Capstones

The saltmarsh sparrow (Ammospiza caudacutus) is a ground-nesting specialist in coastal salt marshes of the Northeast. Rising sea-levels increase the loss of offspring due to tidal flooding, reducing nest success and resulting in a sharp population decline. In other avian species, age has been shown to affect nest success through altering fertility, behavior, and the number of young produced, favoring older individuals. I investigated age effects on nest success of female saltmarsh sparrows using nest monitoring data collected at four sites of a long-term demographic monitoring project: Chapman's Landing (Stratham, NH), Eldridge Marsh (Wells, ME), Popham Beach (Phippsburg, …

Predictors Of Summer Chloride Concentrations In Urban Aquatic Ecosystems, Georgianna S. Fischer

Honors Theses and Capstones

Urban aquatic ecosystems are highly threatened by excess concentrations of chloride (Cl^-), which can negatively impact the biodiversity and functioning of aquatic ecosystems. High Cl^- concentrations in most northern cities come primarily from road salt use for de-icing, in the form of NaCl. Specific pathways of runoff and hydrology of waterbodies will regulate Cl^-concentrations in the months after the snowmelt season. This study attempted to understand the hydrologic controls on Cl^- concentrations and identify how the hydrology of urban ecosystems may impact exposure to chloride in streams. To accomplish this, stream sites around the …

Insect Biodiversity Of Select Areas In The Western Suburbs Of Chicago, Bradley Dawson

Department of Entomology: Distance Master of Science Projects

Introduction

Insects make up an integral part of the landscape in North America and across the world. They occupy a myriad of niches in food webs, function as predators and prey, and provide environmental services like pollination of flowering plants and decomposition of dead animal carcasses and fecal matter. They take part in ecosystems that are often delicately balanced, and so conservation is often a worthwhile effort in areas that would otherwise be trampled by human activity. In the western suburbs of Chicago, Illinois where I reside, there is a mix of both heavily developed areas as well as some …

Chronic Wasting Disease Contamination Of Deer Scrapes, Miranda H.J. Huang, Steve Demarais, Alejandro Banda, Bronson K. Strickland, Anna Grace Welch, Scoty Hearst, Stuart Lichtenberg, Allan Houston, Kim M. Pepin, Kurt C. Vercauteren

CFR Publications

No abstract provided.

Dataset For Controllable Factors Affecting Accuracy And Precision Of Human Identification Of Animals From Drone Imagery, Landon R. Jones, Jared A. Elmore, B. S. Krishnan, Sathishkumar Samiappan, Kristine O. Evans, Morgan B. Pfeiffer, Bradley F. Blackwell, Raymond B. Iglay

CFR Publications

Dataset from the results of an experiment to determine how three controllable factors, flight altitude, camera angle, and time of day, affect human identification and counts of animals from drone images to inform best practices to survey animal communities with drones. We used a drone (unoccupied aircraft system, or UAS) to survey known numbers of eight animal decoy species, representing a range of body sizes and colors, at four GSD (ground sampling distance) values (0.35, 0.70, 1.06, 1.41 cm/pixel) representing equivalent flight altitudes (15.2, 30.5, 45.7, 61.0 m) at two camera angles (45° and 90°) and across a range of …

Mechanical Devices For Census And Detection Of Off-Host Larval Ticks (Acari: Ixodidae), Donald B. Thomas, Holly D. Gaff, Brenda Leal-Galvan

Biological Sciences Faculty Publications

Standard off-host tick census techniques are generally inefficient for larval stages. Also, such techniques expose the investigator to environmental hazards including tick bites. Mechanical devices are an option which were tested under field conditions for proof of concept and in side-by-side comparison to the standard techniques. The tick-vac collected more ticks than the legging technique, but with lower frequency of positive detections. It may have utility for sampling small areas, such as weedy corrals suspected of harboring ticks. Different configurations of tick-bots, robotic vehicles with flags, depended on intensive operator control to avoid obstacles, limiting operation to line of sight. …

Climate, Physiology, And Distributions: The Role Of Thermal Physiology In Biological Invasions, Sean D. Powers

Theses and Dissertations

Climate is a primary factor influencing species range dynamics, particularly for ectotherms whose body temperature is closely tied to the surrounding conditions. While range shifts of ectotherms are attributed to climate warming, the mechanism driving these shifts are not well understood. Studies in macrophysiology demonstrate that the interaction of climate with thermal physiology plays a key role in determining large-scale spatial and temporal patterns for many temperature-sensitive physiological traits. This work has revealed a clear relationship between thermal tolerance breadth and range size. However, more recent analyses of this relationship demonstrate that thermal tolerance breadth only provides a partial explanation …

Examining The Connectivity Of Antarctic Krill On The West Antarctic Peninsula: Implications For Pygoscelis Penguin Biogeography And Population Dynamics, Katherine L. Gallagher, Michael S. Dinniman, Heather J. Lynch

CCPO Publications

Antarctic krill (Euphausia superba) are considered a keystone species for higher trophic level predators along the West Antarctic Peninsula (WAP) during the austral summer. The connectivity of these populations may play a critical role in predator biogeography, especially for central-place foragers such as the Pygoscelis penguins that breed along the WAP during the austral summer. Here, we used a physical ocean model to examine adult krill connectivity in this region using simulated krill with realistic diel vertical migration behaviors across four austral summers. Specifically, we examined krill connectivity around the Adélie gap, a 400 km long region along …

Relationship Between Bats And Prairie-Dog (Cynomys Ludovicianus) Colonies In Western Kansas, Mario N. Rodriguez

Master's Theses or Doctor of Nursing Practice

Although it is known that prairie dog colonies can increase biodiversity in the areas surrounding them, there is extraordinarily little known about the relationship between bats and black-tailed prairie dogs (Cynomys ludovicianus). In a recent study from the Front Range of Colorado, several bat species were found to be consistently flying around prairie dog colonies, presumably foraging due to increased insect diversity and abundance. Despite the importance of prairie dogs to the ecosystem, prairie dog colonies are usually eradicated due to the perception that they adversely impact cattle grazing. If insectivorous bats are attracted to prairie dog colonies …

Habitat Associations And Fine-Scale Movements Of The Red-Spotted Toad (Anaxyrus Punctatus) In Kansas And The Efficacy Of Remote Telemetry For Monitoring Small-Scale Movements, Elisabeth Russell

Master's Theses or Doctor of Nursing Practice

As climate change progresses, arid-adapted anurans might be particularly susceptible to population declines because of their reliance on ephemeral pools for successful reproduction. Because arid-adapted anurans are difficult to study due to short active seasons and cryptic lifestyles, little is known about their habitat preferences. One such arid-adapted species is the Red-Spotted Toad (Anaxyrus punctatus; RST), a Kansas Species in Need of Conservation. Since this designation in 1987, little research has been conducted to understand their conservation needs. During the summers of 2021 and 2022, RST surveys were conducted both near areas where the species has historically been …

Biomass And Productivity Of Thalassia Testudinum In Estuaries Of The Florida Panhandle, Laura A. Yarbro, Paul R. Carlson, Ken L. Heck, Dorothy Byron, Sandra Brooke, Linda Fitzhugh, Sheila Scolaro, Barbara Albrecht, Rachel Presley, Jane M. Caffrey

Gulf and Caribbean Research

Thalassia testudinum often dominates seagrass meadows of the Florida panhandle but few measurements of productivity, biomass, density, turnover or leaf area index in this region have been made. We targeted 5 estuaries located at similar latitudes, 30⁰ ± 0.3⁰N: Big Lagoon, Santa Rosa Sound, St. Andrew Bay, St. Joseph Bay, and St. George Sound. This study was one component of a collaborative partnership of state and local researchers examining factors preventing recovery in panhandle estuarine areas that had historically contained seagrass in the 1940s and 1950s. Measurements were made twice in 2016, once in June and then again in summer …

Thermotrophy Exploratory Study, James Weifu Lee

Chemistry & Biochemistry Faculty Publications

The question of whether environmental heat energy could be utilized as a source of energy for biological metabolism is the center of this exploratory research. In 1979, this author postulated a hypothesis for the existence of thermotrophs that could isothermally utilize environmental heat energy as a source of their energy on Earth. According to this hypothesis, the thermotrophs could be the first primitive forms of life in the early Earth environment. The chemotrophs and phototrophs that we currently are all well familiar with might have been evolved somehow from the primitive thermotrophs. Furthermore, all the organisms currently regarded as the …

An Analysis Of Water Quality At Orange County, California Beaches, Naomi Meurice

Pomona Senior Theses

Beaches in Southern California are highly recreated by residents and visitors, making beaches socially and economically important. Public health departments in coastal communities are in charge of measuring water quality and ensuring it is safe for users. Research in the past has indicated that beach water quality gets worse after storms, with bacteria levels jumping on the day of a storm and staying high for up to five days. Studies have shown these spikes in bacteria to be associated with storm runoff, with beaches closer to runoff discharge locations experiencing more impact. However, prior research has not considered the period …