Signal Processing Commons^™

Modeling Biological Structures Via Abstract Grammars To Solve Common Problems In Computational Biology, David J. Russell

Department of Electrical and Computer Engineering: Dissertations, Theses, and Student Research

Grammars are generally understood to be the set of rules that define the relationships between elements of a language. However, grammars can also be used to elucidate structural relationships within sequences constructed from any finite alphabet. In this work abstract grammars are used to model the primary and secondary structures present in biological data. These grammar models are inferred and applied to efficiently solve various sequence analysis problems in computational biology, including multiple sequence alignment, fragment assembly, database redundancy removal, and structural prediction.

The primary structures, or sequential ordering of symbols, of biological data are first modeled with Lempel-Ziv (LZ) …

Charge Injection And Clock Feedthrough, Jonathan Yu

Master's Theses

Turning off a transistor introduces an error voltage in switched-capacitor circuits. Circuits such as analog-to-digital converters (ADC), digital-to-analog converters (DAC), and CMOS image sensor pixels are limited in performance due to the effects known as charge injection and clock feedthrough. Charge injection occurs in a switched-capacitor circuit when the transistor turns off and disperses channel charge into the source and drain. The source, which is the sampling capacitor, experiences an error in the sampled voltage due to the incoming channel charge. Simultaneously, the coupling due to gate-source overlap capacitance also contributes to the total error voltage, which is known as …

Nonlinear Fiber Lasers Using Bismuth Based Erbium Doped Fiber Amplifier., Sharifeh Shahi

Student Works (2010-2019)

A thorough study on Bismuth-based Erbium-doped fiber (Bi-EDF) is presented for wide-band amplifiers and multi-wavelength fiber laser applications. This fiber allows high Erbium ions concentration to be doped without a significant concentration quenching effect. The high refractive index characteristic in the Bi-EDF has broadened the emission spectrum of Erbium ions to achieve a broader gain spectrum up to extended L-band region compared to normal silica-based Erbium-doped fiber (EDF). The Bi-EDFA performances have been investigated in terms of power conversion efficiency (PCE), quantum conversion efficiency (QCE), gain and noise figure. The highest QCE and PCE for a 215 cm long of …