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Mammalian Synthetic Biology: Emerging Medical Applications, Zoltan Kis, Hugo Sant'Ann Pereira, Takayuki Homma, Ryan M. Pedrigi, Rob Krams 2015 Imperial College London

Mammalian Synthetic Biology: Emerging Medical Applications, Zoltan Kis, Hugo Sant'ann Pereira, Takayuki Homma, Ryan M. Pedrigi, Rob Krams

Department of Mechanical and Materials Engineering: Faculty Publications

In this review, we discuss new emerging medical applications of the rapidly evolving field of mammalian synthetic biology.We start with simple mammalian synthetic biological components and move towards more complex and therapy-oriented gene circuits. A comprehensive list of ON–OFF switches, categorized into transcriptional, post-transcriptional, translational and posttranslational, is presented in the first sections. Subsequently, Boolean logic gates, synthetic mammalian oscillators and toggle switches will be described. Several synthetic gene networks are further reviewed in the medical applications section, including cancer therapy gene circuits, immuno-regulatory networks, among others. The final sections focus on the applicability of synthetic gene networks to drug …


Ink-Jet Printing: A Method For Affordable Additive Manufacturing Of Dye-Sensitized Solar Cells, Ryan Longchamps 2015 University of Alabama in Huntsville

Ink-Jet Printing: A Method For Affordable Additive Manufacturing Of Dye-Sensitized Solar Cells, Ryan Longchamps

Summer Community of Scholars Posters (RCEU and HCR Combined Programs)

No abstract provided.


Ultrafine Particle Generation And Measurement, Qiaoling Liu 2015 Virginia Commonwealth University

Ultrafine Particle Generation And Measurement, Qiaoling Liu

Theses and Dissertations

Ultrafine particles (UFPs) with diameters smaller than 100 nm are omnipresent in ambient air. They are important sources for fine particles produced through the agglomeration and/or vapor condensation. With their unique properties, UFPs have also been manufactured for industrial applications. But, from the toxicological and health perspective, ultrafine particles with high surface-to-volume ratios often have high bio-availability and toxicity. Many recent epidemiologic studies have evidence UFPs are highly relevant to human health and disease. In order to better investigate UFPs, better instrumentation and measurement techniques for UFPs are thus in need. The overall objective of this dissertation is to advance …


Efficiency Enhancement In Polymer Solar Cells With A Polar Small Molecule Both At Interface And In The Bulk Heterojunction Layer, Zhengguo Xiao, Qingfeng Dong, Qi Wang, Wenjing Tian, Hui Huang, Jinsong Huang 2015 University of Nebraska-Lincoln

Efficiency Enhancement In Polymer Solar Cells With A Polar Small Molecule Both At Interface And In The Bulk Heterojunction Layer, Zhengguo Xiao, Qingfeng Dong, Qi Wang, Wenjing Tian, Hui Huang, Jinsong Huang

Department of Mechanical and Materials Engineering: Faculty Publications

The polar molecules, including ferroelectric materials with large dipole moments, have been applied as interfacial layers to increase the efficiency of organic solar cells by increasing the bounded charge separation, tuning the energy levels, etc. Here, we report a small polar molecule 2-cyano-3- (4-(diphenylamino) phenyl)acrylic acid (TPACA) that can be either blended in the active layer or at the polymer/electrode interface to increase the efficiency of organic solar cell devices after poling. It is found that the built-in potential of the device is increased by 0.2 V after poling under negative bias. Blending TPACA into the active layer has shown …


Electron-Hole Diffusion Lengths >175 Μm In Solution-Grown Ch3Nh3Pbi3 Single Crystals, Qingfeng Dong, Yanjun Fang, Yuchuan Shao, Padhraic Mulligan, Jie Qiu, Lei Cao, Jinsong Huang 2015 University of Nebraska-Lincoln

Electron-Hole Diffusion Lengths >175 Μm In Solution-Grown Ch3Nh3Pbi3 Single Crystals, Qingfeng Dong, Yanjun Fang, Yuchuan Shao, Padhraic Mulligan, Jie Qiu, Lei Cao, Jinsong Huang

Department of Mechanical and Materials Engineering: Faculty Publications

Long, balanced electron and hole diffusion lengths greater than 100 nanometers in polycrystalline CH3NH3PbI3 are critical for highly efficient perovskite solar cells. We report that the diffusion lengths in CH3NH3PbI3 single crystals grown by a solution-growth method can exceed 175 μm under 1 sun illumination and exceed 3 mm under weak light for both electrons and holes. The internal quantum efficiencies approach 100% in 3 mm-thick single crystal perovskite solar cells under weak light. These long diffusion lengths result from greater carrier mobility, lifetime and dramatically smaller trap densities in …


Towards Tuning The Mechanical Properties Of Three-Dimensional Collagen Scaffolds Using A Coupled Fiber-Matrix Model, Shengmao Lin, Lauren A. Hapach, Cynthia Reinhart-King, Linxia Gu 2015 University of Nebraska-Lincoln

Towards Tuning The Mechanical Properties Of Three-Dimensional Collagen Scaffolds Using A Coupled Fiber-Matrix Model, Shengmao Lin, Lauren A. Hapach, Cynthia Reinhart-King, Linxia Gu

Department of Mechanical and Materials Engineering: Faculty Publications

Scaffold mechanical properties are essential in regulating the microenvironment of three-dimensional cell culture. A coupled fiber-matrix numerical model was developed in this work for predicting the mechanical response of collagen scaffolds subjected to various levels of non-enzymatic glycation and collagen concentrations. The scaffold was simulated by a Voronoi network embedded in a matrix. The computational model was validated using published experimental data. Results indicate that both non-enzymatic glycation-induced matrix stiffening and fiber network density, as regulated by collagen concentration, influence scaffold behavior. The heterogeneous stress patterns of the scaffold were induced by the interfacial mechanics between the collagen fiber network …


Development And Preliminary Evaluation Of A Spray Deposition Sensing System For Improving Pesticide Application, Melissa A. Kesterson, Joe D. Luck, Michael P. Sama 2015 University of Nebraska-Lincoln

Development And Preliminary Evaluation Of A Spray Deposition Sensing System For Improving Pesticide Application, Melissa A. Kesterson, Joe D. Luck, Michael P. Sama

Department of Mechanical and Materials Engineering: Faculty Publications

An electronic, resistance-based sensor array and data acquisition system was developed to measure spray deposition from hydraulic nozzles. The sensor surface consisted of several parallel tin plated copper traces of varying widths with varying gap widths. The system contained an embedded microprocessor to monitor output voltage corresponding to spray deposition every second. In addition, a wireless module was used to transmit the voltage values to a remote laptop. Tests were conducted in two stages to evaluate the performance of the sensor array in an attempt to quantify the spray deposition. Initial tests utilized manual droplet placement on the sensor surface …


Multiscale Modeling Of Skeletal Muscle Active Contraction In Relation To Mechanochemical Coupling Of Molecular Motors, Jiangcheng Chen, Xiaodong Zhang, Shengmao Lin, He Wang, Linxia Gu 2015 Xi’an Jiaotong University

Multiscale Modeling Of Skeletal Muscle Active Contraction In Relation To Mechanochemical Coupling Of Molecular Motors, Jiangcheng Chen, Xiaodong Zhang, Shengmao Lin, He Wang, Linxia Gu

Department of Mechanical and Materials Engineering: Faculty Publications

In this work, a mathematical model was developed to relate the mechanochemical characterizations of molecular motors with the macroscopic manifestation of muscle contraction. Non-equilibrium statistical mechanics were used to study the collective behavior of myosin molecular motors in terms of the complex conformation change and multiple chemical states in one working cycle. The stochastic evolution of molecular motor probability density distribution during the contraction of sarcomere was characterized by the Fokker-Planck Equation. Quick muscle contraction was demonstrated by the collective dynamic behavior of myosin motors, the muscle contraction force, and the muscle contraction velocity-force relation. Our results are validated against …


Inducing Persistent Flow Disturbances Accelerates Atherogenesis And Promotes Thin Cap Fibroatheroma Development In D374y-Pcsk9 Hypercholesterolemic Minipigs, Ryan M. Pedrigi, Christian Bo Poulsen, Vikram V. Mehta, Niels Ramsing Holm, Nilesh Pareek, Anouk L. Post, Ismail Dogu Kilic, Winston A.S. Banya, Gianni Dall'Ara, Alessio Mattesini, Martin M. Bjorklund, Niels P. Andersen, Anna K. Grondal, Enrico Petretto, Nicolas Foin, Justin E. Davies, Carlo Di Mario, Jacob Fog Bentzon, Hans Erik Botker, Erling Falk, Rob Krams, Ranil de Silva 2015 University of Nebraska-Lincoln

Inducing Persistent Flow Disturbances Accelerates Atherogenesis And Promotes Thin Cap Fibroatheroma Development In D374y-Pcsk9 Hypercholesterolemic Minipigs, Ryan M. Pedrigi, Christian Bo Poulsen, Vikram V. Mehta, Niels Ramsing Holm, Nilesh Pareek, Anouk L. Post, Ismail Dogu Kilic, Winston A.S. Banya, Gianni Dall'ara, Alessio Mattesini, Martin M. Bjorklund, Niels P. Andersen, Anna K. Grondal, Enrico Petretto, Nicolas Foin, Justin E. Davies, Carlo Di Mario, Jacob Fog Bentzon, Hans Erik Botker, Erling Falk, Rob Krams, Ranil De Silva

Department of Mechanical and Materials Engineering: Faculty Publications

Background—Although disturbed flow is thought to play a central role in the development of advanced coronary atherosclerotic plaques, no causal relationship has been established. We evaluated whether inducing disturbed flow would cause the development of advanced coronary plaques, including thin cap fibroatheroma (TCFA).

Methods and Results—D374Y-PCSK9 hypercholesterolemic minipigs (N=5) were instrumented with an intracoronary shear-modifying stent (SMS). Frequency-domain optical coherence tomography was obtained at baseline, immediately post-stent, 19, and 34 weeks and used to compute shear stress metrics of disturbed flow. At 34 weeks, plaque type was assessed within serially-collected histological sections and co-registered to …


Self‑Propelled Droplets On Heated Surfaces With Angled Self‑Assembled Micro/Nanostructures, Cory Kruse, Isra Somanas, Troy Anderson, Chris Wilson, Craig Zuhlke, Dennis Alexander, George Gogos, Sidy Ndao 2015 University of Nebraska-Lincoln

Self‑Propelled Droplets On Heated Surfaces With Angled Self‑Assembled Micro/Nanostructures, Cory Kruse, Isra Somanas, Troy Anderson, Chris Wilson, Craig Zuhlke, Dennis Alexander, George Gogos, Sidy Ndao

Department of Mechanical and Materials Engineering: Faculty Publications

Directional and ratchet-like functionalized surfaces can induce liquid transport without the use of an external force. In this paper, we investigate the motion of liquid droplets near the Leidenfrost temperature on functionalized self-assembled asymmetric microstructured surfaces. The surfaces, which have angled microstructures, display unidirectional properties. The surfaces are fabricated on stainless steel through the use of a femtosecond laser-assisted process. Through this process, mound-like microstructures are formed through a combination of material ablation, fluid flow, and material redeposition. In order to achieve the asymmetry of the microstructures, the femtosecond laser is directed at an angle with respect to the sample …


Quantification Of Ultraprecision Surface Morphology Using An Algebraic Graph Theoretic Approach, Prahalad Rao, Satish T. S. Bukkapatnam, Zhenyu (James) Kong, Omer F. Beyca, Kenneth Case, Ranga Komanduri 2015 State University of New York (Binghamton)

Quantification Of Ultraprecision Surface Morphology Using An Algebraic Graph Theoretic Approach, Prahalad Rao, Satish T. S. Bukkapatnam, Zhenyu (James) Kong, Omer F. Beyca, Kenneth Case, Ranga Komanduri

Department of Mechanical and Materials Engineering: Faculty Publications

Assessment of progressive, nano-scale variation of surface morphology during ultraprecision manufacturing processes, such as fine-abrasive polishing of semiconductor wafers, is a challenging proposition owing to limitations with traditional surface quantifiers. We present an algebraic graph theoretic approach that uses graph topological invariants for quantification of ultraprecision surface morphology. The graph theoretic approach captures heterogeneous multi-scaled aspects of surface morphology from optical micrographs, and is therefore valuable for in situ real-time assessment of surface quality. Extensive experimental investigations with specular finished (Sa ~ 5 nm) blanket copper wafers from a chemical mechanical planarization (CMP) process suggest that the proposed method was …


Evaluation Of Peritoneal Microbubble Oxygenation Therapy In A Rabbit Model Of Hypoxemia, Nathan D. Legband, Jameel A. Feshitan, Mark A. Borden, Benjamin S. Terry 2015 University of Nebraska-Lincoln

Evaluation Of Peritoneal Microbubble Oxygenation Therapy In A Rabbit Model Of Hypoxemia, Nathan D. Legband, Jameel A. Feshitan, Mark A. Borden, Benjamin S. Terry

Department of Mechanical and Materials Engineering: Faculty Publications

Alternative extrapulmonary oxygenation technologies are needed to treat patients suffering from severe hypoxemia refractory to mechanical ventilation. We previously demonstrated that peritoneal microbubble oxygenation (PMO), in which phospholipid-coated oxygen microbubbles (OMBs) are delivered into the peritoneal cavity, can successfully oxygenate rats suffering from a right pneumothorax. This study addressed the need to scale up the procedure to a larger animal with a splanchnic cardiac output similar to humans. Our results show that PMO therapy can double the survival time of rabbits experiencing complete tracheal occlusion from6.6 ± 0.6 min for the saline controls to 12.2 ± 3.0 min for the …


Enhanced Pool-Boiling Heat Transfer And Critical Heat Flux On Femtosecond Laser Processed Stainless Steel Surfaces, Cory M. Kruse, Troy Anderson, Chris Wilson, Craig Zuhlke, Dennis Alexander, George Gogos, Sidy Ndao 2015 University of Nebraska-Lincoln

Enhanced Pool-Boiling Heat Transfer And Critical Heat Flux On Femtosecond Laser Processed Stainless Steel Surfaces, Cory M. Kruse, Troy Anderson, Chris Wilson, Craig Zuhlke, Dennis Alexander, George Gogos, Sidy Ndao

Department of Mechanical and Materials Engineering: Faculty Publications

In this paper, we present an experimental investigation of pool boiling heat transfer on multiscale (micro/nano) functionalized metallic surfaces. Heat transfer enhancement in metallic surfaces is very important for large scale high heat flux applications like in the nuclear power industry. The multiscale structures were fabricated via a femtosecond laser surface process (FLSP) technique, which forms self-organized mound-like microstructures covered by layers of nanoparticles. Using a pool boiling experimental setup with deionized water as the working fluid, both the heat transfer coefficients and critical heat flux were investigated. A polished reference sample was found to have a critical heat flux …


Torque Testing System: Flowserve Corporation, Taylor Catlin, David Reese, Bodin Rojanachaichanin, Kyle Stangland 2015 Cal Poly

Torque Testing System: Flowserve Corporation, Taylor Catlin, David Reese, Bodin Rojanachaichanin, Kyle Stangland

Mechanical Engineering

Flowserve Corporation provides products and customer support to companies in the process industry for the design, testing, and manufacturing of mechanical seals. This includes, but is not limited to, companies concerned with power generation, fossil fuels, water resources, and chemical processing. In industries where fluid transportation is leveraged, mechanical seals have been utilized in pumps to increase performance. A mechanical seal is a design feature in pumps that seal the impeller housing and allow for little to no leakage. This technology is cutting edge and a considerable amount of research pertaining to the advantageous effects of specialized surface features is …


Nanoindentation Of A Zinc Metal Soap Mixture For Use In A Laser Printer, George A. Nimick 2015 University of Kentucky

Nanoindentation Of A Zinc Metal Soap Mixture For Use In A Laser Printer, George A. Nimick

Theses and Dissertations--Chemical and Materials Engineering

At the start of this project, the possible choices of metal soaps had already been narrowed to include some of the zinc soaps used in this project. These zinc soaps are mixtures of zinc stearate and zinc palmitate of varying ratios purchased from a supplier. Zinc soap was chosen as result of its common use in various industries as a lubricant and mold release, which implied potential benefits in an electrophotographic printing system. These potential benefits include, but are not limited to, a more efficient transfer from a photoconductive drum and protection of the drum from mechanical and chemical degradation. …


Influence Of Spatial Variations Of Railroad Track Stiffness And Material Inclusions On Fatigue Life, Celestin Nkundineza 2015 University of Nebraska-Lincoln

Influence Of Spatial Variations Of Railroad Track Stiffness And Material Inclusions On Fatigue Life, Celestin Nkundineza

Department of Mechanical and Materials Engineering: Dissertations, Theses, and Student Research

Railroad transportation is very important for economic growth and effective maintenance is one critical factor for its economic sustainability. The high repetitive forces from a moving railcar induce cyclic stresses that lead to rail bending and potential deterioration due to fatigue crack initiation and propagation. Previous research for prediction of fatigue life has been done under the assumptions of a uniform track bed and a homogeneous rail. However the spatial variation of the track stiffness is expected to increase the maximum stresses in the rail and, therefore, accelerate the fatigue process. The research described in this dissertation is focused on …


Generation And Delivery Of Charged Aerosols To Infant Airways, Landon T. Holbrook 2015 Virginia Commonwealth University

Generation And Delivery Of Charged Aerosols To Infant Airways, Landon T. Holbrook

Theses and Dissertations

The administration of pharmaceutical aerosols to infants on mechanical ventilation needs to be improved by increasing the efficiency of delivery devices and creating better ways of evaluating potential therapies. Aerosolized medicines such as surfactants have been administered to ventilated infants with mixed results, but studies have shown improvement in respiratory function with a much lower dose than with liquid instillation through an endotracheal tube (ETT). An aerosolized medicine must be transported through the ventilation tubing and deposit in the lungs to have the desired therapeutic response.

This work has taken a systematic approach to (i) develop new devices for the …


A Study To Evaluate Non-Uniform Phase Maps In Shape Memory Alloys Using Finite Element Method, Naren Motte 2015 Virginia Commonwealth University

A Study To Evaluate Non-Uniform Phase Maps In Shape Memory Alloys Using Finite Element Method, Naren Motte

Theses and Dissertations

The unique thermo-mechanical behavior of Shape Memory Alloys (SMAs), such as their ability to recover the original shape upon heating or being able to tolerate large deformations without undergoing plastic transformations, makes them a good choice for actuators.

This work studies their application in the aerospace and defense industries where SMA components can serve as release mechanisms for gates of enclosures that have to be deployed remotely. This work provides a novel approach in evaluating the stress and heat induced change of phase in a SMA, in terms of the transformation strain tensor. In particular, the FEA tool

ANSYS has …


A Planar Pseudo-Rigid-Body Model For Cantilevers Experiencing Combined Endpoint Forces And Uniformly Distributed Loads Acting In Parallel, Philip James Logan 2015 University of South Florida

A Planar Pseudo-Rigid-Body Model For Cantilevers Experiencing Combined Endpoint Forces And Uniformly Distributed Loads Acting In Parallel, Philip James Logan

USF Tampa Graduate Theses and Dissertations

This dissertation describes the development and effectiveness of a mathematical model used to predict the behavior of cantilever beams whose loading conditions include parallel combinations of evenly distributed loads and endpoint forces. The large deflection of cantilever beams has been widely studied. A number of models and mathematical techniques have been utilized in predicting the endpoint path coordinates and load-deflection relationships of such beams. The Pseudo-Rigid-Body Model (PRBM) is one such method which replaces the elastic beam with rigid links of a parameterized pivot location and torsional spring stiffness. In this paper, the PRBM method is extended to include cases …


Stress-Limiting Test Structures For Rapid Low-Cost Strength And Stiffness Assessment, Andrew Katz, Craig P. Lusk, Nathan B. Crane 2015 University of South Florida

Stress-Limiting Test Structures For Rapid Low-Cost Strength And Stiffness Assessment, Andrew Katz, Craig P. Lusk, Nathan B. Crane

Faculty Publications

Purpose: Evaluate the use of a simple printed geometry to estimate mechanical properties (elastic modulus, yield strength) with inexpensive test equipment.

Design Methodology/Approach: Test geometry is presented that enables controlled strains with manual deformation and repeatable measurement of vibrational frequencies. This is tested with multiple FDM machines to assess measurement accuracy and repeatability. Printing orientation and some printing parameters are varied to assess the measurement sensitivity.

Findings: The test methods show good correlation with manufacturer material specifications in the X-Y plane and reported elastic strain limits. It is also sensitive to printing orientation and printing parameters.

Research Limitations/Implications: Further work …


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