Ecology and Evolutionary Biology Commons^™

Relationship Between Trunk Cross-Sectional Area Growth And Water Stress In Garry Oaks (Q. Garryana): A Species Of Conservation Concern, John Cochrane

Student Research Symposium

In the Pacific Northwest, Quercus garryana (Garry oak trees) support over 627 native species. Garry oak natural habitat was originally maintained by indigenous practices but has been reduced to 5-10% of its range due to change in land management strategies. To support oak conservation, we need to understand heat and water affect the growth and physiology of this species. In this study, we created a fixed linear model of trunk cross-sectional growth with water stress (Ψ), photosynthetic water-use efficiency (δ¹³C), and leaf Carbon-Nitrogen ratio. We collected branch samples from the canopies of 47-64 mature Garry oaks in the …

Selection During Reproduction In Mimulus Guttatus, Desmond C. Willson, Karla De Lima Berg, Mitch Cruzan

Student Research Symposium

A lack of genomic studies examining gametophytic selection and selective embryo abortion—which occur during the reproduction of angiosperms—leaves questions regarding the adaptive and evolutionary effects of these processes. Analyzing deviations from Mendelian segregation offers an avenue for identifying loci targeted by GS and SEA, and their contributions to purging of genetic load. However, other selective processes such as meiotic drive and cytonuclear interactions, as well as pollen and ovule abortion, can cause distortion. To distinguish the effects of GS and SEA from other causes of distortion, we will perform reciprocal crosses between highly homozygous and highly heterozygous individuals of Mimulus …

Phytoplankton Community Dynamics In The Northern California Current System, Kristin Forgrave

Student Research Symposium

The Northern California Current system is a productive coastal ecosystem that encompasses a variety of temporal and spatial features. The photosynthetic microbial community plays a crucial role in supporting the rich ecosystem and economically important fisheries. My research integrates data across distance and two years to investigate the community composition of two major phytoplankton groups in this system: picocyanobacteria and picoeukaryotes. The abundances and sizes of the phytoplankton were measured using flow cytometry. Picoeukaryotes were found to be present at similar concentrations in both summer and winter. Abundances of both cell types were comparable in the winter, but picocyanobacteria were …

Reef Ecosystem Conservation For The Hawaiian Islands: The Impacts Of Ocean Warming And Acidification On Benthic Reef Populations, Samantha Roberts

Student Theses 2015-Present

This paper explores the anthropogenic effects of rapid climate change and ocean acidification on benthic coral populations along the Hawaiian archipelago. Moreover, the reliance of Hawaiian coastal communities on coral reefs for sustenance and economic prosperity is evaluated to determine the importance of reef ecosystem conservation for the prosperity of Hawaii. Chapter 1 introduces the importance of coral and supplies quantitative data on declining coral populations traditional to Hawaii, as a result of ocean warming and acidification. Empirical data from prior, prominent studies, combined with my own, will be discussed. Chapter 2 outlines the ecology of Hawaiian reef ecosystems, the …

Ancient Wisdom, Modern Prosperity: Harnessing Traditional Ecological Knowledge To Revitalize Australia's Economy, Environment, And Human Wellbeing, Annabelle L. Baulch

Student Theses 2015-Present

This paper explores the traditional knowledge of Australia’s Indigenous people and how it can improve Australia's environment, health, and economic prosperity to shape a more sustainable future. Indigenous Australians managed the land for thousands of years; however, being forced off the land following European colonization resulted in terrible cultural, social, and environmental disruption for Aboriginal Australians and made conservation efforts difficult. Wildfires, imported species, mining, and agriculture is steadily destroying the Australian ecosystem, contributing to climate change, species extinction, and gaps in our cultural and ancestral knowledge. Chapter One overviews Australia's environmental issues; it uses quantitative data to explore the …

Crossing The Ocean: The Importance Of Gene Flow In Island Evolution, Ethan F. Gyllenhaal

Biology ETDs

Islands have long been a critical arena for the development of ecological and evolutionary theory, particular due to persistent open-water gaps between them. In this dissertation I demonstrates how these caps are permeable, which can be leveraged to understand evolution on islands and more broadly. The first chapter develops this connection between ongoing, overwater gene flow and island biogeographic theory, and tests it on an archipelago species. The second take a three-pronged approach in demonstrating how over-water gene flow can bias phylogenetic inference, and how many phylogeographic metrics in islands are likely shaped by long-term gene flow. The final two …

Fecal Genomics Provides Insights On Connectivity Of Endangered Wildlife In A Human Dominated Landscape, Abhinav Tyagi

Theses and Dissertations

Many mammalian species, facing severe historic range reductions, now inhabit fragmented habitats. Habitat fragmentation involves the reduction of habitat into smaller patches, increasing distances between them, and eventually leading to small isolated populations. Species' responses to habitat alteration may vary based on factors such as body size, dispersal ability, and abundance. Understanding these differences is crucial for effective multispecies conservation planning. Genomic data, within a landscape genetic framework, are increasingly applied to evaluate the effects of habitat fragmentation and understand influential landscape features for connectivity. The quantity of data enhances the power and precision of assessing landscape impacts on gene …

Researching Covid To Enhance Recovery (Recover) Pediatric Study Protocol: Rationale, Objectives And Design, Rachel S. Gross, Tanayott Thaweethai, Erika B. Rosenzweig, James Chan, Lori B. Chibnik, Mine S. Cicek, Amy J. Elliott, Valerie J. Flaherman, Andrea S. Foulkes, Margot Gage Witvliet, Richard Gallagher, Maria Laura Gennaro, Terry L. Jernigan, Elizabeth W. Karlson, Stuart D. Katz, Patricia A. Kinser, Lawrence C. Kleinman, Michelle F. Lamendola-Essel, Joshua D. Milner, Sindhu Mohandas, Praveen C. Mudumbi, Jane W. Newburger, Kyung E. Rhee, Amy L. Salisbury, Jessica N. Snowden, Cheryl R. Stein, Melissa S. Stockwell, Kelan G. Tantisira, Tamara Bradford, Et Al

School of Medicine Faculty Publications

Importance The prevalence, pathophysiology, and long-term outcomes of COVID-19 (post-acute sequelae of SARS-CoV-2 [PASC] or “Long COVID”) in children and young adults remain unknown. Studies must address the urgent need to define PASC, its mechanisms, and potential treatment targets in children and young adults. Observations We describe the protocol for the Pediatric Observational Cohort Study of the NIH’s REsearching COVID to Enhance Recovery (RECOVER) Initiative. RECOVER-Pediatrics is an observational meta-cohort study of caregiver-child pairs (birth through 17 years) and young adults (18 through 25 years), recruited from more than 100 sites across the US. This report focuses on two of …

Lmpact Of Salmonella Enterica Effector Proteins On Plant Physiology And Immunity, Sara Qader

Honors Theses

Salmonella enterica serovar Typhimurium are primarily recognized as pathogens associated with foodborne illnesses in humans. Salmonella also can colonize plant tissue effectively. The pathogen relies on type III secretion systems (T3SS) to infect mammals and plants successfully and counteract the immune response. Understanding the molecular mechanisms underlying Salmonella’s interactions with plants is essential for developing effective strategies to reduce its impact on human health and agriculture. Effector proteins, known for their role in modulating host-pathogen interactions, have been implicated in the virulence and pathogenicity of Salmonella. However, their specific functions and contributions to Salmonella’s interactions with plants remain largely unknown. …

Beating The Heat: The Use Of Coral-Benefitting Bacteria For Heat-Stressed Anemones And Inspiring Future Biologists, Navah Eshraghi

Undergraduate Honors Theses

The warming of ocean temperatures has caused mass coral-bleaching events characterized by the expulsion of vital algal symbionts from coral tissues. However, the possibility of algal reuptake and existence of bacteria that support coral-algal symbiosis are two avenues of potential restoration efforts. Using the sea anemone Exaiptasia diaphana as a model for corals, I tested whether the coral-benefitting bacterium Endozoicomonas montiporae could enhance algal uptake under ambient (27°C) and heat-stressed (32°C) conditions. I then turned acquired results into an article modeled after National Geographic Kids to introduce the experiment to younger ages. While temperature was a larger determinant of algal-uptake …

Riparian Expansion Post-Restoration Efforts Along The Upper Clark Fork River, Makena Tanko

Graduate Theses & Non-Theses

Floodplain restoration is an intricate process aimed at promoting water quality, biodiversity, and maintaining ecological balance. However, mapping vegetation patterns on a restored floodplain can be challenging due to different geomorphic locations across a river sections, including flooding regimes, sediment characteristics, elevation, and ground water availability. This study investigates the drivers of vegetation succession in floodplains post-restoration along the Upper Clark Fork River, encompassing Phases 1, 2, 3, and 5. We analyzed key factors influencing vegetation response, including total canopy cover and woody vegetation health, in comparison to soil compaction, geomorphic location, distance from streambank, time post-restoration, and metal levels …

First Record Of The Invasive Chenopodium Aphid, Hayhurstia Atriplicis (Linnaeus, 1761) (Hemiptera: Aphididae), In Colombia, Takumasa Kondo, Roberto Rosero, Jackeline Gaviria

Insecta Mundi

The chenopodium aphid, Hayhurstia atriplicis (Linnaeus, 1761) (Hemiptera: Aphididae), is reported for the first time in Colombia. The aphid was found on the aerial parts of the quinoa plant, Chenopodium quinoa Willd. (Amaranthaceae), especially on the leaves, in five municipalities in the department of Cauca, Colombia. Brief information on its natural enemies, distribution and biology is provided. This is the only aphid in Colombia known to cause malformations on the leaves of quinoa plants. In South America, this aphid has been found previously only in Ecuador, where it was reported for the first time in 2023 based on specimens collected …

Three Additions To The False Click Beetle (Coleoptera: Elateroidea: Eucnemidae) Fauna In The Nearctic Region, Robert L. Otto

Insecta Mundi

Three species of false click beetles (Coleoptera: Eucnemidae) are added to the Nearctic fauna. One new species, Isorhipis bicolor, is described from a small series collected in Florida, U.S.A. Eighteen specimens collected from Georgia were identified as Dyscharachthis amplicollis (Fleutiaux), new U.S.A. records for a species previously taken from Japan and Southeast Asia. Examination of a series of eucnemids collected by Kyle Schnepp in Florida allowed me to revisit the Deltometopus fauna in eastern North America. Antennal structures present in a series of male specimens in the loan and past examined specimens are definitive enough to resurrect Deltometopus …

First Record Of The Beekeeping Pest Aethina Tumida Murray (Coleoptera: Nitidulidae) For Honduras, Jesus Orozco

Insecta Mundi

Aethina tumida Murray (Coleoptera: Nitidulidae) (also known as the small hive beetle), an important pest in apiaries, is reported from Honduras for the first time, new country record. The precise distribution in the country is unknown, and no damage related to it has been observed. Photographs are provided to aid in its identification. Differentiation of A. tumida from Aethina villosa Reitter and Aethina quadrata Sharp, which also occur in Honduras, is provided.

ZooBank registration. urn:lsid:zoobank.org:pub:DAF12C6A-0F8C-4151-9C4D-F191CCC4032F

The First Draft Genome Of Cold-Water Octocoral Anthothela Grandiflora, The Great Flowerbud Coral, Laurel Humphrey

Honors Scholar Theses

Cold-water corals are important sources of ocean biodiversity, yet populations are increasingly threatened by human activity and climate change. Soft octocorals may endure higher ocean acidification levels in comparison to stony hexacorals, although the mechanisms of octocoral biomineralization are less understood. Building genomic resources for cold-water octocorals could help to close information gaps by elucidating the evolutionary history of octocoral calcification and provide a reference for future studies of adaptation to acidified waters. This report describes the first reference genome for the cold-water octocoral species Anthothela grandiflora found throughout the Atlantic Ocean. Sequencing using Oxford Nanopore Technologies generated 43.6 Gb …

New Records Of Mesobuthus Rakhshanii Barahoei, 2022 In Iran (Scorpiones: Buthidae), Ersen A. Yağmur, Zhale Baghernavesi, Zahra Taherkhani, Parsa Akbari, Mohammad Moradi

Euscorpius

Mesobuthus rakhshanii Barahoei, 2022 (Scorpiones: Buthidae) was so far known only from the type locality in Sistan and Baluchestan Province, Iran. We give a list of numerous new records of this species from the same province. A map and detailed illustrations are provided.

Fiddler Crab Gut Microbiomes As An Indicator For Eutrophication Due To Waste-Water Contamination In Estuaries, Madison L. Geraci

Honors Theses

Estuaries are unique biogeochemical zones in coastal systems that provide a myriad of ecological functions: providing habitat for critically important fishery species, diverse species of plants and animals, and contributing to nutrient cycling. Estuaries are vulnerable to anthropogenic stressors as they are intersections between marine and terrestrial communities and are often the hotspot of coastal development and activity. Estuarine sediments act as repositories for anthropogenic contaminants, including excess nutrient runoffs and waste-water pollution that can cause states of eutrophication. Microorganisms are sensitive to these environmental changes, presenting a unique opportunity of being useful bioindicators of environmental stress. Isolating microorganisms from …

Impacts Of Urbanization On Demographics And The Stress Level Of White-Tailed Deer In The Piedmont Of South Carolina, Cameron Bramhall

Graduate Theses

Population demographics and density studies are a common way of determining number of individuals in location. Understanding how many individuals and sex ratios can help estimate total populations for future potential management practices. For white-tailed deer (Odocoileus virginianus), commonly referred to as whitetail deer, like other cervids, having too many or too few individuals in an area can cause issues. Some of the issues that may arise with too many individuals include higher disease potential, and a general lack of resources leading to an increase in competition. As areas that were once habitat for whitetail deer become more and more …

West Coast Rock Lobster Resource Harvest Strategy, Department Of Primary Industries And Regional Development, Western Australia

Fisheries Management Papers

Harvest strategies for Western Australia’s (WA) aquatic resources are formal documents developed by the Department of Primary Industries and Regional Development (DPIRD, the Department) to support decision-making processes that ensure the outcomes are consistent with the principles of Ecologically Sustainable Development (ESD; Fletcher 2002a) and Ecosystem Based Fisheries Management (EBFM; Fletcher et al. 2012). Harvest strategies are a key component of all contemporary fishery management systems and a requirement for certification under the Marine Stewardship Council (MSC). The objectives of ESD are reflected in the objectives of the Fish Resources Management Act 1994 (FRMA) and the Aquatic Resources Management Act …

Random-Effects Substitution Models For Phylogenetics Via Scalable Gradient Approximations, A. F. Magee, A. J. Holbrook, J. E. Pekar, Itzue W. Caviedes-Solis, F. A. Matsen Iv, G. Baele, J. O. Wertheim, X. Ji, P. Lemey, M. A. Suchard

Biology Faculty Works

Phylogenetic and discrete-trait evolutionary inference depend heavily on an appropriate characterization of the underlying character substitution process. In this paper, we present random-effects substitution models that extend common continuous-time Markov chain models into a richer class of processes capable of capturing a wider variety of substitution dynamics. As these random-effects substitution models often require many more parameters than their usual counterparts, inference can be both statistically and computationally challenging. Thus, we also propose an efficient approach to compute an approximation to the gradient of the data likelihood with respect to all unknown substitution model parameters. We demonstrate that this approximate …

Relationships, Species Boundaries, And Speciation Of Piper Section Enckea, Cara Jean Hastings

Boise State University Theses and Dissertations

Species are fundamental biological units but defining what constitutes a species has been debated by biologists, philosophers, and other scholars. Our concept of what constitutes a species has evolved over time, reflecting progress and advances in technology and types of data available as well as increased understanding of the complexity of the speciation process. To understand how extant species evolved, it is useful to evaluate their relationships using molecular data in a phylogenetic framework. By pairing phylogenetic data with other types of data including morphological and fossil data as well as topographical and climatic history, we can gain understanding of …

Variable Drought Impacts On Stream Habitat Across The Northwestern United States, Sophia Withers

Undergraduate Honors Capstone Projects

The Western United States has been in an extended drought since 2002 which can drive negative impacts on stream habitats supporting native fish and aquatic species. Stream quality, specifically in the context of fish habitat, depends on many variables, including vegetation quality. Drought conditions affect vegetation conditions; however it is unclear how drought conditions impact stream habitat quality for fish. This study examines how stream habitat quality relates to drought across the National Forests of the Northwestern US, as well as exploring whether drought increases have had a significant impact on riparian vegetation over the past 20 years. Using a …

Chemical-Mediated Mate Attraction In Clover Root Curculio (Sitona Hispidulus F.), A Belowground Pest Of Forage Crops, Kristin Leutgeb

Undergraduate Honors Capstone Projects

Curculionid beetles are well known for their production of semiochemicals, including contact (e.g. cuticular hydrocarbons) and volatile pheromones that mediate conspecific attraction and mating. Clover root curculio (CRC; Sitona hispidulus) in particular is an emergent, soil-borne pest of significant concern to producers of alfalfa and other leguminous crops in the United States. Producers have few control options for CRC and a greater understanding of chemical-mediated attraction in this species can potentially improve the sustainability of its management. To examine which chemical cues are important for affecting the behavior of CRC and whether there are sex-based differences in response, I …

Spatiotemporal Dynamics Of Disease: Social And Environmental Drivers Of Movement, Connectivity, And Disease Transmission In Bighorn Sheep, Lauren E. Ricci

All Graduate Theses and Dissertations, Fall 2023 to Present

Movement is a fundamental component of animal ecology. Animals move in order to access resources and avoid risk. Movement decisions aggregated across time determine how individuals use space, contact dynamics between individuals within a population, and connectivity across a species range. These patterns that emerge from movement decisions have downstream implications for many ecological processes and a mechanistic understanding of movement can help answer broader questions about ecology.

Disease dynamics are intrinsically tied to movement. Understanding the mechanisms that drive movement can elucidate how disease will spread and impact host populations. In this vein, I employed a suite of movement …

Top-Down Vs Bottom-Up Effects On Predator-Prey Interactions In Aquatic Communities, Catherine Mary Mcclure

All Graduate Theses and Dissertations, Fall 2023 to Present

Ecology is studied at multiple scales to better understand how small changes at the individual level scale up to affect our ecosystems and global systems. These ecological scales include individuals (single organism), populations (group of organisms of the same species), communities (populations of different species interacting with each other), and ecosystems (species interacting with other species and their local environment). The research in this document is focused on the individual, population, and community scale. In particular, this research addresses questions regarding how changes in environmental conditions (i.e., predation and resources) affect species interactions which ultimately affects the composition of ecological …

Causes And Consequences Of Space-Use Behavior Under Predation Risk In A Free-Living System, Brian J. Smith

All Graduate Theses and Dissertations, Fall 2023 to Present

Predators can have important ecological effects through killing and eating their prey, the so-called consumptive effect, but predators can also have a nonconsumptive effect (NCE) on their prey – this happens when the risk of predation itself causes prey to alter their behaviors or other traits and these alterations ultimately reduce prey survival, reproduction, or population size. While scientists understand the consumptive effects of predators well, we are still unsure whether NCEs are important in free-living systems. In this dissertation, I sought to better understand the potential NCEs of predators (wolves and cougars) on elk in northern Yellowstone National Park …

Cross-Pollination: Building A Co-Taught Course To Examine Art And Sex Through The Lens Of Botany, Christopher T. Martine, Diamanda A. Zizis, Anna K. Kell

Faculty Journal Articles

Driven by overlapping interests in plants, art, and diversity in sex expression, Anna Kell (Department of Art and Art History) and Chris Martine (Department of Biology) developed a course that integrates the perspectives of a visual artist and a botanist. Art & Sex Through the Lens of Botany seeks to impart the importance of making connections across disciplines and the value of visual literacy across academic lines. The course introduces foundational concepts in each field and encourages students to integrate and explore these different systems of knowledge and their intersections. In addition to developing fluencies related to both general botany …

Mate Choice Between Two Species Of Topminnows From Dissimilar Hybrid Zones, Chloe Davis

Honors Theses

Understanding the origins of reproductive isolation between closely related species is foundational to evolutionary and ecological research. Recent reviews have documented contemporary hybridization between a large portion of species. A greater knowledge of reproductive isolation and its components are vital to expanding conservation efforts for threats such as those to species persistence and community processes. However, there is a lack of clear understanding of how isolating mechanisms evolve throughout many systems where hybridization is prominent. Individuals within the Fundulus notatus species complex (F. notatus, F. olivaceus, and F. euryzonus) readily hybridize at many contact zones replicated throughout their …

Invasive Shrubs Differentially Alter Autumnal Activity For Three Common Small-Mammal Species, Brian M. Connolly, Chad Zirbel, Carson Keller, Mark Fuka, John L. Orrock

Biology Faculty Scholarship

Seasonal variation in animal activity influences fitness and the intensity of ecological interactions (e.g., competition, predation), yet aspects of global change in the Anthropocene may catalyze shifts in seasonal activity. Invasive plants are components of global change and can modify animal daily activity, but their influence on animal seasonal activity is less understood. We examined how invasive woody shrubs (Autumn olive [Elaeagnus umbellata] and Amur honeysuckle [Lonicera maackii]) affect seasonal activity of three common small-mammal species by coupling experimental shrub removal with autumnal camera trapping for two consecutive years at six paired forest sites (total 12 …

Bilateral Asymmetry In The First Metacarpal: The Influence Of Handedness In Humans And Non-Human Primates, Lucyna A. Bowland

Graduate Theses and Dissertations

Muscle attachment sites (entheses) are often used to infer soft tissue anatomy and reconstruct behaviors within skeletal populations, but there remains a significant debate about whether and to what degree muscle use is accurately reflected in bony morphology. One of the most difficult problems in establishing the relationship between variation in muscle use and entheseal development is the inability to exclude a variety of external factors thought to influence enthesis development, including age, sex, body mass, and activity patterns. One way around this is to take advantage of the fact that humans are handed (preferentially using one hand over another, …