Theory and Algorithms Commons^™

Markov Chain Wave Generative Adversarial Network For Bee Bioacoustic Signal Synthesis, Kumudu Samarappuli, Iman Ardekani, Mahsa Mohaghegh, Abdolhossein Sarrafzadeh

Electrical & Computer Engineering Faculty Publications

This paper presents a framework for synthesizing bee bioacoustic signals associated with hive events. While existing approaches like WaveGAN have shown promise in audio generation, they often fail to preserve the subtle temporal and spectral features of bioacoustic signals critical for event-specific classification. The proposed method, MCWaveGAN, extends WaveGAN with a Markov Chain refinement stage, producing synthetic signals that more closely match the distribution of real bioacoustic data. Experimental results show that this method captures signal characteristics more effectively than WaveGAN alone. Furthermore, when integrated into a classifier, synthesized signals improved hive status prediction accuracy. These results highlight the potential …

Machine Learning-Based Lifetime Prediction Of Lithium Batteries: A Comparative Assessment For Electric Vehicle Applications, Abdelilah Hammou, Raffaele Petrone, Demba Diallo, Boubekeur Tala-Ighil, Philippe Makany Boussiengue, Hicham Chaoui, Hamid Gualous

Electrical & Computer Engineering Faculty Publications

This paper evaluates and compares four data-driven methods (Gaussian Process Regression (GPR), echo state network (ESN), gated recurrent unit (GRU), and long short-term memory (LSTM)) for lithium-ion capacity prognostics adapted to electric vehicle conditions. This comparison aims to find the most efficient prognosis method considering two constraints: the limitation of computational power and the unavailability of on-board capacity measurement that requires full charge and discharge conditions. The machine learning models are trained using capacity values estimated under vehicle conditions. The ageing data is collected from cycling tests of two battery chemistries, Lithium Fer Phosphate (LFP) and Nickel Manganese Cobalt (NMC), …

The Crucial Role Of Machine Learning Models In Predicting Current Childhood Asthma: Model Comparison, Calibration, And Shap-Based Interpretation, Aditya Chakraborty, A. K.M. Raquibul Bashar

Epidemiology, Biostatistics, & Environmental Health Faculty Publications

Background: Asthma is one of the most prominent chronic diseases in children and one of the most challenging ailments to diagnose in infants and preschoolers in the United States. Predictive models can be instrumental in improving early diagnosis, personalized treatment strategies, and disease progression. By utilizing nationalized data, this study focuses on building and comparing high-performing analytical predictive models based on the relevant risk factors and identifying the most influential predictors.

Methods: We analyzed cross-sectional BRFSS Asthma Call-Back Survey data (2011-2020; N = 9,813) and randomly split participants into training and testing sets. An XGBoost model (hyperparameters tuned via grid …

Evops: Evolutionary Patch Selection In The Embedding Space Of Whole Slide Images, Saya Hashemian

Theses and Dissertations (Comprehensive)

Computational pathology increasingly relies on the analysis of Whole-Slide Images (WSIs), which capture tissue specimens at gigapixel resolution. Because a single slide is far too large to process directly, the

prevailing paradigm decomposes each WSI into thousands of small patches and encodes them as high- dimensional feature embeddings using deep learning backbones. While effective, this paradigm carries a

substantial cost: the resulting collections of patch embeddings are computationally expensive to store and process, and they are frequently dominated by redundant, homogeneous, or otherwise uninformative tissue regions that dilute the diagnostic signal. Existing patch selection methods largely depend on heuristic or …

Making Unsafe Sequences Unexecutable: Formal Protocol Enforcement For Cyber-Physical Systems, Arthur Amorim

Graduate Studies Theses and Dissertations 2026

Cyber-physical systems execute physical actions in response to software commands, making their communication protocols a primary attack surface. A stealthy attack is a sequence of individually valid messages that violates a required ordering, driving the system into an unsafe state without malware or protocol violation. Existing defenses examine messages or physical state in isolation, not protocol level sequences, and cannot prevent them. Preventing them requires enforcement that makes unsafe sequences unexecutable at the communication boundary.

Formal methods offer a principled path to enforcement, but no tool spans specification to safe deployed hardware. Model checking automates proofs but has no certified …

The Excess Path Length Distribution: A Stochastic Model For Sample-Based Path Planners, Chaz B. Cornwall

Dissertations, Master's Theses and Master's Reports

Through random sampling, sample-based path planners enable autonomous agents to quickly find paths without human intervention. However, due to the paths' randomness, sample-based path planners currently require additional verification, partially nullifying agents' ability to act autonomously. I set out to characterize this uncertainty so humans know what to expect from these path planners and know how to alter the path planner to desired specifications. To ensure the results are theoretical as well as practical, I first create a stochastic model of path length uncertainty using the trade-off between sampling time and optimality. By leveraging this model, my proposed algorithm reduces …

Using Automotive Lidar To Reduce The Energy Consumption Of An Ego Autonomous Vehicle, Logan P. Schexnaydre

Dissertations, Master's Theses and Master's Reports

There is significant potential to reduce the energy consumption of the transportation sector through autonomous vehicles. Prior work on autonomous vehicle energy efficiency focuses on the whole system or the control subsystem. Yet, the sensing and processing components, which have direct and indirect effects on net energy use, are less explored. This dissertation fills this gap by modeling and evaluating these effects for lidar sensors, which provide high-resolution spatial data at the cost of high power and processing demands. I apply lidar to the energy-saving tasks of automated vehicle following and road surface profiling. For automated vehicle following, I model …

Explainable Physics-Based Constraints On Reinforcement Learning For Accelerator Optimization, Jonathan Colen, Malachi Schram, Kishansingh Rajput, Armen Kasparian

Data Science Faculty Publications

We present a reinforcement learning (RL) framework for optimizing particle accelerator experiments that builds explainable physics-based constraints on agent behavior. The goal is to increase transparency and trust by letting users verify that the agent’s decision-making process incorporates suitable physics. Our algorithm uses a learnable surrogate function for physical observables, such as energy, and uses them to fine-tune how actions are chosen. This surrogate can be represented by a neural network or by an interpretable sparse dictionary model. We test our algorithm on a range of particle accelerator optimization environments designed to emulate the Continuous Electron Beam Accelerator Facility at …

Maxgrnet: A Multi-Axis Vision Transformer With Improved Generalization For Eye Disease Classification Using Explainable Ai With Insertion-Deletion Operations On Fundus Images, Md Mehedi Hasan Santo, Fuyad Hasan Bhoyan, Fuad Ibne Jashim Farhad, Fahmid Al Farid, Sovon Chakraborty, Md Humaion Kabir Mehedi, Jia Uddin, Hezerul Bin Abdul Karim

Computer Science Faculty Publications

Eye diseases, including diabetic retinopathy (DR), glaucoma, and cataracts, represent a major global health concern and can lead to severe visual impairment or blindness if not identified in a timely manner. This study proposes a novel eye disease classification framework based on a multi-axis vision transformer (MaxViT) applied to color fundus images with Explainable Artificial Intelligence (XAI) techniques to enhance model transparency. The proposed architecture integrates transformer-based attention mechanisms with Global Response Normalization (GRN)-based multi-layer perceptron (MLP) layers to capture complex spatial and contextual relationships within fundus images effectively. The model was evaluated on a publicly available eye disease classification …

Variational Autoencoder Inverse Mapper For Extraction Of Compton Form Factors: Benchmarks And Conditional Learning, Douglas Adams, Md Fayaz Bin Hossen, Joshua Bautista, Gia-Wei Chern, Simonetta Liuti, Marie Boër, Marija Čuić, Michael Engelhardt, Gary R. Goldstein, Huey-Wen Lin, Yaohang Li

Computer Science Faculty Publications

Deeply virtual exclusive scattering processes (DVES) serve as precise probes of nucleon quark and gluon distributions in coordinate space. These distributions are derived from generalized parton distributions (GPDs) via Fourier transform relative to proton momentum transfer. QCD factorization theorems enable DVES to be parameterized by Compton form factors (CFFs), which are convolutions of GPDs with perturbatively calculable kernels. Accurate extraction of CFFs from DVCS, benefiting from interference with the Bethe–Heitler (BH) process and a simpler final state structure, is essential for inferring GPDs. This paper focuses on extracting CFFs from DVCS data using a variational autoencoder inverse mapper (VAIM) and …

Toward An Event-Level Analysis Of Hadron Structure Using Differential Programming, Kevin Braga, Markus Diefenthaler, Steven Goldenberg, Daniel Lersch, Yaohang Li, Jian-Wei Qiu, Kishansingh Rajput, Felix Ringer, Nobuo Sato, Malachi Schram

Computer Science Faculty Publications

Reconstructing the internal properties of hadrons in terms of fundamental quark and gluon degrees of freedom is a central goal in nuclear and particle physics. This effort lies at the core of major experimental programs, such as the Jefferson Lab 12 GeV program and the upcoming Electron-Ion Collider. A primary challenge is the inherent inverse problem: converting large-scale observational data from collision events into the fundamental quantum correlation functions (QCFs) that characterize the microscopic structure of hadronic systems within the theory of QCD. Recent advances in scientific computing and machine learning have opened new avenues for addressing this challenge using …

Deep Incomplete Multi-View Clustering Via Hierarchical Imputation And Alignment, Yiming Du, Ziyu Wang, Jian Li, Rui Ning, Lusi Li

Computer Science Faculty Publications

Incomplete multi-view clustering (IMVC) aims to discover shared cluster structures from multi-view data with partial observations. The core challenges lie in accurately imputing missing views without introducing bias, while maintaining semantic consistency across views and compactness within clusters. To address these challenges, we propose DIMVC-HIA, a novel deep IMVC framework that integrates hierarchical imputation and alignment with four key components: (1) view-specific autoencoders for latent feature extraction, coupled with a view-shared clustering predictor to produce soft cluster assignments; (2) a hierarchical imputation module that first estimates missing cluster assignments based on cross-view contrastive similarity, and then reconstructs missing features using …

Untrained Position-Encoded Multilayer Perceptron Network For Structured Illumination Microscopy Reconstruction, Sahil Sharma, Leonidas Zimianitis, Krishnendu Samanta, Balpreet Singh Ahluwalia, Joby Joseph, Dushan N. Wadduwage

Computer Science Faculty Publications

Structured Illumination Microscopy (SIM) enables super-resolution imaging by encoding high-frequency spatial information through patterned light. While traditional Fourier-based reconstruction methods are prone to artifacts under suboptimal conditions, recent deep learning approaches often require large training datasets and lack adaptability across different imaging setups. In this work, we present Position Encoded Multi-Layer Perceptron (PEM) network that leverages implicit neural representations (INRs) and SIM forward-model-driven modeling to reconstruct super-resolved images without any training data. PEM-SIM represents each spatial coordinate as a combination of sinusoidal functions across multiple frequencies, enabling rich encoding of fine spatial detail. A forward model grounded in SIM image …

Design And Analysis Of Modern Quantum Neural Network Architectures For Intelligent Systems, Lakshmi Chandrakanth Kasireddy, Prabhakara Rao Kapula, Dineshkumar Rajendran, Neha Bharani, Srikanth Pulipeti, Islombek Khushvaktov

Computer Science Faculty Publications

Quantum neural networks (QNNs) offer a principled pathway for integrating quantum computation with machine learning through superposition- and entanglement-based representations. This chapter proposes an architecture-aware design and evaluation framework for modern QNNs, emphasizing robustness and system feasibility alongside predictive performance. Multiple architectures variational QNNs, quantum convolutional neural networks, tensor-network hybrids, and fully quantum models—are assessed under a unified protocol. Experimental analysis shows that the proposed architecture-search–guided QNN achieves 91.8% classification accuracy and an F1-score of 0.914, outperforming fixed-template variational QNNs by approximately 5.6 percentage points. Under depolarizing noise with probability p = 0.10, the proposed model retains 85.3% accuracy, whereas …

Quantum Machine Learning Models: Principles, Frameworks, And Computational Challenges, K. A. Jayabalaji, S. Venkata Anand, Dineshkumar Rajendran, Prasanta Chatterjee Biswas, Sardor Omonov, Rubaid Ashfaq

Computer Science Faculty Publications

Quantum machine learning (QML) has become an optimistic avenue of harnessing quantum computation in data-driven modeling, especially of issues with high dimensionality and complicated correlations. Current methods are generally based on fixed or over-parameterized quantum circuits, and hence restricted to scalability as well as unproductive optimization in real-world hardware. This chapter introduces a hybrid quantum-classical learning system that is adaptive and provides principled quantum data encoding, architecture-conscious variational circuit design and resource-optimal optimization. The technique is based on the concepts of quantum architecture search and subspace-preserving transformations to trade expressiveness with trainability, and discretize the quantum model into a classical …

Framework For Task Offloading In O-Ran Architecture For Heterogeneous Computing Applications, Samira Taheri, Neda Moghim, Naser Movahhedinia, Sachin Shetty

Center for Secure and Intelligent Critical Systems (CSICS) Publications

Computational offloading transfers tasks from resource-constrained devices to more capable servers or cloud platforms, improving processing speed and user experience. Open radio access networks (O-RAN's) disaggregated architecture and open interfaces make it suitable for offloading delay-sensitive tasks, enhancing real-time application performance. This study focuses on task offloading in O-RAN, a reference network architecture. Although research on O-RAN is limited, existing work lacks a comprehensive approach to offloading, including offloading layer determination, node selection, and resource allocation based on task types and their latency needs. We propose a delay-aware task offloading framework within O-RAN to support diverse delay requirements, improving offloading …

Trigonometric Continuous-Variable Gates And Hybrid Quantum Simulations Of The Sine-Gordon Model, Tommaso Rainaldi, Victor Ale, Matt Grau, Dmitri Kharzeev, Enrique Rico, Felix Ringer, Pubasha Shome, George Siopsis

Physics Faculty Publications

Hybrid qubit-qumode quantum computing platforms provide a natural setting for simulating interacting bosonic quantum field theories. However, existing continuous-variable gate constructions rely predominantly on polynomial functions of canonical quadratures. In this work, we introduce a complementary universality paradigm based on trigonometric continuous-variable gates, which enable a Fourier-like representation of bosonic operators and are particularly well suited for periodic and non-perturbative interactions. We present an ancilla-based framework for implementing trigonometric gates with arguments given by arbitrary Hermitian functions of qumode quadratures. The protocol yields unitary gates deterministically, and non-unitary gates through probabilistic post-selection. As a concrete application, we develop a hybrid …

Cogram: A Computational Pipeline For Genome Assembly And Reconstruction Using Graph Neural Networks, William Coggins

College of Graduate Studies: Theses & Dissertations

Genome assembly — the reconstruction of a complete DNA sequence from short, overlapping reads — remains a fundamental challenge in computational biology. A central difficulty is distinguishing true genomic overlaps from spurious connections arising from repetitive sequences, a task that traditional assemblers address through hand-tuned heuristic rules applied to de Bruijn or overlap graphs. This thesis introduces COGRAM (Coggins–Ramasamy Assembly Method), a genome assembly pipeline that reframes sequence reconstruction as an edge classification task on a k-mer overlap graph, replacing heuristic graph cleaning with a learned model.

COGRAM constructs a directed overlap graph from raw sequencing reads using a k-mer …

Error-Driven Density Control For Compact Gaussian Splatting Under Sparse Supervision, Abdelrhman Elrawy

Theses and Dissertations (Comprehensive)

This thesis studies efficiency and stability challenges in Gaussian-splatting-based reconstruction under sparse supervision. In few-shot novel view synthesis, standard 3D Gaussian Splatting (3DGS) can overfit the limited training views and grow an unnecessarily large number of primitives due to limitations in its Adaptive Density Control (ADC) mechanism. This thesis introduces an error-driven reformulation of ADC that triggers densification using opacity gradients as a lightweight proxy for rendering error, and shows that such aggressive densification must be paired with delayed and conservative pruning to prevent destructive create--destroy cycles. When combined with depth-based geometric regularization, the resulting framework produces substantially more compact …

Geovig And Purevig: Geometry-Aware Architectures For Efficient Computer Vision, Omar Ismail

Theses and Dissertations (Comprehensive)

Deploying deep learning models for medical image analysis on mobile devices requires a balance between inference latency, memory footprint, and delineating anatomical boundaries with high accuracy. While Convolutional Neural Networks (CNNs) and mobile Vision Transformers (ViTs) offer efficiency, they often struggle to model the irregular, non-local geometric structures inherent in biological tissues without incurring prohibitive computational costs. In this thesis, we introduce GeoViG (Geometric Vision Graph), an architecture that bridges the gap between efficient grid-based processing and explicit Geometric Deep Learning. GeoViG introduces a novel transition from high-resolution pixel grids to low-resolution dynamic graphs via a SpreadEdgePool operator, a geometry-aware …