Ecology and Evolutionary Biology Commons^™

Commercial Fishing Identification Guide 2023, Department Of Primary Industries And Regional Development, Western Australia

Fisheries Occasional Publications

Throughout this guide you will see all or some of the marine bioregion symbols with each fish illustration, indicating where the species is most likely to occur.

This guide has been developed to help you identify the more common species in Western Australia you may encounter. The purpose of this guide is to enhance consistent and accurate species identification.

If you are unsure about a particular species (or if it is not in this guide), please discuss it with a representative of the Department of Primary Industries and Regional Development, Western Australia.

Historical Trends Of Aquatic Invasive Species Introduction And Establishment In Illinois, Usa, Carter S. Cranberg, Reuben Keller

School of Environmental Sustainability: Faculty Publications and Other Works

Tracking the introduction and establishment of aquatic invasive species (AIS) is important for monitoring the biological and economic health of freshwater environments. The state of Illinois (USA) is a critical region for understanding the threats of AIS because it possesses the only continuous aquatic habitat connecting the Laurentian Great Lakes and Mississippi River Basins. In this study, we update a previous effort to catalogue and evaluate historical AIS records from Illinois. Our updated database shows that there are now at least 92 nonindigenous aquatic species established in Illinois and a further 51 have been recorded as introduced but not established. …

Beef Color And Tenderness Response To Production Systems Utilizing Additive Combinations Of Growth-Promotant Technologies, Megan J. Webb, Janna J. Block, John R. Jaeger, R. Funston, Michael G. Gonda, Keith R. Underwood, Judson K. Grubbs, Kenneth C. Olson, Amanda D. Blair

West Central Research and Extension Center, North Platte

The objective of this study was to compare the influence of beef production systems using additive combinations of growth-promotant technologies on meat quality. Steer calves (n = 120) were assigned to 1 of 4 treatments: 1) no technology (NT; control), 2) antibiotic treated (ANT; NT plus therapeutic antibiotics, monensin, and tylosin), 3) implant treated (IMP; ANT plus a series of three implants), and 4) beta-agonist treated (BA; IMP plus ractopamine-HCl). Muscle biopsy samples from the longissimus lumborum were extracted from a subset (n = 4 per treatment) of steers to evaluate expression of calpain-1, calpain-2, and calpastatin using …

Pronghorn Survival And Resource Selection In Western Nebraska's Agriculturally Dominated Landscape, Katie Piecora

School of Natural Resources: Dissertations, Theses, and Student Research

Nebraska’s pronghorn population has been stable over the last decade, yet their presence on the landscape remains a contentious subject amongst private landowners. Conversion of grassland for crop production and increased anthropogenic activity has drastically altered pronghorn behavior throughout their current range, however basic ecology and resource use by pronghorn in Nebraska remains poorly understood. Establishing baseline population metrics and seasonal patterns of resource use for this population at the eastern periphery of the species range is critical to guide management actions. We deployed GPS collars on 110 adult pronghorn to quantify survival, mortality risk, and seasonal resource selection in …

Annotation Of Non-Model Species’ Genomes, Taiya Jarva

Master's Theses

The innovations in high throughput sequencing technologies in recent decades has allowed unprecedented examination and characterization of the genetic make-up of both model and non-model species, which has led to a surge in the use of genomics in fields which were previously considered unfeasible. These advances have greatly expanded the realm of possibilities in the fields of ecology and conservation. It is now possible to the identification of large cohorts of genetic markers, including single nucleotide polymorphisms (SNPs) and larger structural variants, as well as signatures of selection and local adaptation. Markers can be used to identify species, define population …

Neutral Theory And Beyond: A Systematic Review Of Molecular Evolution Education, Desiree Forsythe, Jeremy L. Hsu

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Molecular evolution—including the neutral theory of molecular evolution—is a major sub-discipline of evolution and is widely taught in undergraduate evolution courses. However, despite its ubiquity, there have not been any previous attempts to compile and review the molecular evolution education literature. Here, we draw upon the framework proposed in a past literature review examining the broader evolution education landscape to conduct a literature review of papers related to molecular evolution education, classifying the contributions of such papers to evolution pedagogy as well as evolution education research. We find that there remains very limited coverage of molecular evolution in the education …

Exploring The Relationships Between Mammalian Functional Trait Distributions And Regional Biomes, With Application To Miocene Paleoecology, Devra Hock-Reid

Department of Earth and Atmospheric Sciences: Dissertations, Theses, and Student Research

Paleoecology relies on understanding relationships between modern animals and their environment. Animals are adapted to niches in their environments, and those physical adaptations, or functional traits, are utilized as proxies to interpret aspects of paleo-ecosystems. Much is known about individual functional traits in extant mammals and their relationship to the environment. Less is known about how multiple functional traits across a community can be utilized for paleoecological interpretations. I develop models utilizing traits in mammalian communities at the biome level. For Chapter 1, I build a model for North American regional biomes using mammalian trait frequencies. I quantify changes in …

2023 Coordinated Spring Survey Of Mid-Continent Sandhill Cranes, Terry Liddick

United States Fish and Wildlife Service: Publications

The aerial transect portion of the coordinated spring survey of mid-continent Sandhill cranes was conducted on March 22, 2023 in Nebraska’s Central Platte and North Platte River valleys (United States). The 2023 photo-corrected aerial estimate is 1,259,000 birds. Outside the traditional aerial transect portion, observers conducted ground surveys during the period March 20–22. From these regions, observers in the Official Survey Area (OSA) of Nebraska, Kansas, Texas, Oklahoma, and Wyoming reported an additional 25,363 cranes. The 2023 total estimate (1,284,500) increased 43.1% from 2022. The current three-year average (2021–2023 with no photo correction in 2021), based on photo corrected estimates …

Variable Synchrony In Insect Outbreak Cycling Across A Forest Landscape Gradient: Multi-Scale Evidence From Trembling Aspen In Alberta, Barry J. Cooke, Jens Roland

Aspen Bibliography

Using multi-scale trembling aspen tree-ring width data from Alberta, we show that scaling has a profound influence on dendroecological inferencing. At all scales of sampling, there is a significant climatological signal whose strength is nevertheless superseded by the pervasive effect of insect herbivory. At the smallest spatial scale, 20 km x 20 km, we demonstrate a quasi-periodic pattern of sharp growth reductions and the existence of negative spatial correlations among successive outbreaks. At the intermediate spatial scale of 20 km x 80 km, we show that the period 1930-1963 was marked by extremely low correlations in aspen ring widths, with …

Phylogeny And Taxonomy Of Genus Physaria In North America, Binoshi Hettihewa

Theses

Physaria is a genus of ~108 species belonging to family Brassicaceae that is predominantly distributed in Western North America, but one species occurs in Arctic Russia and Northern Canada and several species occur in South America. Regardless of the vast number of species in the genus, the genus lacks a well-resolved phylogeny representing many taxa, partially because phylogeny reconstruction is complicated by the fact that many species of Physaria vary in chromosome numbers and ploidy levels. In chapter 1, we review how polyploids are formed and become established and summarize what is known about variation in chromosome number and ploidy …

Testing The Urban Dulling Hypothesis In An Iridescent Passerine Bird, Joanna Gresham

Master of Science in Integrative Biology Theses

Urbanization has brought grave consequences that lead to declines in many species; however, some species thrive in urban ecosystems. This allows us the opportunity to study evolution in real time, as species adapt and change in a new setting. Novel urban ecosystems have led to phenotypic divergence between urban and rural populations. There is a rich body of literature on how songbirds are affected by urbanization, however divergent signaling behaviors are less well understood. Urban color homogenization is well-documented in carotenoid-colored species. However, iridescent plumage is understudied in general, and little is understood about how environmental changes shape iridescent plumage. …

Phylogeographic History Of The Leaf-Eared Mouse, Phyllotis Xanthopygus Complex, Tabitha R. Mcfarland

Biology ETDs

Museum collections provide essential biodiversity sampling needed to understand the species limits, phylogeny, and biogeographic history of mammals, all key features of the foundation for comparative analyses in ecology and evolution. We add to this framework a diverse assemblage of species of leaf-eared mice (genus Phyllotis) in South America and then focus on the Phyllotis xanthopygus complex by combining available mitochondrial sequence (cytochrome b; cytb) data (351 GenBank samples) with 52 newly sequenced museum samples from the northern extent of this complex’s range (51 from Bolivia and 1 from northern Chile) to reconstruct evolutionary relationships using maximum …

Assessing Ecological Relationships Among Late Triassic Vertebrates In Petrified Forest National Park, Alexandra Davis Apgar

Earth and Planetary Sciences ETDs

The complex vertebrate ecosystem of the Late Triassic has not yet been fully understood, largely due to oversimplification of hypothesized trophic hierarchies and limited preservation of direct evidence of faunal interaction. Paleocommunity reconstruction attempts can also fall victim to taphonomic biases, time-averaging inaccuracies, and non-analogue paleoecologies. Utilizing a combination of PAIRS analysis and NMDS ordination, we highlight vertebrate faunal relationships within the Adamanian and Revueltian faunachrons of Petrified Forest National Park, assess the likelihood that these patterns have ecological rather than preservational drivers, and examine how these potential interactions may have been impacted by the Adamanian-Revueltian turnover event. We are …

Mitogenomes Revealed The History Of Bison Colonization Of Northern Plains After The Last Glacial Maximum, Igor V. Ovtchinnikov, Blake Mccann

Biology Faculty Publications

American bison demonstrated differential patterns of extinction, survival, and expansion since the terminal Pleistocene. We determined population dynamics of the Northern Great Plains bison using 40 mitochondrial genomes from radiocarbon dated remains with the age ranging from 12,226 to 167 calibrated years before present. Population dynamics correlated with environmental and anthropogenic factors and was characterized by three primary periods: terminal Pleistocene population growth starting 14,000 years ago, mid Holocene demographic stability between 6700 and 2700 years ago, and late Holocene population decline in the last 2700 years. Most diversification of mtDNA haplotypes occurred in the early Holocene when bison colonized …

Wave Attenuation Through Mangrove Forest Using Lidar Representation, Elizabeth Bogan

LSU Master's Theses

Mangrove forests can be found along the world’s intertidal tropical and sub-tropical coastlines. These forested wetlands provide many ecosystem services, including supporting coastal food chains, trapping sediment, and shoreline stabilization. Mangroves are also known for flood damage mitigation by dissipating waves and surge during flooding events. Thus, coastal communities declare a vested interest in the performance of the forest to mitigate flood damage. Physical models using artificial mangrove structures have shown that red mangrove-dominated fringe forests can protect built infrastructure by reducing wave height due to increased drag. One way to estimate the contribution of red mangrove (Rhizophora mangle) prop …

Two New Species Of The Remarkable Scorpion Genus Megacormus Karsch, 1881 (Scorpiones: Euscorpiidae), Rolando Teruel, František Kovařík, Graeme Lowe, František Šťáhlavský

Euscorpius

Two new species of the very interesting euscorpiid scorpion genus Megacormus Karsch, 1881, are herein described from eastern Mexico. Both had been previously misidentified in the published literature, one as Megacormus segmentatus Pocock, 1900, the other as Megacormus granosus (Gervais, 1844), but the direct comparison of adults of both sexes to adult topotypes from all members of the genus currently accepted as valid taxa, revealed solid morphological characters that warrant their recognition as distinct taxa. Both new species seem also to be endemics with a small distribution area, but apparently not restricted to a single locality. This addition raises the …

Reef Fish Movement Dynamics And Recruitment To Artificial Habitat, Jade Carver

LSU Master's Theses

Artificial reefs provide critical habitat for fish in areas lacking benthic structure, yet our understanding of how artificial reefs function and develop is limited. Here, changes in reef fish community assemblages were monitored using baited remote underwater video (BRUV) surveys (n=6) before and after a new artificial reef was deployed. Movement of red snapper (Lutjanus campechanus, n=20) and gray snapper (Lutjanus griseus, n=20) between nearby platforms (n=3) and the new artificial reef was examined using acoustic telemetry, and residency was calculated for fish associated with platforms and the artificial reef …

Holocene Rice Rats (Genus Oryzomys) From The Upper Mississippi River Drainage Basin, Hugh H. Genoways

Zea E-Books Collection

The expansion and collapse of the geographic range of the Texas rice rat (Oryzomys texensis) in the upper Mississippi River drainage basin at the end of the Holocene was a unique event in North American mammals. In a period of about 4000 years with a point of origin near the American Bottom in Illinois, these small rodents extended their geographic range in a straight-line distance of over 950 km to the west into Nebraska and the same distance to the east into Pennsylvania. Then in less than 400 years this range expansion collapsed back to a point where …

Plant Sentience: Not Now, Maybe Later?, Helen Tiffin

Animal Sentience

Segundo-Ortin’s target article provides compelling evidence for physiological and behavioral complexity in plants, bringing us closer to a recognition of some kind of plant cognition – but it does not as yet offer firm grounds for inferring sentience (feeling) in plants, The recent history of the scientific demonstration and recognition of animalsentience in invertebrates, for example, does not entirely rule out the possibility that further research might provide support for plant sentience. Should this ever turn out to be the case, the ethical problems raised are not insurmountable, and would not threaten the now proven case for animal sentience

The Impact Of Road Crossings On Karst Headwater Streams In Northwest Arkansas, Anthony M. Zenga

ATU Theses and Dissertations 2021 - Present

The karst region of NW Arkansas is home to many headwater endemic Species of Greatest Conservation Need (SGCN). This includes many species of darters, such as Etheostoma cragini, E. microperca, and E. mihileze, as well as crayfish such as Faxonious meeki brevis and F. nana. NW Arkansas is rapidly urbanizing, increasing the need to construct structures like culverts, bridges, and fords. These man-made road crossings can cause stream habitat degradation and fragmentation, as well as impair overall stream connectivity. To evaluate the impact that road crossings have on aquatic SGCN species and their habitat, 30 headwater streams were sampled throughout …

Morphological Trait Evolution In Solanum (Solanaceae): Evolutionary Lability Of Key Taxonomic Characters, Rebecca Hilgenhof, Edeline Gagnon, Sandra Knapp, Xavier Aubriot, Eric Tepe, Lynn Bohs, Leandro Giacomin, Yuri Gouvea, Andres Orejuela, Christopher T. Martine, Clara Ines Orozco, Iris E. Peralta, Tina Sarkinen

Faculty Journal Articles

Solanum is one of the world's largest and economically most important plant genera, including 1245 currently accepted species and several major and minor crops (e.g., tomato, potato, brinjal eggplant, scarlet eggplant, Gboma eggplant, lulo, and pepino). Here we provide an overview of the evolution of 25 key morphological traits for the major and minor clades of this giant genus based on stochastic mapping using a well-sampled recently published phylogeny of Solanum. The most evolutionarily labile traits (showing >100 transitions across the genus) relate to plant structure (growth form and sympodial unit structure), herbivore defence (glandular trichomes), pollination (corolla shape …

Pathogen Emergence As Complex Biological Invasion: Lessons From Dynamical Systems Modeling, Sudam Surasinghe, Marisabel Rodriguez, Victor Meszaros, Jane Molofsky, Salvador Almagro-Moreno, Brandon Ogbunugafor

Northeast Journal of Complex Systems (NEJCS)

Infectious disease emergence has become the target of cross-disciplinary efforts
that aim to understand and predict the shape of outbreaks. The many challenges
involved with the prediction of disease emergence events is a characteristic that in-
fectious diseases share with biological invasions in many subfields of ecology (e.g.,
how certain plants are able to successfully invade a new niche). Like infectious
diseases, biological invasions by plants and animals involve interactions between
agents (pathogens and plants in their respective cases) and a recipient niche. In
this study, we examine the problem of pathogen emergence through the lens of a
framework first …

Skeletal Anatomy Of The Pectoral Fin In Mudskipper Species From Terrestrial And Aquatic Habitats, Haodong Zhou, Cassandra M. Donatelli, Odette Laneuville, Emily M. Standen

Engineering Faculty Articles and Research

Mudskippers are a group of amphibious fishes in the family Oxudercidae, whose species inhabit a range of habitats from mostly aquatic to mostly terrestrial. Most of our understanding about habitat preference comes from natural history observations, particularly where they are collected (i.e., low intertidal vs. high intertidal regions). Mudskippers have undergone several morphological changes to accommodate a terrestrial life, including major changes to the pectoral and pelvic girdles. These changes result in a novel crutching gait, which mudskippers use to move over land. Though the appendicular morphology and crutching gait of mudskippers have been described in some species, few …

2023 Summer Newsletter, Plaster Creek Stewards

Newsletters

Highlights:

A Summer of Growth

Plaster Creek Has Mussels

Growing with the Green Team

Come See the Plaster Creek Mural

Lot 16: Calvin's New Bioswale

Welcome, Matt!

Student Research

Summer Reflections

The Effects Of Temperature And Flooding Duration On The Structure And Magnitude Of A Floodplain Prey Subsidy, Ryan J. Rezek, Jordan A. Massie, James A. Nelson, Rolando O. Santos, Natasha M. Viadero, W. Ryan James, Ross E. Boucek, Jennifer S. Rehage

Marine Science

Riverine floodplains serve as an important link between terrestrial and aquatic systems, as the rising and falling of water drive spatial food web subsidies that are critical to the functioning and stability of ecosystems. As these systems are increasingly impacted by hydrological alterations and climate change, it is important to understand how floodplain spatial food web subsidies may respond to changing environmental conditions.

Here, we examine the interannual variation in the structure of a sunfish (Lepomis spp.) prey subsidy from freshwater marshes into the mangrove-lined creeks of Rookery Branch in the Florida Coastal Everglades that occurs during seasonal dry downs. …

Do Species Matter? Examining The Niche Of White Ash (Fraxinus Americana L.) And Estimating Potential Subcanopy Effects Of Its Loss In North-Temperate Forests, Elizabeth Anne Studer

Dartmouth College Ph.D Dissertations

To understand the downstream consequences of the extinction of a species, we must understand its role in an ecosystem. With the impending extirpation of ash (Fraxinus spp.) due to the invasive emerald ash borer (Agrilus planipennis), understanding the role of ash trees is critical to predicting whether its loss will precipitate further species declines and/or ecosystem functions. We evaluated whether subcanopy microbial, invertebrate, and floral communities under four tree species (white ash, American beech, yellow birch, sugar maple) and on two soil hydropedological types (Bh podzol and Typical podzol) varied in species richness, composition, and functional traits in a factorial …

Characterization Of Antimicrobial Properties Of Excrement And Functional Microbiome Of Black Vultures (Coragyps Atratus), Bridgette Gray

Theses

Black vultures, Coragyps atratus, are obligate scavenging birds that consume and dispose of decaying carcasses and carrion. They fulfill a key ecological niche in the environments in which they live. It has been observed that these vultures sometimes excrete bodily waste onto their legs. This adaptive behavior could help aid them in controlling bacteria and other microbes they encounter while stepping into a carcass to eat. This study directly examined the antimicrobial properties of the excrement of black vultures across various bacterial species utilizing a zone of inhibition test and a nematode species utilizing a survival assay. The black vulture …

Incorporating Metapopulation Dynamics To Inform Invasive Species Management: Evaluating Bighead And Silver Carp Control Strategies In The Illinois River, Jahn Kallis, Richard Erickson, D. P. Coulter, Alison A. Coulter, Marybeth K. Brey, Matt Catalano, John Dettmers, James Garvey, Kevin Irons, Elizabeth Marschall, Kenneth Rose, Mark Wildhaber, David Glover

Natural Resource Management Faculty Publications

1. Invasive species management can benefit from predictive models that incorporate spatially explicit demographics and dispersal to guide resource allocation decisions.
2. We used invasive bigheaded carps (Hypophthalmichthys spp.) in the Illinois River, USA as a case study to create a spatially explicit model to evaluate the allocation of future management efforts. Specifically, we compared additional harvest (e.g. near the invasion front vs. source populations) and enhanced movement deterrents to meet the management goal of reducing abundance at the invasion front.
3. We found additional harvest in lower river pools (i.e. targeting source populations) more effectively limited population sizes upriver …

Sympatric Soil Microbe Interactions Between Streptomyces And Fusarium Isolates, Lehren A. Olk-Szost

All NMU Master's Theses

Interkingdom interactions between soil bacteria and fungi may play a critical role in occurrence of disease suppressive soils, yet our understanding of these interactions remains limited. Streptomyces are well-known producers of antimicrobial compounds important to medicine and agriculture. Production of these secondary metabolites is often mediated by quorum sensing. Most Streptomyces research occurs in single species experiments, yet new metabolites have been discovered in interspecies co-culture experiments. Interspecies, intergenic, and interkingdom co-culture research will likely reveal many valuable compounds, and strengthen our understanding of complex ecological interactions in soil microbiomes. Interactions between sympatric Streptomyces and Fusarium isolates from disease suppressive …

Tamaulipan Thornforest Restoration: Factors Influencing Restoration Outcomes And Impacts Of Cover Crops During Replanting, Jerald T. Garrett

Theses and Dissertations

Though the rate of deforestation has slowed in recent years, it remains a primary cause of land cover change within forest ecosystems. The Lower Rio Grande Valley, Texas (LRGV) has lost nearly 95% of its native thornforest since the early 1900’s due to agricultural and urban expansion. The focus of this study is to assess the current vegetative state of restored thornforest sites located in the eastern LRGV and to evaluate the use of cover crops during replanting of native seedlings. Our assessment of restored thornforest sites revealed actively restored sites demonstrated higher overall averages of richness, abundance, and diversity …