Numerical Analysis and Scientific Computing Commons^™

Towards Smart Farming: Image-Based Crop Health Assessment And Disease Diagnosis Using Deep Learning Techniques, Kristina Botova

Master's Theses or Doctor of Nursing Practice

Accurate crop monitoring is essential for optimizing agricultural productivity and ensuring food security. This study presents a comprehensive deep learning framework for image crop type recognition, health status prediction, and disease detection using multiple Convolutional Neural Network (CNN) models. The proposed approach uses open-source datasets consisting of five crop types (apple, corn, grape, potato, tomato), varying health conditions, and common diseases. By deploying specialized CNN architecture focused on each task, the system achieves a high accuracy of 99.25% in classifying crop types, identifying health status, and detecting specific diseases. Compared to a single CNN model, the use of the proposed …

Empowering Crisis Information Extraction Through Actionability Event Schemata And Domain-Adaptive Pre-Training, Yuhao Zhang, Siaw Ling Lo, Phyo Yi Win Myint

Research Collection School Of Computing and Information Systems

One of the persistent challenges in crisis detection is inferring actionable information to support emergency response. Existing methods focus on situational awareness but often lack actionable insights. This study proposes a holistic approach to implementing an actionability extraction system on social media, including requirement gathering, selection of machine learning tasks, data preparation, and integration with existing resources, providing guidance for governments, civil services, emergency workers, and researchers on supplementing existing channels with actionable information from social media. Our solution leverages an actionability schema and domain-adaptive pre-training, improving upon the state-of-the-art model by 5.5% and 10.1% in micro and macro F1 …

The Presence Of Outer Giant Planets And Their Role In Inner Planet Formation With And Without Their Influence, Mateo E. Guerra Toro

Graduate Theses/Dissertations

We performed dynamical simulations of the giant impact phase of planet formation to investigate the formation of inner terrestrial planets under the influence of 4 solar system-like outer giant planets. We developed a new code using the N-body simulation suite REBOUND and REBOUNDx (Rein et al. (2019) and Tamayo et al. (2019)) to simulate 2 stages of planetary formation: a residual gaseous protoplanetary disk phase and subsequent dynamical evolution after the disk photoevaporates. The initial conditions for the inner planetary embryos were taken by Morrison et al. (2020) based on a range of solid surface densities that produced Super-Earth terrestrial …

Applying Machine Learning And Optimization Algorithms To Perform Feature Selection, Shizhao Yu

Theses and Dissertations (Comprehensive)

The objective of feature selection in the realms of machine learning and data mining is integral, serving as an efficient mechanism to eradicate redundant or irrelevant features, and subsequently augmenting the performance of predictive models. In the contemporary landscape of big data, with the escalating dimensionality of datasets, the efficacy of traditional feature selection methodologies is compromised, due to their computational complexity and ineptitude in addressing the curse of dimensionality. This thesis posits a pioneering feature selection framework that amalgamates machine learning with advanced optimization algorithms. The methodology employs a Support Vector Machine (SVM), in conjunction with a cutting-edge metaheuristic …

Novel Generative And Language Model Architectures With Applications, Edison Mucllari

Theses and Dissertations--Mathematics

This dissertation investigates novel architectures to address fundamental challenges in machine learning, particularly focusing on transformer models, recurrent neural networks, GAN and continual learning and their applications in natural language processing and computer vision. We propose the Neumann-Cayley Gated Recurrent Unit (NC-GRU), which leverages a Neumann series-based Scaled Cayley transformation to maintain orthogonal weight matrices, effectively mitigating exploding gradients problems while improving long-term memory retention across prediction tasks. We demonstrate the practical applications of NC-GRU by implementing our proposed architecture into an autoencoder to derive neural molecular fingerprints. Building upon these advancements, we turn our attention to the transformer architecture, …

Exploring Brent-Kung Adders In Balanced Ternary Cmos Logic, Astrea J.C. Rojas

Theses and Dissertations

The modern computer operates on a 64-bit architecture. These devices can store large numbers and precise decimals, but more advanced devices are needed to support progressing technologies every day. A more efficient system with higher speeds and larger operable numbers would be a key to optimization of computation as we know it. The ternary device, operating in base-3, has the potential to be that optimization. However, binary technology has such precedent and research that it is a difficult gap to span to compare the ternary system to the modern binary system. With a more advanced adder and optimized gates using …

Development Of Software For Genetic Distances, Genotyping, And Phylogenetics Using Rna-Seq Data, Andrew C. Tapia

Theses and Dissertations--Computer Science

This dissertation concerns a new application of RNA-seq data—computation of pairwise genetic distance matrices. RNA-seq captures sequences of RNA molecules in some cells or tissues of interest. RNA-seq provides data are well-suited to studies examining gene expression, and its use for this purpose is currently widespread. A pairwise genetic distance matrix, the main topic of this dissertation, quantifies differences in the genomes of every pair of samples (e.g., individuals) in a given set. Genetic distance matrices are versatile; they can be used for various kinds of downstream analyses, including genotyping, phylogenetics, and genetic diversity measurement. Although DNA sequence data are …

Scalable Parallel-In-Time Integration For Equations Of Motion, Nathan W. Chapman

All Master's Theses

Physical simulations always need to balance accuracy and run-time. This work implements the Parareal Algorithm using graphics processing units across a distributed system to accurately simulate time-dependent physics while attempting to minimize runtime. Data-transfer latency is identified as the primary bottleneck, for which mitigation methods are provided. Benchmarks comparing single-GPU and distributed implementations on a spectrum of coarse and fine discretizations are analyzed.

Leaf-Based Varietal Categorization Of Sweetpotato (Ipomoea Batatas L. Lam.), A Potentially Healthful Vegetable, Using Image Processing And K-Means Clustering, Shahidul Islam, Md Towfiqur Rahman, Md Hamidul Rahman, Abdul Momin

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

Sweetpotato (Ipomoea batatas Lam) leaves contain higher concentrations of phenolic compounds, flavonoids, and carotenoids that are remarkable in health promotion. However, the nutrient content in sweetpotato leaves varies from variety to variety, and leaf shape and color are the key identifying factors for the varietal classification of sweetpotatoes. So, detecting sweetpotato leaves is essential for the in-situ identification of sweetpotato varieties and for developing intelligent agricultural systems. This study aimed to create a leaf-shape-based varietal classification technique for sweetpotato using image processing techniques coupled with a K-means clustering algorithm. 38 leaf images (RGB) of two sweetpotato cultivars were collected …

In-Season Nitrogen Mmanagement: Leveraging Data Visualization For Precision Agriculture, Chathurika Harshani Narayana

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

Effective nitrogen management is vital for sustainable agriculture, impacting both crop yield and environmental health. Traditional methods often use fixed application rates set before planting, which do not adapt to changing crop needs during the season. This can lead to over- or under-application, reducing efficiency and sustainability. While modern tools like sensors, satellites, and UAVs provide valuable real-time data on crop and field conditions, integrating and using this data to guide timely nitrogen decisions remains a major challenge. In-season nitrogen management offers a solution by allowing for dynamic adjustments to nitrogen applications, addressing crop needs as they arise. This approach …

Development And Application Of Computational Tools For Data-Driven Materials Science., Logan L. Lang

Graduate Theses, Dissertations, and Problem Reports (ETD)

Modern materials science generates vast amounts of data from computational simulations and experiments, creating significant challenges for data processing and analysis. This thesis addresses these challenges through the development and application of computational tools within the framework of Material Data Science (MDS). Contributions span the four pillars of MDS: Material/Molecular Data, Algorithms, Databases, and High-Throughput Processes—with a primary focus on the Algorithm, Data, Database pillars.

For the Algorithm pillar, two Python libraries were developed to streamline common analysis tasks. PyProcar simplifies the post-processing and visualization of electronic structure data (band structures, density of states, Fermi surfaces) obtained from various Density …

Your Cursor Reveals: On Analyzing Workers’ Browsing Behavior And Annotation Quality In Crowdsourcing Tasks, Pei-Chi Lo, Ee-Peng Lim

Research Collection School Of Computing and Information Systems

In this work, we investigate the connection between browsing behavior and task quality of crowdsourcing workers performing annotation tasks that require information judgements. Such information judgements are often required to derive ground truth answers to information retrieval queries. We explore the use of workers’ browsing behavior to directly determine their annotation result quality. We hypothesize user attention to be the main factor contributing to a worker’s annotation quality. To predict annotation quality at the task level, we model two aspects of task-specific user attention, also known as general and semantic user attentions . Both aspects of user attention can be …

Personalized Physics Learning Through Ai: Insights From Problem Generation, Chatbot Dialogues, And Intelligent Tutoring Systems, Atharva Dange

Physics Dissertations - Archive

Artificial intelligence (AI) is poised to transform science education, yet questions remain on how best to integrate these technologies into teaching and learning. This dissertation investigates the use of AI-driven tools in university physics courses through three complementary studies. In the first study, a generative language model (ChatGPT) was used to create novel physics homework problems aligned with course objectives. Analysis showed that, after expert vetting, AI-generated questions can foster higher-order problem-solving and reduce student reliance on solution memorization, though careful instructor oversight is required to ensure accuracy. The second study embedded an AI chatbot as a learning aid in …

Simulation Of Annpet For Neural Network Training And System Performance Benchmarking, Pete Martone

Graduate Theses, Dissertations, and Problem Reports (ETD)

Monte Carlo (MC) simulations are often used to provide insight into complex physical phenomenon. They can generate realistic results without the necessity to construct costly and complex apparatus. The ultimate value of these simulations depend on how accurately the physics can be modeled and if a sufficient volume can be produced to account for statistical variance. In medical imaging device development, MC simulations of Positron Emission Tomography (PET) scanners have typically been used to model the performance of new systems. The imaging group in the Department of Radiology have developed a unique detector design for a pre- clinical PET scanner …

Modeling Relativistic Fluids In Dynamical Spacetimes, Terrence Alphonse Pierre Jacques

Graduate Theses, Dissertations, and Problem Reports (ETD)

Multi-messenger astrophysics opens a new era in our understanding of the most dynamic and energetic systems in the Universe. Correlating gravitational-wave and electromagnetic signals in space and time enables stringent tests of models for core-collapse supernovae, merging supermassive black-hole binaries with accretion disks and jets, and mergers of compact object binaries such as binary neutron stars (BNS) and white dwarfs. Comparisons between models and multi-messenger observations may be used to constrain the neutron-star equation of state (EOS), formation channels for compact-object binaries, and emission mechanisms behind short gamma-ray bursts.

In modeling such astrophysical systems, great success has been achieved by …

Can Llms Beat Humans On Discerning Human-Written And Llm-Generated Science News, Dominik Soós, Meng Jiang, Jian Wu

Computer Science Faculty Publications

Science news is increasingly important in connecting scientists and the public by sharing discoveries and innovations. With the rise of large language models (LLMs), there is potential to automate science news creation, but concerns exist about the quality of LLM-generated news versus human-written news. This paper explores whether LLMs can outperform humans in distinguishing between human-written and LLM-generated news. Inspired by the Chain-of-Thought prompting method, we designed a simple yet effective variant called Guided Few-shot (GFS), which encodes the characteristics of news of two types with examples. Our experiments indicated that GFS with just a single example effectively boosted the …

Geometric Gnns For Charged Particle Tracking At Gluex, Ahmed Hossam Mohammed, Kishansingh Rajput, Simon Taylor, Denis Furletov, Sergey Furletov, Malachi Schram

Computer Science Faculty Publications

Nuclear physics experiments are aimed at uncovering the fundamental building blocks of matter. The experiments involve high-energy collisions that produce complex events with many particle trajectories. Tracking charged particles resulting from collisions in the presence of a strong magnetic field is critical to enable the reconstruction of particle trajectories and precise determination of interactions. It is traditionally achieved through combinatorial approaches that scale worse than linearly as the number of hits grows. Since particle hit data naturally form a point cloud and can be structured as graphs, graph neural networks (GNNs) emerge as an intuitive and effective choice for this …

From Philosophy To Nlu: Evolving Definitions Of Research Hypotheses, Jian Wu, Sarah Rajtmajer

Computer Science Faculty Publications

Over the past decades, alongside advancements in natural language processing, significant attention has been paid to training models to automatically extract, understand, test, and generate hypotheses in open and scientific domains. However, interpretations of the term hypothesis for various natural language understanding (NLU) tasks have migrated from traditional definitions in the natural, social, and formal sciences. Even within NLU, we observe differences defining hypotheses across literature. In this paper, we overview and delineate various definitions of hypothesis. Especially, we discern the nuances of definitions across recently published NLU tasks. We highlight the importance of well-structured and well-defined hypotheses, particularly as …

An Analytical Review Of Preprocessing Techniques In Bengali Natural Language Processing, Sovon Chakraborty, Protiva Das, Shakib Mahmud Dipto, Md Aktaruzzaman Pramanik, Jannatun Noor

Computer Science Faculty Publications

Research in Bengali Natural Language Processing (BNLP) is rapidly expanding. Despite being one of the most widely spoken languages in the world, BNLP research remains insufficient, particularly in Bengali speech recognition. The languages rich morphology, agglutinative structure, and diverse dialects make text and speech processing especially challenging. However, these challenges can be addressed with effective preprocessing techniques. Various organizations in Bangladesh and West Bengal are integrating Natural Language Processing (NLP) into their services, but without a thorough understanding of preprocessing, these implementations remain incomplete. Applying proper preprocessing techniques to the Bengali language will serve as a foundation for developing robust …

State Preparation Of Lattice Field Theories Using Quantum Optimal Control, Jack Y. Araz, Siddhanth Bhowmick, Matt Grau, Thomas J. Mcentire, Felix Ringer

Physics Faculty Publications

We explore the application of quantum optimal control (QOC) techniques to state preparation of lattice field theories on quantum computers. As a first example, we focus on the Schwinger model, quantum electrodynamics in 1 + 1 dimensions. We demonstrate that QOC can significantly speed up the ground state preparation compared to gate-based methods, even for models with long-range interactions. Using classical simulations, we explore the dependence on the interqubit coupling strength and the device connectivity, and we study the optimization in the presence of noise. While our simulations indicate potential speedups, the results strongly depend on the device specifications. In …