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Facilitating Team-Based Data Science: Lessons Learned From The Dsc-Wav Project, Chelsey Legacy, Andrew Zieffler, Benjamin S. Baumer, Valerie Barr, Nicholas J. Horton 2021 University of Minnesota

Facilitating Team-Based Data Science: Lessons Learned From The Dsc-Wav Project, Chelsey Legacy, Andrew Zieffler, Benjamin S. Baumer, Valerie Barr, Nicholas J. Horton

Statistical and Data Sciences: Faculty Publications

While coursework provides undergraduate data science students with some relevant analytic skills, many are not given the rich experiences with data and computing they need to be successful in the workplace. Additionally, students often have limited exposure to team-based data science and the principles and tools of collaboration that are encountered outside of school. In this paper, we describe the DSC-WAV program, an NSF-funded data science workforce development project in which teams of undergraduate sophomores and juniors work with a local non-profit organization on a data-focused problem. To help students develop a sense of agency and improve confidence in their …


Masked Face Analysis Via Multi-Task Deep Learning, Vatsa S. Patel, Zhongliang Nie, Trung-Nghia Le, Tam Van Nguyen 2021 University of Dayton

Masked Face Analysis Via Multi-Task Deep Learning, Vatsa S. Patel, Zhongliang Nie, Trung-Nghia Le, Tam Van Nguyen

Computer Science Faculty Publications

Face recognition with wearable items has been a challenging task in computer vision and involves the problem of identifying humans wearing a face mask. Masked face analysis via multi-task learning could effectively improve performance in many fields of face analysis. In this paper, we propose a unified framework for predicting the age, gender, and emotions of people wearing face masks. We first construct FGNET-MASK, a masked face dataset for the problem. Then, we propose a multi-task deep learning model to tackle the problem. In particular, the multi-task deep learning model takes the data as inputs and shares their weight to …


Internet Of Things Software And Hardware Architectures And Their Impacts On Forensic Investigations: Current Approaches And Challenges, Abel Alex Boozer, Arun John, Tathagata Mukherjee 2021 University of Alabama, Huntsville

Internet Of Things Software And Hardware Architectures And Their Impacts On Forensic Investigations: Current Approaches And Challenges, Abel Alex Boozer, Arun John, Tathagata Mukherjee

Journal of Digital Forensics, Security and Law

The never-before-seen proliferation of interconnected low-power computing devices, patently dubbed the Internet of Things (IoT), is revolutionizing how people, organizations, and malicious actors interact with one another and the Internet. Many of these devices collect data in different forms, be it audio, location data, or user commands. In civil or criminal nature investigations, the data collected can act as evidence for the prosecution or the defense. This data can also be used as a component of cybersecurity efforts. When data is extracted from these devices, investigators are expected to do so using proven methods. Still, unfortunately, given the heterogeneity in …


Infer: An R Package For Tidyverse-Friendly Statistical Inference, Simon P. Couch, Andrew P. Bray, Chester Ismay, Evgeni Chasnovski, B. Baumer, Mine Cetinkaya-Rundel 2021 Johns Hopkins University

Infer: An R Package For Tidyverse-Friendly Statistical Inference, Simon P. Couch, Andrew P. Bray, Chester Ismay, Evgeni Chasnovski, B. Baumer, Mine Cetinkaya-Rundel

Statistical and Data Sciences: Faculty Publications

infer implements an expressive grammar to perform statistical inference that adheres to the tidyverse design framework (Wickham et al., 2019). Rather than providing methods for specific statistical tests, this package consolidates the principles that are shared among common hypothesis tests and confidence intervals into a set of four main verbs (functions), supplemented with many utilities to visualize and extract value from their outputs.


The Development Of Teaching Case Studies To Explore Ethical Issues Associated With Computer Programming, Michael Collins, Damian Gordon, Dympna O'Sullivan 2021 Technological University Dublin

The Development Of Teaching Case Studies To Explore Ethical Issues Associated With Computer Programming, Michael Collins, Damian Gordon, Dympna O'Sullivan

Conference papers

In the past decade software products have become pervasive in many aspects of people’s lives around the world. Unfortunately, the quality of the experience an individual has interacting with that software is dependent on the quality of the software itself, and it is becoming more and more evident that many large software products contain a range of issues and errors, and these issues are not known to the developers of these systems, and they are unaware of the deleterious impacts of those issues on the individuals who use these systems. The authors of this paper are developing a new digital …


An Empirical Study Of Thermal Attacks On Edge Platforms, Tyler Holmes 2021 Kennesaw State University

An Empirical Study Of Thermal Attacks On Edge Platforms, Tyler Holmes

Symposium of Student Scholars

Cloud-edge systems are vulnerable to thermal attacks as the increased energy consumption may remain undetected, while occurring alongside normal, CPU-intensive applications. The purpose of our research is to study thermal effects on modern edge systems. We also analyze how performance is affected from the increased heat and identify preventative measures. We speculate that due to the technology being a recent innovation, research on cloud-edge devices and thermal attacks is scarce. Other research focuses on server systems rather than edge platforms. In our paper, we use a Raspberry Pi 4 and a CPU-intensive application to represent thermal attacks on cloud-edge systems. …


Energy Saving On Edges: State-Of-The-Art And Future Directions, Kousalya Banka 2021 Kennesaw State University

Energy Saving On Edges: State-Of-The-Art And Future Directions, Kousalya Banka

Symposium of Student Scholars

Internet of Things (IoT) comprises a set of devices that are interconnected ranging from our daily used objects to advanced networked devices. It is a constantly evolving phenomenon as the number of devices owned by the regular user is increasing at a rapid rate. These devices are used for various reasons such as social networking, monitoring, performing complex operations and with the increase of advanced technologies, they demand more energy to perform such tasks. Cloud computing enables these communications to seamlessly perform complex tasks in a cloud environment but utilizing these resources properly to perform at the best is the …


Enhancing Microbiome Host Disease Prediction With Variational Autoencoders, Celeste Manughian-Peter 2021 Chapman University

Enhancing Microbiome Host Disease Prediction With Variational Autoencoders, Celeste Manughian-Peter

Computational and Data Sciences (MS) Theses

Advancements in genetic sequencing methods for microbiomes in recent decades have permitted the collection of taxonomic and functional profiles of microbial communities, accelerating the discovery of the functional aspects of the microbiome and generating an increased interest among clinicians in applying these techniques with patients. This advancement has coincided with software and hardware improvements in the field of machine learning and deep learning. Combined, these advancements implicate further potential for progress in disease diagnosis and treatment in humans. The ability to classify a human microbiome profile into a disease category, and additionally identify the differentiating factors within the profile between …


Automated Parsing Of Flexible Molecular Systems Using Principal Component Analysis And K-Means Clustering Techniques, Matthew J. Nwerem 2021 Chapman University

Automated Parsing Of Flexible Molecular Systems Using Principal Component Analysis And K-Means Clustering Techniques, Matthew J. Nwerem

Computational and Data Sciences (MS) Theses

Computational investigation of molecular structures and reactions of biological and pharmaceutical interests remains a grand scientific challenge due to the size and conformational flexibility of these systems. The work requires parsing and analyzing thousands of conformations in each molecular state for meaningful chemical information and subjecting the ensemble to costly quantum chemical calculations. The current status quo typically involves a manual process where the investigator must look at each conformation, separating each into structural families. This process is time-intensive and tedious, making this process infeasible in some cases, and limiting the ability of theoreticians to study these systems. However, the …


Identification Of Chemical Structures And Substructures Via Deep Q-Learning And Supervised Learning Of Ftir Spectra, Joshua D. Ellis 2021 Missouri State University

Identification Of Chemical Structures And Substructures Via Deep Q-Learning And Supervised Learning Of Ftir Spectra, Joshua D. Ellis

Graduate Theses/Dissertations

Fourier-transform infrared (FTIR) spectra of organic compounds can be used to compare and identify compounds. A mid-FTIR spectrum gives absorbance values of a compound over the 400-4000 cm-1 range. Spectral matching is the process of comparing the spectral signature of two or more compounds and returning a value for the similarity of the compounds based on how closely their spectra match. This process is commonly used to identify an unknown compound by searching for its spectrum’s closes match in a database of known spectra. A major limitation of this process is that it can only be used to identify …


Verification Of Piecewise Deep Neural Networks: A Star Set Approach With Zonotope Pre-Filter, Hoang-Dung Tran, Neelanjana Pal, Diego Manzanas Lopez, Patrick Musau, Xiaodong Yang, Luan Viet Nguyen, Weiming Xiang, Stanley Bak, Taylor T. Johnson 2021 University of Nebraska

Verification Of Piecewise Deep Neural Networks: A Star Set Approach With Zonotope Pre-Filter, Hoang-Dung Tran, Neelanjana Pal, Diego Manzanas Lopez, Patrick Musau, Xiaodong Yang, Luan Viet Nguyen, Weiming Xiang, Stanley Bak, Taylor T. Johnson

Computer Science Faculty Publications

Verification has emerged as a means to provide formal guarantees on learning-based systems incorporating neural network before using them in safety-critical applications. This paper proposes a new verification approach for deep neural networks (DNNs) with piecewise linear activation functions using reachability analysis. The core of our approach is a collection of reachability algorithms using star sets (or shortly, stars), an effective symbolic representation of high-dimensional polytopes. The star-based reachability algorithms compute the output reachable sets of a network with a given input set before using them for verification. For a neural network with piecewise linear activation functions, our approach can …


Locating Identities In Time: An Examination Of The Impact Of Temporality On Presentations Of The Self Through Location-Based Social Networks, Konstantinos Papangelis, Ioanna Lykourentzou, Vassilis-Javed Khan, Alan Chamberlain, Ting Cao, Micahel Saker, Nicolas LaLone 2021 Rochester Institute of Technology

Locating Identities In Time: An Examination Of The Impact Of Temporality On Presentations Of The Self Through Location-Based Social Networks, Konstantinos Papangelis, Ioanna Lykourentzou, Vassilis-Javed Khan, Alan Chamberlain, Ting Cao, Micahel Saker, Nicolas Lalone

Articles

Studies of identity and location-based social networks (LBSN) have tended to focus on the performative aspects associated with marking one’s location. Yet, these studies often present this practice as being an a priori aspect of locative media. What is missing from this research is a more granular understanding of how this process develops over time. Accordingly, we focus on the first six weeks of 42 users beginning to use an LBSN we designed and named GeoMoments. Through our analysis of our users' activities, we contribute to understanding identity and LBSN in two distinct ways. First, we show how LBSN users …


Insights And Lessons Learned From The Design, Development And Deployment Of Pervasive Location-Based Mobile Systems “In The Wild”, Konstantinos Papangelis, Alan Chamberlain, Nicolas Lalone, Ting Cao 2021 Rochester Institute of Technology

Insights And Lessons Learned From The Design, Development And Deployment Of Pervasive Location-Based Mobile Systems “In The Wild”, Konstantinos Papangelis, Alan Chamberlain, Nicolas Lalone, Ting Cao

Presentations and other scholarship

This paper, based on a reflective approach, presents several insights and lessons learned from the design, development, and deployment of a location-based social network and a location-based game. These are analyzed and discussed against the life-cycle of our studies and range from engaging with the participants to dealing with technical issues while on the field. Overall, the insights and lessons learned illustrate that one should be prepared and flexible enough to accommodate any issues as they arise in a professional manner considering not only the results of the study but also the participants and the researchers involved.The aim of this …


Analysis Of The Slo Bay Microbiome From A Network Perspective, Lien Viet Nguyen 2021 California Polytechnic State University, San Luis Obispo

Analysis Of The Slo Bay Microbiome From A Network Perspective, Lien Viet Nguyen

Master's Theses

Microorganisms are key players in the ecosystem functioning. In this thesis, we developed a framework to preprocess raw microbiome data, build a correlation network, and analyze co-occurrence patterns between microbes. We then applied this framework to a marine microbiome dataset. The dataset used in this study comes from a year-long time-series to characterize the microbial communities in our coastal waters off the Cal Poly Pier. In analyzing this dataset, we were able to observe and confirm previously discovered patterns of interactions and generate hypotheses about new patterns. The analysis of co-occurrences between prokaryotic and eukaryotic taxa is relatively novel and …


Montage Music Videos: Racial Utopianism Vs. Abstract Cowboys And The Question Of Cultural Montage, Alan E. Blanchard 2021 University of South Florida

Montage Music Videos: Racial Utopianism Vs. Abstract Cowboys And The Question Of Cultural Montage, Alan E. Blanchard

USF Tampa Graduate Theses and Dissertations

Along with the explosion of consumer goods in America over the past century came the human impulse to alter these objects to produce new meanings the manufacturers never intended: commercial products become amateur artists’ raw material. We see this with custom cars and the curious blending of clothes. Inevitably, digital commercial products, like music videos, would undergo a similar treatment as seen in DJ Cummerbund’s “mashup” videos “Old Staind Road” and “Blurry in the USA” where he is painting with audio tracks and sculpting with video clips to create new digital art with new meanings uncoupled from industry’s original intent …


A Quantitative Validation Of Multi-Modal Image Fusion And Segmentation For Object Detection And Tracking, Nicholas LaHaye, Michael J. Garay, Brian D. Bue, Hesham el-Askary, Erik Linstead 2021 California Institute of Technology

A Quantitative Validation Of Multi-Modal Image Fusion And Segmentation For Object Detection And Tracking, Nicholas Lahaye, Michael J. Garay, Brian D. Bue, Hesham El-Askary, Erik Linstead

Mathematics, Physics, and Computer Science Faculty Articles and Research

In previous works, we have shown the efficacy of using Deep Belief Networks, paired with clustering, to identify distinct classes of objects within remotely sensed data via cluster analysis and qualitative analysis of the output data in comparison with reference data. In this paper, we quantitatively validate the methodology against datasets currently being generated and used within the remote sensing community, as well as show the capabilities and benefits of the data fusion methodologies used. The experiments run take the output of our unsupervised fusion and segmentation methodology and map them to various labeled datasets at different levels of global …


Case Study Of Scrum Methodology As Used By A Capstone Team, Lilly I. Yeaton 2021 Portland State University

Case Study Of Scrum Methodology As Used By A Capstone Team, Lilly I. Yeaton

University Honors Theses

Scrum is widely used in the software industry to manage all kinds of projects. This case study examines the way in which a capstone team used the methodology and models the specific project management processes they used over the course of their project. These models and the process modifications therein are then compared to the team’s velocity at different points in the project. The results of this analysis suggest a correlation between asynchronous daily meetings and sprint reviews and improved velocity.


Characterizing The Vibrational Spectra Of Hydrogen Bonded Systems With Molecular Dynamics Simulations And Quantum Chemical Methods, Dalton Boutwell 2021 Kennesaw State University

Characterizing The Vibrational Spectra Of Hydrogen Bonded Systems With Molecular Dynamics Simulations And Quantum Chemical Methods, Dalton Boutwell

Master of Science in Chemical Sciences Theses

We apply and assess the utility of DMD for the purpose of investigating complex spectral features in N2H+···OC, N2D+···OC, C2O4H-, C2O4D- and (HCOOH)2. The proton transfer as a vibrational motion consists of diffuse qualities that can be accounted for with classical and quantum chemical analyses. Classical approaches yield a wealth of information about vibrational spectra at a reduced cost, as in the case of previously investigated N4H+. The isoelectronic N2H+···OC has …


Adapting An Agent-Based Model Of Infectious Disease Spread In An Irish County To Covid-19, Elizabeth Hunter, John D. Kelleher 2021 Technological University Dublin

Adapting An Agent-Based Model Of Infectious Disease Spread In An Irish County To Covid-19, Elizabeth Hunter, John D. Kelleher

Articles

The dynamics that lead to the spread of an infectious disease through a population can be characterized as a complex system. One way to model such a system, in order to improve preparedness, and learn more about how an infectious disease, such as COVID-19, might spread through a population, is agent-based epidemiological modelling. When a pandemic is caused by an emerging disease, it takes time to develop a completely new model that captures the complexity of the system. In this paper, we discuss adapting an existing agent-based model for the spread of measles in Ireland to simulate the spread of …


Landscape-Based Mutational Sensitivity Cartography And Network Community Analysis Of The Sars-Cov-2 Spike Protein Structures: Quantifying Functional Effects Of The Circulating D614g Variant, Gennady M. Verkhivker, Steve Agajanian, Deniz Yasar Oztas, Grace Gupta 2021 Chapman University

Landscape-Based Mutational Sensitivity Cartography And Network Community Analysis Of The Sars-Cov-2 Spike Protein Structures: Quantifying Functional Effects Of The Circulating D614g Variant, Gennady M. Verkhivker, Steve Agajanian, Deniz Yasar Oztas, Grace Gupta

Mathematics, Physics, and Computer Science Faculty Articles and Research

We developed and applied a computational approach to simulate functional effects of the global circulating mutation D614G of the SARS-CoV-2 spike protein. All-atom molecular dynamics simulations are combined with deep mutational scanning and analysis of the residue interaction networks to investigate conformational landscapes and energetics of the SARS-CoV-2 spike proteins in different functional states of the D614G mutant. The results of conformational dynamics and analysis of collective motions demonstrated that the D614 site plays a key regulatory role in governing functional transitions between open and closed states. Using mutational scanning and sensitivity analysis of protein residues, we identified the stability …


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