Changes On Cran,
2017
WU Wirtschaftsuniversität Wien
Changes On Cran, Kurt Hornik, Uwe Ligges, Achim Zeileis
The R Journal
In the past 6 months,1244 new packages were added to the CRAN package repository. 19 packages were unarchived, 55 archived and 3 removed. The following shows the growth of the number of active packages in the CRAN package repository
Splitting It Up: The Spduration Split-Population Duration Regression Package For Time-Varying Covariates,
2017
Ward Associates / Predictive Heuristics
Splitting It Up: The Spduration Split-Population Duration Regression Package For Time-Varying Covariates, Andreas Beger, Daniel W. Hill Jr, Nils W. Metternich, Shahryar Minhas, Michael D. Ward
The R Journal
We present an implementation of split-population duration regression in the spduration (Beger et al., 2017) package for R that allows for time-varying covariates. The statistical model accounts for units that are immune to a certain outcome and are not part of the duration process the researcher is primarily interested in. We provide insights for when immune units exist, that can significantly increase the predictive performance compared to standard duration models. The package includes estimation and several post-estimation methods for split-population Weibull and log-logistic models. Weprovide an empirical application to data on military coups.
Partial Rank Data With The Hyper2 Package: Likelihood Functions For Generalized Bradley-Terry Models,
2017
AUT University
Partial Rank Data With The Hyper2 Package: Likelihood Functions For Generalized Bradley-Terry Models, Robin K. S Hankin
The R Journal
Here I present the hyper2 package for generalized Bradley-Terry models and give examples from two competitive situations: single scull rowing, and the competitive cooking game show Master Chef Australia. A number of natural statistical hypotheses may be tested straightforwardly using the software.
Riskregression: Predicting The Risk Of An Event Using Cox Regression Models,
2017
University of Copenhagen
Riskregression: Predicting The Risk Of An Event Using Cox Regression Models, Brice Ozenne, Anne Lyngholm Sørensen, Thomas Scheike, Christian Torp-Pedersen, Thomas Alexander Gerds
The R Journal
In the presence of competing risks a prediction of the time-dynamic absolute risk of an event can be based on cause-specific Cox regression models for the event and the competing risks (Benichou and Gail, 1990). We present computationally fast and memory optimized C++functions with an R inter face for predicting the covariate specific absolute risks, their confidence intervals, and their confidence bands based on right censored time to event data. We provide explicit formulas for our implementation of the estimator of the (stratified) baseline hazard function in the presence of tied event times. As a by-product we obtain fast access …
Anomalydetection: Implementation Of Augmented Network Log Anomaly Detection Procedures,
2017
Air Force Institute of Technology
Anomalydetection: Implementation Of Augmented Network Log Anomaly Detection Procedures, Robert J. Gutierrez, Bradley C. Boehmke, Air Force Institute Of Technology, Cade M. Saie, Trevor J. Bihl
The R Journal
As the number of cyber-attacks continues to grow on a daily basis, so does the delay in threat detection. For instance, in 2015, the Office of Personnel Management discovered that approximately 21.5 million individual records of Federal employees and contractors had been stolen. On average, the time between an attack and its discovery is more than 200 days. In the case of the OPM breach, the attack had been going on for almost a year. Currently, cyber analysts inspect numerous potential incidents on a daily basis, but have neither the time nor the resources available to perform such a task. …
Liureg: A Comprehensive R Package For The Liu Estimation Of Linear Regression Model With Collinear Regressors,
2017
Bahauddin Zakariya University, Multan
Liureg: A Comprehensive R Package For The Liu Estimation Of Linear Regression Model With Collinear Regressors, Muhammad Imdadullah, Muhammad Aslam, Saima Altaf
The R Journal
The Liu regression estimator is now a commonly used alternative to the conventional ordinary least squares estimator that avoids the adverse effects in the situations when there exists a considerable degree of multicollinearity among the regressors. There are only a few software packages available for estimation of the Liu regression coefficients, though with limited methods to estimate the Liu biasing parameter without addressing testing procedures. Our liureg package can be used to estimate the Liu regression coefficients utilizing a range of different existing biasing parameters, to test these coefficients with more than 15 Liu related statistics, and to present different …
Ider: Intrinsic Dimension Estimation With R,
2017
University of Tsukuba
Ider: Intrinsic Dimension Estimation With R, Hideitsu Hino
The R Journal
In many data analyses, the dimensionality of the observed data is high while its intrinsic dimension remains quite low. Estimating the intrinsic dimension of an observed dataset is an essential preliminary step for dimensionality reduction, manifold learning, and visualization. This paper introduces an R package, named ider, that implements eight intrinsic dimension estimation methods, including a recently proposed method based on a second-order expansion of a probability mass function and a generalized linear model. The usage of each function in the package is explained with datasets generated using a function that is also included in the package
Furniture For Quantitative Scientists,
2017
Utah State University
Furniture For Quantitative Scientists, Tyson S. Barrett, Emily Brignone
The R Journal
A basic understanding of the distributions of study variables and the relationships among them is essential to inform statistical modeling. This understanding is achieved through the computation of summary statistics and exploratory data analysis. Unfortunately, this step tends to be under-emphasized in the research process, in part because of the often tedious nature of thorough exploratory data analysis. The table1() function in the furniture package streamlines much of the exploratory data analysis process, making the computation and communication of summary statistics simple and beautiful while offering significant time-savings to the researcher
Crtgeedr: An R Package For Doubly Robust Generalized Estimating Equations Estimations In Cluster Randomized Trials With Missing Data,
2017
Harvard T.H. Chan School of Public Health, INRIA
Crtgeedr: An R Package For Doubly Robust Generalized Estimating Equations Estimations In Cluster Randomized Trials With Missing Data, Melanie Prague, Rui Wang, Victor De Gruttola
The R Journal
Semi-parametric approaches based on generalized estimating equations (GEE) are widely used to analyze correlated outcomes in longitudinal settings. In this paper, we present a package CRTgeeDR developed for cluster randomized trials with missing data (CRTs). For use of inverse probability weighting to adjust for missing data in cluster randomized trials, we show that other software lead to biased estimation for non-independence working correlation structure. CRTgeeDR solves this problem. We also extend the ability of existing packages to allow augmented Doubly Robust GEEestimation (DR). Simulation studies demonstrate the consistency of estimators implemented in CRTgeeDR compared to packages such as geepack and …
Queueing: A Package For Analysis Of Queueing Networks And Models In R,
2017
Universidad de Granada
Queueing: A Package For Analysis Of Queueing Networks And Models In R, Pedro Cañadilla Jiménez, Yolanda Román Montoya
The R Journal
queueing is a package that solves and provides the main performance measures for both basic Markovian queueing models and single and multiclass product-form queueing networks. It can be used both in education and for professional purposes. It provides an intuitive, straightforward wayto build queueing models using S3 methods. The package solves Markovian models of the form M/M/c/K/M/FCFS, open and closed single class Jackson networks, open and closed multiclass networks and mixed networks. Markovian models are used when both the customer inter-arrival time and the server processing time are exponentially distributed. Queueing network solvers are useful for modelling situations in which …
Allele Imputation And Haplotype Determination From Databases Composed Of Nuclear Families,
2017
University of Las Palmas de Gran Canaria
Allele Imputation And Haplotype Determination From Databases Composed Of Nuclear Families, Nathan Medina-Rodríguez, Ángelo Santana
The R Journal
The alleHap package is designed for imputing genetic missing data and reconstruct non recombinant haplotypes from pedigree databases in a deterministic way. When genotypes of related individuals are available in a number of linked genetic markers, the program starts by identifying haplotypes compatible with the observed genotypes in those markers without missing values. If haplotypes are identified in parents or offspring, missing alleles can be imputed in subjects containing missing values. Several scenarios are analyzed: family completely genotyped, children partially genotyped and parents completely genotyped, children fully genotyped and parents containing entirely or partially missing genotypes, and founders and their …
Fourierin: An R Package To Compute Fourier Integrals,
2017
Iowa State University
Fourierin: An R Package To Compute Fourier Integrals, Guillermo Basulto-Elias, Alicia Carriquiry, Kris De Brabanter, Daniel J. Nordman
The R Journal
We present the R package fourierin (Basulto-Elias, 2017) for evaluating functions defined as Fourier-type integrals over a collection of argument values. The integrals are finitely supported with integrands involving continuous functions of one or two variables. As an important application, such Fourier integrals arise in so-called “inversion formulas”, where one seeks to evaluate a probability density at a series of points from a given characteristic function (or vice versa) through Fourier transforms. This paper intends to fill a gap in current R software, where tools for repeated evaluation of functions as Fourier integrals are not directly available. We implement two …
Anchoreddistr: A Package For The Bayesian Inversion Of Geostatistical Parameters With Multi-Type And Multi-Scale Data,
2017
University of California, Berkeley
Anchoreddistr: A Package For The Bayesian Inversion Of Geostatistical Parameters With Multi-Type And Multi-Scale Data, Heather Savoy, Falk Heße, Yoram Rubin
The R Journal
The Method of Anchored Distributions (MAD) is a method for Bayesian inversion designed for inferring both local (e.g. point values) and global properties (e.g. mean and variogram parameters) of spatially heterogenous fields using multi-type and multi-scale data. Software implementations of MAD exist in C++ and C# to import data, execute an ensemble of forward model simulations, and perform basic post-processing of calculating likelihood and posterior distributions for a given application. This article describes the R package anchoredDistr that has been built to provide an R based environment for this method. In particular, anchoredDistr provides a range of post-processing capabilities for …
Editorial,
2017
R Project
Editorial, Roger Bivand
The R Journal
In my editorial for the 2017–1 issue, I concentrated on tabulating the status of this journal with respect to its authors and reviewers (updated tables below). This time, I was prompted by an interesting blog posting by Jan Wijffels of BNOSAC, describing the use of the udpipe package to apply natural language processing (NLP) to the CRAN package database available from tools::CRAN_package_db() since the release of R 3.4. The interactive NLP searcher is a dashboard permitting exploration of annotated CRAN package title and description NLP data.
Software Reengineering: Reverse Engineering With Using 4+1 Architectural Views And Forward Engineering With Mvc Architecture,
2017
Southern Illinois University Carbondale
Software Reengineering: Reverse Engineering With Using 4+1 Architectural Views And Forward Engineering With Mvc Architecture, Shane Mueller
ASA Multidisciplinary Research Symposium
As software complexity is increasing exponentially in our modern era, software architecture becomes increasingly important. The separation of concerns through architecture allows each programmer the opportunity to limit their need of understanding to only the portion of code for which they are responsible for, thus saving large amounts of time.
Sudoku App: Model-Driven Development Of Android Apps Using Ocl?,
2017
The University of Texas at El Paso
Sudoku App: Model-Driven Development Of Android Apps Using Ocl?, Yoonsik Cheon, Aditi Barua
Departmental Technical Reports (CS)
Model driven development (MDD) shifts the focus of software development from writing code to building models by developing an application as a series of transformations on models including eventual code generation. Can the key ideas of MDD be applied to the development of Android apps, one of the most popular mobile platforms of today? To answer this question, we perform a small case study of developing an Android app for playing Sudoku puzzles. We use the Object Constraint Language (OCL) as the notation for creating precise models and translate OCL constraints to Android Java code. Our findings are mixed in …
A Semantics Comparison Workbench For A Concurrent, Asynchronous, Distributed Programming Language,
2017
Singapore Management University
A Semantics Comparison Workbench For A Concurrent, Asynchronous, Distributed Programming Language, Claudio Corrodi, Alexander Heußner, Christopher M. Poskitt
Research Collection School Of Computing and Information Systems
A number of high-level languages and libraries have been proposed that offer novel and simple to use abstractions for concurrent, asynchronous, and distributed programming. The execution models that realise them, however, often change over time---whether to improve performance, or to extend them to new language features---potentially affecting behavioural and safety properties of existing programs. This is exemplified by SCOOP, a message-passing approach to concurrent object-oriented programming that has seen multiple changes proposed and implemented, with demonstrable consequences for an idiomatic usage of its core abstraction. We propose a semantics comparison workbench for SCOOP with fully and semi-automatic tools for analysing …
The Impact Of Coverage On Bug Density In A Large Industrial Software Project,
2017
Heidelberg University
The Impact Of Coverage On Bug Density In A Large Industrial Software Project, Thomas Bach, Artur Andrzejak, Ralf Pannemans, David Lo
Research Collection School Of Computing and Information Systems
Measuring quality of test suites is one of the major challenges of software testing. Code coverage identifies tested and untested parts of code and is frequently used to approximate test suite quality. Multiple previous studies have investigated the relationship between coverage ratio and test suite quality, without a clear consent in the results. In this work we study whether covered code contains a smaller number of future bugs than uncovered code (assuming appropriate scaling). If this correlation holds and bug density is lower in covered code, coverage can be regarded as a meaningful metric to estimate the adequacy of testing. …
On Locating Malicious Code In Piggybacked Android Apps,
2017
University of Luxembourg
On Locating Malicious Code In Piggybacked Android Apps, Li Li, Daoyuan Li, Tegawende F. Bissyande, Jacques Klein, Haipeng Cai, David Lo, Yves Le Traon
Research Collection School Of Computing and Information Systems
To devise efficient approaches and tools for detecting malicious packages in the Android ecosystem, researchers are increasingly required to have a deep understanding of malware. There is thus a need to provide a framework for dissecting malware and locating malicious program fragments within app code in order to build a comprehensive dataset of malicious samples. Towards addressing this need, we propose in this work a tool-based approach called HookRanker, which provides ranked lists of potentially malicious packages based on the way malware behaviour code is triggered. With experiments on a ground truth of piggybacked apps, we are able to automatically …
Defaultification Refactoring: A Tool For Automatically Converting Java Methods To Default,
2017
CUNY Hunter College
Defaultification Refactoring: A Tool For Automatically Converting Java Methods To Default, Raffi Khatchadourian, Hidehiko Masuhara
Publications and Research
Enabling interfaces to declare (instance) method implementations, Java 8 default methods can be used as a substitute for the ubiquitous skeletal implementation software design pattern. Performing this transformation on legacy software manually, though, may be non-trivial. The refactoring requires analyzing complex type hierarchies, resolving multiple implementation inheritance issues, reconciling differences between class and interface methods, and analyzing tie-breakers (dispatch precedence) with overriding class methods. All of this is necessary to preserve type-correctness and confirm semantics preservation. We demonstrate an automated refactoring tool called Migrate Skeletal Implementation to Interface for transforming legacy Java code to use the new default construct. The …
