Programming Languages and Compilers Commons^™

Snowboot: Bootstrap Methods For Network Inference, Yuzhou Chen, Yulia R. Gel, Vyacheslav Lyubchich, Kusha Nezafati

The R Journal

Complex networks are used to describe a broad range of disparate social systems and natural phenomena, from power grids to customer segmentation to human brain connectome. Challenges of parametric model specification and validation inspire a search for more data-driven and flexible nonparametric approaches for inference of complex networks. In this paper we discuss methodology and R implementation of two bootstrap procedures on random networks, that is, patchwork bootstrap of Thompson et al. (2016) and Gel et al. (2017) and vertex bootstrap of Snijders and Borgatti (1999). To our knowledge, the new R package snowboot is the first implementation of the …

R Foundation News, Torsten Hothorn

The R Journal

Donations and members

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Supporting benefactors

Supporting institutions

Supporting members

Rcppmsgpack: Messagepack Headers And Interface Functions For R, Travers Ching, Dirk Eddelbuettel

The R Journal

MessagePack, or MsgPack for short, or when referring to the implementation, is an efficient binary serialization format for exchanging data between different programming languages. The RcppMsgPack package provides R with both the MessagePack C++ header files, and the ability to access, create and alter MessagePack objects directly from R. The main driver functions of the R interface are two functions msgpack_pack and msgpack_unpack. The function msgpack_pack serializes Robjects to a raw MessagePack message. The function msgpack_unpack de-serializes MessagePack messages back into R objects. Several helper functions are available to aid in processing and formatting data including msgpack_simplify, msgpack_format and msgpack_map

News From The Bioconductor Project, Bioconductor Core Team

The R Journal

The Bioconductor project provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor 3.8 was released on 31 October, 2018. It is compatible with R 3.5.2 and consists of 1649 software packages, 360 experiment data packages, and 941 up-to-date annotation packages. The release announcement includes descriptions of 95 new software packages and updated NEWS files for many additional packages.

Changes On Cran, Kurt Hornik, Uwe Ligges, Achim Zeileis

The R Journal

In the past 6 months, 1029 new packages were added to the CRAN package repository. 68 packages were unarchived, 122 archived, and one removed. The following shows the growth of the number of active packages in the CRAN package repository

Conference Report: Latinr 2018, Laura Acion, Natalia Da Silva, Riva Quiroga

The R Journal

LatinR <- Latin American Conference about the Use of R in Research + Development (LatinR) was an international conference whose goal was bringing together the Latin Ameri can R community. The inagural LatinR took place at the Universidad de Palermo in Buenos Aires, Argentina, on September 3 to 5, 2018. About 100 participants from more than 10 differ ent countries (e.g., Argentina, Uruguay, Chile, Peru, Ecuador, Brazil, Costa Rica, Venezuela, Spain, United States, Canada) attended LatinR.

LatinR will be an annual meeting that will rotate among different countries in Latin America. LatinR 2019 will be hosted by the Universidad Católica de Chile in Santiago de Chile on September 25 to 27

Conference Report: Ser Iii, Ariel Levy, Luciane F. Alcoforado, Orlando Celso Longo

The R Journal

SER is a multidisciplinary event, which integrates professionals, students, and practioners from most diversified knowledge areas who make use of data analysis. The first edition took place on May 2016 as the initiative of a group of professors from the Fluminense Federal University, partners of other Institutions, and was supported by CAPES (Coordination for higher Education Staff Development). SER event was recognized by the R foundation (2018)1 for its pioneering in Latin America in bringing together an expressive number of R users.

Conference Report: R / Pharma 2018, Joseph Rickert

The R Journal

The R / Pharma conference began as grass-roots initiative led by data scientists working in the pharmaceutical industry to promote the use of R in Pharma, and to establish and share best practices. The founding members organized the project as an R Consortium working group, and undertook the ambitious task of launching an annual conference envisioned as a relatively small, collegial, industry-oriented event with a strong scientific program.

The Politeness Package: Detecting Politeness In Natural Language, Michael Yeomans, Alejandro Kantor, Dustin Tingley

The R Journal

This package provides tools to extract politeness markers in English natural language. It also allows researchers to easily visualize and quantify politeness between groups of documents. This package combines and extends prior research on the linguistic markers of politeness (Brown and Levinson, 1987; Danescu-Niculescu-Mizil et al., 2013; Voigt et al., 2017). We demonstrate two applications for detecting politeness in natural language during consequential social interactions— distributive negotiations, and speed dating.

Rfsa: An R Package For Finding Best Subsets And Interactions, Joshua Lambert, Liyu Gong, Corrine F. Elliott, Katherine Thompson, Arnold Stromberg

The R Journal

Herein we present the R package rFSA, which implements an algorithm for improved variable selection. The algorithm searches a data space for models of a user-specified form that are statistically optimal under a measure of model quality. Many iterations afford a set of feasible solutions (or candidate models) that the researcher can evaluate for relevance to his or her questions of interest. The algorithm can be used to formulate new or to improve upon existing models in bioinformatics, health care, and myriad other fields in which the volume of available data has outstripped researchers’ practical and computational ability to explore …

Ggplot2 Compatible Quantile-Quantile Plots In, Alexandre Almeida, Adam Loy, Heike Hofmann

The R Journal

Q-Q plots allow us to assess univariate distributional assumptions by comparing a set of quantiles from the empirical and the theoretical distributions in the form of a scatterplot. To aid in the interpretation of Q-Q plots, reference lines and confidence bands are often added. We can also detrend the Q-Q plot so the vertical comparisons of interest come into focus. Various implementations of Q-Q plots exist in R, but none implements all of these features. qqplotr extends ggplot2 to provide a complete implementation of Q-Q plots. This paper introduces the plotting framework provided by qqplotr and provides multiple examples of …

Smm: An R Package For Estimation And Simulation Of Discrete-Time Semi-Markov Models, Vlad Stefan Barbu, Caroline Bérard, Dominique Cellier, Mathilde Sautreuil, Nicolas Vergne

The R Journal

Semi-Markov models, independently introduced by Lévy (1954), Smith (1955) and Takacs (1954), are a generalization of the well-known Markov models. For semi-Markov models, sojourn times can be arbitrarily distributed, while sojourn times of Markov models are constrained to be exponentially distributed (in continuous time) or geometrically distributed (in discrete time). The aim of this paper is to present the R package SMM, devoted to the simulation and estimation of discrete-time multi-state semi-Markov and Markov models. For the semi-Markov case we have considered: parametric and non-parametric estimation; with and without censoring at the beginning and/or at the end of sample …

Lmridge: A Comprehensive R Package For Ridge Regression, Muhammad Imdad Ullah, Bahauddin Zakariya University Aslam, Saima Atlaf

The R Journal

The ridge regression estimator, one of the commonly used alternatives to the conventional ordinary least squares estimator, avoids the adverse effects in the situations when there exists some considerable degree of multicollinearity among the regressors. There are many software packages available for estimation of ridge regression coefficients. However, most of them display limited methods to estimate the ridge biasing parameters without testing procedures. Our developed package, lmridge can be used to estimate ridge coefficients considering a range of different existing biasing parameters, to test these coefficients with more than 25 ridge related statistics, and to present different graphical displays of …

Effectiveness Of Physical Robot Versus Robot Simulator In Teaching Introductory Programming, Oka Kurniawan, Norman Tiong Seng Lee, Subhajit Datta, Nachamma Sockalingam, Pey Lin Leong

Research Collection School Of Computing and Information Systems

This study reports the use of a physical robot and robot simulator in an introductory programming course in a university and measures students' programming background conceptual learning gain and learning experience. One group used physical robots in their lessons to complete programming assignments, while the other group used robot simulators. We are interested in finding out if there is any difference in the learning gain and experiences between those that use physical robots as compared to robot simulators. Our results suggest that there is no significant difference in terms of students' learning between the two approaches. However, the control group …

An Architectural Design And Evaluation Of An Affective Tutoring System For Novice Programmers, Hua Leong Fwa

Research Collection School Of Computing and Information Systems

Affect is prevalent in learning and it influences students’ learning achievement. This paper details the design and evaluation of an Affective Tutoring System (ATS) that tutors student in computer programming. Although most ATSs are purpose built for a specific domain, making adaptation to another domain difficult, this ATS is architected for adaptability and extensibility. This study also addresses a lack of research exploring the theories and methods of integrating affect and learning within the learning process by proposing methods of regulating the negative affect of students. Both quantitative and qualitative techniques were used for evaluation of the effectiveness of the …

Perflearner: Learning From Bug Reports To Understand And Generate Performance Test Frames, Xue Han, Tingting Yu, David Lo

Research Collection School Of Computing and Information Systems

Software performance is important for ensuring the quality of software products. Performance bugs, defined as programming errors that cause significant performance degradation, can lead to slow systems and poor user experience. While there has been some research on automated performance testing such as test case generation, the main idea is to select workload values to increase the program execution times. These techniques often assume the initial test cases have the right combination of input parameters and focus on evolving values of certain input parameters. However, such an assumption may not hold for highly configurable real-word applications, in which the combinations …

Towards Automated Domain-Oriented Lexicon Construction And Dimension Reduction For Arabic Sentiment Analysis, Hasan A. Alshahrani

Dissertations

Sentiment analysis is a type of text mining that uses Natural Language Processing (NLP) tools to identify and label opinionated text. There are two main approaches of sentiment analysis: lexicon-based, and statistical approach. In our research, we use the lexicon-based approach because the lexicon contains sentiment words and phrases which are the main linguistic units to express sentiments. More specifically, we work with domain-oriented lexicons as they are more efficient than general ones because the polarity is heavily driven by domains.

Arabic language has a degree of uniqueness that makes it hard to be processed with the available cross-language tools …

Infar: Insight Extraction From App Reviews, Cuiyun Gao, Jichuan Zeng, David Lo, Chin-Yew Lin, Michael R. Lyu, Irwin King

Research Collection School Of Computing and Information Systems

App reviews play an essential role for users to convey their feedback about using the app. The critical information contained in app reviews can assist app developers for maintaining and updating mobile apps. However, the noisy nature and large-quantity of daily generated app reviews make it difficult to understand essential information carried in app reviews. Several prior studies have proposed methods that can automatically classify or cluster user reviews into a few app topics (e.g., security). These methods usually act on a static collection of user reviews. However, due to the dynamic nature of user feedback (i.e., reviews keep coming …

Vt-Revolution: Interactive Programming Tutorials Made Possible, Lingfeng Bao, Zhenchang Xing, Xin Xia, David Lo, Shanping Li

Research Collection School Of Computing and Information Systems

Programming video tutorials showcase programming tasks and associated workflows. Although video tutorials are easy to create, it isoften difficult to explore the captured workflows and interact withthe programs in the videos. In this work, we propose a tool named VTRevolution – an interactive programming video tutorial authoring system. VTRevolution has two components: 1) a tutorial authoring system leverages operating system level instrumentation to log workflow history while tutorial authors are creating programming video tutorials; 2) a tutorial watching system enhances the learning experience of video tutorials by providing operation history and timeline-based browsing interactions. Our tutorial authoring system does not …

Dsm: A Specification Mining Tool Using Recurrent Neural Network Based Language Model, Tien-Duy B. Le, Lingfeng Bao, David Lo

Research Collection School Of Computing and Information Systems

Formal specifications are important but often unavailable. Furthermore, writing these specifications is time-consuming and requires skills from developers. In this work, we present Deep Specification Miner (DSM), an automated tool that applies deep learning to mine finite-state automaton (FSA) based specifications. DSM accepts as input a set of execution traces to train a Recurrent Neural Network Language Model (RNNLM). From the input traces, DSM creates a Prefix Tree Acceptor (PTA) and leverages the inferred RNNLM to extract many features. These features are then forwarded to clustering algorithms for merging similar automata states in the PTA for assembling a number of …