Ecology and Evolutionary Biology Commons^™

The Effects Of Beaver Dam Anaolgs On Linked Aquatic-Terrestrial Communities In Western Headwater Streams, Michelle Elyse Fillion, Benjamin P. Colman, Rachel L. Malison

Graduate Student Theses, Dissertations, & Professional Papers

In response to stream degradation resulting from the near eradication of American Beavers (Castor canadensis), managers of freshwater systems have turned to using beaver dam analogs (BDAs) as one means of restoring waterways from stream and riparian degradation. Though BDAs have been shown to restore physical traits of riparian areas, their influence on macroinvertebrates and linked aquatic-terrestrial systems is not well understood. To examine how BDAs influence aquatic habitats, macroinvertebrate communities, and riparian insectivores, we compared unrestored reference stream segments to BDA-restored segments with 7-14 BDAs in three western Montana headwater streams. We collected physical stream measurements and quantitative samples …

Habitat Selection And Connectivity Of Mountain Lions (Puma Concolor) Across Anthropogenic Barriers On The Olympic Peninsula: A Multi-Method Comparison, Thomas R. Barbee

Graduate Student Theses, Dissertations, & Professional Papers

Designing and maintaining effective wildlife corridors is an increasingly important conservation challenge in today’s fragmenting landscapes. GPS-based resource selection functions and camera-based occupancy models are both well-established staples of wildlife connectivity analyses and corridor planning, but each have notable trade-offs in cost and data resolution. Wildlife organizations worldwide rely heavily on camera-based occupancy modelling to plan wildlife corridors, especially where resource limitations or ethical concerns prohibit the use of GPS tags. If spatial connectivity maps from occupancy models could be shown to capture the essential elements of animal movement well enough to identify functionally equivalent corridors to those identified in …

The Hare And The Hawk: Predator, Prey, And Coat Color Mismatch In A Polymorphic Snowshoe Hare Population, Amanda Shuler Emmel

Graduate Student Theses, Dissertations, & Professional Papers

Climate change effects on predator-prey interactions are complex and poorly understood, with few study systems that explicitly connect specific antipredator traits to particular climate drivers. Such a system can be found in seasonal coat color change, whereby 21 species globally molt from a summer brown to a winter white coat to maintain camouflage with seasonal snow. Snowshoe hares (Lepus americanus) contend with increased predation due to climate-change induced coat color mismatch under decreasing snowcover. Through a combination of field experiments in the central Cascade mountains, my thesis investigates snowshoe hare mismatch and predation risk from both a predator …

Integrating Western Science And Indigenous Knowledge For Just Practices In Conservation, Cierra Lea Keith

Graduate Student Theses, Dissertations, & Professional Papers

No abstract provided.

Moose Abundance And Calf:Cow Ratios On The Blackfeet Indian Reservation And Glacier National Park, Landon Joel Magee

Graduate Student Theses, Dissertations, & Professional Papers

Many moose (Alces alces; Sikihtsisoo) populations across North America, especially along their southern range, are declining due to factors such as climate change, parasites and disease, predation, habitat loss and degradation, and overharvest. These declines highlight broader ecological concerns, as moose play a critical role as prey within their ecosystems. Despite their importance, data on crucial demographic parameters like abundance and age ratios are sparse for moose, complicating management efforts. Conventional monitoring methods, including radio-collaring, harvest data, public surveys, and aerial surveys, face significant logistical and financial challenges, and often fail to provide a comprehensive understanding of …

Quantifying Wastewater Contributions To The Upper Clark Fork River, Claire Utzman

Graduate Student Theses, Dissertations, & Professional Papers

Though algae are at the base of food webs in many rivers, large algal blooms are increasing in frequency and can cause problems with nutrient cycling, depletion of oxygen supplies at night, and release of toxic chemicals. One leading cause of algal blooms is nutrient loading into rivers, and controlling nutrient release in wastewater is one approach that can help limit algal growth. To reduce the intensity of algal blooms in the Clark Fork River in western Montana, numeric nutrient standards were put in place that regulated the release of the nutrients nitrogen and phosphorus into the river from wastewater. …

Bird Predation On Coho Salmon (Oncorhynchus Kisutch) In Humboldt Bay, Colton J. Dixon

Cal Poly Humboldt theses and projects

Coho Salmon (Oncorhynchus kisutch) populations along the west coast of the United States are declining. In Humboldt County, located in northwestern California, Coho Salmon have been in decline since their federal listing as threatened in 1997, primarily due to habitat loss from logging, agriculture, and urban development. Although these anthropogenic factors caused salmon populations to decline, bird predation may also be hindering population recovery, as evidenced by the recovery of Passive Integrated Transponder (PIT) tags, originally implanted in Coho Salmon, from bird colonies in Humboldt Bay. This study examines predation by Double-crested Cormorants (Phalacrocorax auritus), Caspian …

Examining The Drivers Of Nocturnal Behavior Of Pikas At Lower Elevations In Lassen National Forest, California, Evan Burnett

Cal Poly Humboldt theses and projects

The American pika (Ochotona princeps) is a charismatic mammal species adapted to occupy rockslides and boulder fields in western North America. Historically monitored due to their climate sensitivity, pikas have experienced extirpations along their lower range margins—driven by chronic and acute temperature stress—prompting increased concern and monitoring over the risks posed by anthropogenic climate change. Traditionally considered an alpine species, pikas occupy a wide range of elevations, with those at lower elevations exhibiting higher rates of nocturnality than their counterparts at higher elevations. Temperature is hypothesized to be the driver, but this has yet to be confirmed. Pikas …

Barn Owls Exert Top-Down Effects On The Abundance And Behavior Of Rodent Pests, Katherine C. Larson

Cal Poly Humboldt theses and projects

Predators can exert top-down effects on their prey by direct consumption, by imposing risk of predation, or a combination of both. However, empirical evidence for these effects is mixed and inconsistent. Barn owls in agriculture present a system with attributes that should, according to theory, lead to strong top-down effects, but research is limited and the distinction between effects on prey abundance and behavior remains unresolved. Understanding the top-down effect of predators on pests is a cornerstone of integrated pest management and important where barn owls may contribute to the control of rodents on farms. Vegetation can mediate the top-down …

Microbes: Key Constituent Of Predator Risk Cues?, Jake R. Vargas

Cal Poly Humboldt theses and projects

Chemical cues emanating from predators can play a key role in aquatic predator-prey interactions and food webs. Understanding how prey respond to these risk cues is therefore critical for understanding the direct effects of predators on prey populations and their indirect effects on communities. To respond adaptively, prey must accurately assess the risk of predation associated with perceived chemical cues, an oft-documented phenomenon. However, little is known about how cues disperse, persist, and degrade, all of which could limit the adaptive responses of prey. Using laboratory-based observations of a well-studied predator cue-induced antipredator behavior by the marine gastropod Tegula funebralis …

Fire Severity Mediates Marten And Fisher Occurrence: Impacts Of The Dixie Fire On A Carnivore Community, Christopher James Collier

Cal Poly Humboldt theses and projects

The consumption of an astounding one million acres resulted from California’s largest single fire to date, the 2021 Dixie Fire. The social and economic losses associated with the fire were immediately apparent, but the effects on wildlife remained unknown. While previous research has suggested mixed or low severity fire may be beneficial to certain wildlife species, the responses to megafires are poorly understood for many carnivores. To better understand these responses to severe fire, I used a random sampling design stratified by burn severity to survey in and around the Dixie Fire footprint using baited camera stations. This allowed me …

Pond Characteristics That Influence Oviposition Site Selection By Two Pond-Breeding Amphibians, Northern Red-Legged Frog (Rana Aurora) And Northwestern Salamander (Ambystoma Gracile), Jessica Jones

Cal Poly Humboldt theses and projects

Pond-breeding amphibians connect aquatic and terrestrial habitats through their biphasic life cycle, and understanding pond characteristics that support oviposition sites for multiple species is important for amphibian conservation. Two common amphibians in the Pacific Northwest, Northern red-legged frog (Rana aurora) and Northwestern salamander (Ambystoma gracile) often oviposit in the same pond; however, prior studies have focused on pond use by one species or the other, but not both together. I surveyed pond and oviposition site characteristics of 26 ponds in Humboldt County, CA, 10 of which were used only by R. aurora and 16 of which …

Characterizing The Habitat Use Of Pacific Coast Feeding Group Gray Whales (Eschrichtius Robustus) And The Spatial And Temporal Variability Of Their Benthic And Planktonic Invertebrate Prey In Northern California, Robyn E. Norman

Cal Poly Humboldt theses and projects

As opportunistic foragers, the Eastern North Pacific population (~20,000) of gray whales (Eschrichtius robustus) feed on diverse benthic and planktonic invertebrates in northern Alaska foraging grounds before they undertake one of the largest yearly migrations of any mammal to breed in Baja California, Mexico. While most of the population travels to the summer foraging grounds in Alaska, a sub-group of whales (~230) called the Pacific Coast Feeding Group (PCFG) summer between British Columbia, Canada, and northern California. The diet of PCFG whales typically includes high-density and/or high-caloric prey items like mysids and diverse species of amphipods, yet a …

Post-Fire Vegetation And Pyrodiversity Influence Breeding Abundances Of Lewis's Woodpeckers In The Eastern Cascades, Oregon, Brittany Welch

Cal Poly Humboldt theses and projects

Lewis’s woodpeckers (Melanerpes lewis) are described as "burn specialists" due to their preference for breeding in recently burned pine forests in the western US. However, despite increasing fire activity, this species experienced a 48% range-wide decline between 1968 and 2019, which raises questions about their adaptability to altered fire regimes in the region. We partnered with the Oregon Department of Fish & Wildlife to investigate how Lewis’s woodpeckers in the eastern Cascades, Oregon were influenced by post-fire habitat characteristics such as snag size, snag density, and burn severity across five wildfires that varied in fire age, size, and …

The Effects Of Native Perennial Cover On Physiological Indicators Of Habitat Quality For Sparrows In California Coastal Prairie Rangelands, Madeleine A. Ybarra

Cal Poly Humboldt theses and projects

Prescribed grazing management can have myriad effects on wildlife, with low to moderate grazing being associated with an increased abundance of some grassland birds. Specifically, Grasshopper Sparrow (Ammodramus savannarum) and Savannah Sparrow (Passerculus sandwichensis) abundance have been shown to be positively associated with both grazing and a higher percentage of native plant cover. However, measures of abundance provide an incomplete assessment of habitat quality for birds. Physiological and morphological measurements can help indicate environmental stress in individual birds, which reveals more information about habitat quality. We measured body condition and heterophil:lymphocyte ratios to gauge avian stress …

Effects Of Habitat Selection And Individual Quality On The Reproductive Success Of Barn Owls (Tyto Furcata), Jaime E. Carlino

Cal Poly Humboldt theses and projects

The hypothesis of adaptive breeding habitat selection proposes congruence between the evolved selection of habitats and fitness components such as reproductive success. However, mismatches between habitat selection and observed fitness outcomes are not unusual and can arise for multiple reasons. Variation in individual qualities of animals has also been found to affect reproduction and survival. I examined associations between barn owl nest box selection, reproductive output, and plumage characteristics previously shown to correspond to individual quality. I found that barn owls selected tall nest boxes made of wood, mounted high off the ground, and with increased proportions of grassland around …

Scale And Habitat Effects On Measurement Of Streptomyces Biogeography And Biodiversity, Terilyn A. Stoflet

Cal Poly Humboldt theses and projects

Bacteria in the genus Streptomyces are detected in most soils around the world, as well as on and in seeds, plants, animals, insects and the wind. Currently, more than 700 valid species of Streptomyces have been identified worldwide. Streptomyces produce the majority of antibiotics, antivirals and antifungals, as well as important agricultural bioactive molecules due to their unique genetic capabilities. Their distinct genetic abilities allow them to produce an unlimited amount of biosynthetic gene clusters, or BGC’s. Although many compounds come from Streptomyces, scientists have not discovered the biogeographic patterns of this genus. The biogeography of Streptomyces is a …

Reducing Food Scarcity: The Benefits Of Urban Farming, S.A. Claudell, Emilio Mejia

Journal of Nonprofit Innovation

Urban farming can enhance the lives of communities and help reduce food scarcity. This paper presents a conceptual prototype of an efficient urban farming community that can be scaled for a single apartment building or an entire community across all global geoeconomics regions, including densely populated cities and rural, developing towns and communities. When deployed in coordination with smart crop choices, local farm support, and efficient transportation then the result isn’t just sustainability, but also increasing fresh produce accessibility, optimizing nutritional value, eliminating the use of ‘forever chemicals’, reducing transportation costs, and fostering global environmental benefits.

Imagine Doris, who is …

Melittological Notes From Guatemala (Hymenoptera: Anthophila), 1. New Country Records For Centris Fabricius (Apidae) And Zikanapis Moure (Colletidae), Silas Bossert, José Monzón-Sierra, Richard S. Zack, Ana Cristina García, Elizabeth A. Murray

Insecta Mundi

Abstract

Three species of bees (Hymenoptera: Apidae, Colletidae) are newly recorded for Guatemala: Centris obscurior Michener, Centris vidua Mocsáry, and Zikanapis inbio (Michener, Engel and Ayala). We discuss aspects of their biology and circumstances of the collecting events and provide information on their presently known distribution.

Resumen

Se registran por primera vez tres especies de abejas (HymenopteraN: Apidae, Colletidae) para Guatemala: Centris obscurior Michener, Centris vidua Mocsáry, y Zikanapis inbio (Michener, Engel y Ayala). Discutimos aspectos de su biología, circunstancias bajo las cuáles fueron colectadas y se provee información en la distribución conocida actualmente.

A Revision Of Dyscolotaxia Horn, 1890 (Coleoptera: Eucnemidae: Macraulacinae: Macraulacini), With The Description Of Amazotaxia New Genus From South America, Robert L. Otto

Insecta Mundi

Abstract

The Neotropical eucnemid genus, Dyscolotaxia Horn, is revised following the examination of specimens from five collections, examination of the published original description of Plesiofornax tetratoma Chassain, and from images provided by Fernanda Salazar-Buenaño (QCAZI). Dyscolotaxia championi Horn is redescribed with included descriptions of the male genitalia and a female specimen. Three new species of false click beetles (Coleoptera: Eucnemidae) are described from the Neotropical region. These new species are: Dyscolotaxia chiriquiensis (Panama), Dyscolotaxia hispaniolensis (Dominican Republic), and Dyscolotaxia picea (Ecuador). Amazotaxia new genus is described from South America for Plesiofornax tetratoma Chassain, creating Amazotaxia tetratoma (Chassain) new combination. Morphology …

Evolution Of Primate Vocal Repertoires: Vocal Systems As Embodied Capital For Mediating Within-Group Conflict, Eric Schniter, Mateo Peñaherrera-Aguirre

ESI Working Papers

Life history traits constrain investments in costly neural and somatic embodied capital, potentially shaping the evolution of primate vocal communication systems. This study integrates life history theory with the social complexity hypothesis to test a sequential pathway from longevity to social dynamics to vocal repertoire size, using updated vocal repertoire data for McComb & Semple’s (2005) set of 42 non-human primate species, alongside measures of group size and within-group conflict. We compiled data on vocal repertoire size, within-group conflict, group size, endocranial volume, and maximum longevity, analysing these via Phylogenetic Sequential Canonical Cascade Model and ancestral character reconstructions. …

Description Of Sivalhippus (Equidae: Perissodactyla) From The Late Miocene Siwalik Sub-Group Of Pakistan, Muhammad Tahir Waseem, Ayesha Iqbal, Sania Zubaid, Abdul Majid Khan, Muhammad Ammar

Journal of Bioresource Management

New fossil mandible as well as isolated upper and lower dentitions of the late Miocene Hipparionine species, have been discovered from a locality of Chakwal, Punjab, Pakistan. By using morphometric and morphologic analysis, we have deduced that these specimens belong to Sivalhippus theobaldi. The body size of this species was intermediate between Sivalhippus perimensis and Hipparion antilopinum while its hypsodonty indicates that this species was a grazer to a larger extent which existed in mosaic of woodland and grassland in the Latest Miocene. However, the comparison with the recent horse (Equus caballus) mandible indicates some differences in …

Quantifying The Influences Of Abiotic And Biotic Factors On Post-Fire Vegetation In The Southwestern Us, Joseph Lafayette Crockett

Biology ETDs

The ongoing warming associated with climate change is increasing the flammability of southwestern US dry forests. As larger fractions of the landscape are impacted by high-severity fire, the potential exists for forests to convert to non-forest. Given that the forested area in the southwestern US is an important contributor of ecosystem services, quantifying limitations to vegetation establishment is critical to informing post-fire recovery efforts and understanding how ongoing climate change will limit seedling establishment in the future. To that end, this dissertation focuses on post-fire vegetation recovery of southwestern forests. First, I report on the influence of precipitation and topography …

Habitat And Demography Of The Ozark Chinquapin (Castanea Ozarkensis) At Roaring River State Park In Barry County, Missouri, Danielle Evilsizor

Electronic Theses & Dissertations

The Ozark chinquapin, Castanea ozarkensis Ashe, is a chestnut tree with a range concentrated in the Interior Highlands of North America. Like other North American members of Castanea, it was reduced from an overstory tree to an understory shrub by the invasive chestnut blight fungus (Cryphonectria parasitica [Murrill] M.E. Barr) during the early 20^th century. However, relatively little is known about the habitat of this species or its health and reproductive capability post chestnut blight. Chapter one of this study analyzed the habitat of this species through a random forest species distribution model (SDM) to predict where …

Comparative Functional And Genomic Analysis Of Protein Targets Of Sexual Selection In Primates, Brianna Ports

Electronic Theses and Dissertations

Sexual selection is driven by the differential reproductive success of individuals, which is influenced by competition for mates and mate choice. In primates, this selective pressure has been attributed to the development of distinct anatomical, physiological, and behavioral characteristics. By employing comparative functional and genomic methodologies, this study aimed to assess the repercussions of primate sexual selection. To better understand the mechanisms driving sexually selected traits, an unbiased genome-wide analysis was used to associate rates of protein evolution with relative testes size and sexual size dimorphism. While previous research focused on the rapid evolution of male reproductive proteins in response …

The Effect Of Db1976 On The Fibrotic Response In Three-Spined Stickleback (Gasterosteus Aculeatus), Saif Quraishi

Honors Scholar Theses

The study of fibrosis in stickleback has been a growing field in which there have been a few studies conducted. This study examines two experiments involving the inhibition of fibrosis in stickleback. The first experiment used fish from the Kenai River Flats (KRF) in Alaska. The second experiment used fish from Roselle Lake in British Columbia, Canada. To determine the impact the drug had on fibrosis, sticklebacks from the KRF population were treated with DB1976 as well as alum, a pro‐inflammatory vaccine adjuvant that causes fibrosis (Kool et. al 2012). When each DB1976 + alum treatment group was compared with …

Targeting Macrophytes: Increased Water Quality Through Optimized Vegetation Considerations For Constructed Wetlands, Austin Mcbrady

Masters Theses (Archived)

This study of constructed wetland design investigated relationships between macrophyte species selection and planting density for water quality improvement. A lab-scale wetland was compared against a pilot-scale wetland in San Antonio, Texas at Mitchell Lake to measure differences in effluent water quality improvement using three native macrophyte species. Using a novel, two-phase method, a targeting macrophyte was identified from among other species based on its marked capability for improving water quality factors, then was planted in varied majority densities to compare differences in treatment effectiveness. The results of this study showed that this complimentary approach to wetland design displayed significant …

Interactive Effects Of Sublethal Concentrations Of Fracking Biocides And Abandoned Mine Drainage On Amphipod Behavior, Kelly Lenhart

Electronic Theses and Dissertations

This thesis examined the sublethal effects of three pollutants, namely glutaraldehyde, 4,4-dimethyloxazolidine (DMO), and abandoned mine drainage (AMD), on amphipods. The primary objective was to investigate their combined effects on amphipods. The three pollutants, despite having the potential to combine in the environment, have not been studied to determine their potential for detrimental interactive effects which could result in unexpected environmental damage.

The research employed a series of experimental setups involving controlled exposure of amphipods to varying, putatively sublethal, concentrations of the chemicals of interest. Subsequently, effects were assessed via both behavioral and feeding assessments. To facilitate this analysis, novel …

Protocol For An Agent-Based Model Of Recombination In Bacteria Playing A Public Goods Game, Isaiah Paolo A. Lee, Omar T. Eldakar, J. Peter Gogarten, Cheryl P. Andam

Biology Faculty Articles

Agent-based models are composed of individual agents coded for traits, such as cooperation and cheating, that interact in a virtual world based on defined rules. Here, we describe the use of an agent-based model of homologous recombination in bacteria playing a public goods game. We describe steps for software installation, setting model parameters, running and testing models, and visualization and statistical analysis. This protocol is useful in analyses of horizontal gene transfer, bacterial sociobiology, and game theory.

For complete details on the use and execution of this protocol, please refer to Lee et al.¹

Mitochondrial Metabolism In Blood More Reliably Predicts Whole-Animal Energy Needs Compared To Other Tissues, Stefania Casagrande, Maciej Dzialo, Lisa Trost, Kasja Malkoc, Edyta T. Sadowska, Michaela Hau, Barbara J. Pierce, Scott R. Mcwilliams, Ulf Bauchinger

Biology Faculty Publications

Understanding energy metabolism in free-ranging animals is crucial for ecological studies. In birds, red blood cells (RBCs) offer a minimally invasive method to estimate metabolic rate (MR). In this study with European starlings Sturnus vulgaris, we examined how RBC oxygen consumption relates to oxygen use in key tissues (brain, liver, heart, and pectoral muscle) and versus the whole-organism measured at basal levels. The pectoral muscle accounted for 34-42% of organismal MR, while the heart and liver, despite their high mass-specific metabolic rate, each contributed 2.5-3.0% to organismal MR. Despite its low contribution to organismal MR (0.03-0.04%), RBC MR best predicted …