Numerical Analysis and Scientific Computing Commons^™

Critical Parameters In A Computational Model Of Tgf-Beta-Induced Epithelial Mesenchymal Transition., Mario J. Mendez, Seth H. Weinberg

Biology and Medicine Through Mathematics Conference

No abstract provided.

Recta: Regulon Identification Based On Comparative Genomics And Transcriptomics Analysis, Xin Chen, Anjun Ma, Adam Mcdermaid, Hanyuan Zhang, Chao Liu, Huansheng Cao, Qin Ma

School of Computing: Faculty Publications

Regulons, which serve as co-regulated gene groups contributing to the transcriptional regulation of microbial genomes, have the potential to aid in understanding of underlying regulatory mechanisms. In this study, we designed a novel computational pipeline, regulon identification based on comparative genomics and transcriptomics analysis (RECTA), for regulon prediction related to the gene regulatory network under certain conditions. To demonstrate the effectiveness of this tool, we implemented RECTA on Lactococcus lactis MG1363 data to elucidate acid-response regulons. A total of 51 regulons were identified, 14 of which have computational-verified significance. Among these 14 regulons, five of them were computationally predicted to …

An Algorithm For Calculating Top-Dimensional Bounding Chains, J. Frederico Carvalho​, Mikael Vejdemo-Johansson, Danica Kragic, Florian T. Pokorny

Publications and Research

We describe the Coefficient-Flow algorithm for calculating the bounding chain of an (n-1)-boundary on an n-manifold-like simplicial complex S. We prove its correctness and show that it has a computational time complexity of O(|S(n−1)|) (where S(n−1) is the set of (n-1)-faces of S). We estimate the big-O coefficient which depends on the dimension of S and the implementation. We present an implementation, experimentally evaluate the complexity of our algorithm, and compare its performance with that of solving the underlying linear system.

Stress Levels Of Cs1 Students During Programming- Measurement And A Cause And Effect Analysis, Gopi Satya Sainadh Raju Sarikonda

Theses and Dissertations

Stress is a kind of feeling we experience when we are under pressure. Stress is the word that we use when we feel that we are overloaded mentally in our thoughts and wonder whether we can cope with those placed upon us. The effects of stress are different for different people when we take their age, profession, gender and other aspects into consideration. Many studies show that stress in a learning environment impacts learning negatively.

In this thesis, the role of stress on students in an introductory programming course (CS1) at CSU has been explored. Introductory programming course has a …

Physical Applications Of The Geometric Minimum Action Method, George L. Poppe Jr.

Dissertations, Theses, and Capstone Projects

This thesis extends the landscape of rare events problems solved on stochastic systems by means of the \textit{geometric minimum action method} (gMAM). These include partial differential equations (PDEs) such as the real Ginzburg-Landau equation (RGLE), the linear Schroedinger equation, along with various forms of the nonlinear Schroedinger equation (NLSE) including an application towards an ultra-short pulse mode-locked laser system (MLL).

Additionally we develop analytical tools that can be used alongside numerics to validate those solutions. This includes the use of instanton methods in deriving state transitions for the linear Schroedinger equation and the cubic diffusive NLSE.

These analytical solutions are …

Factors Influencing The Adoption Of Smart Wearable Devices, Apurva Adapa, Fiona Fui-Hoon Nah, Richard H. Hall, Keng Siau

Research Collection School Of Computing and Information Systems

This article examined factors associated with the adoption of smart wearable devices. More specifically, this research explored the contributing and inhibiting factors that influence the adoption of wearable devices through in-depth interviews. The laddering approach was used in the interviews to identify not only the factors but also their relationships to underlying values. The wearable devices examined were a Smart Glass (Google Glass) and a Smart Watch (Sony Smart Watch 3). Two user groups, college students and working professionals, participated in the study. After the participants had the opportunity to try out each of the two devices, the factors that …

Discovering Hidden Topical Hubs And Authorities In Online Social Networks, Roy Ka-Wei Lee, Tuan-Anh Hoang, Ee-Peng Lim

Research Collection School Of Computing and Information Systems

Finding influential users in online social networks is an important problem with many possible useful applications. HITS and other link analysis methods, in particular, have been often used to identify hub and authority users in web graphs and online social networks. These works, however, have not considered topical aspect of links in their analysis. A straightforward approach to overcome this limitation is to first apply topic models to learn the user topics before applying the HITS algorithm. In this paper, we instead propose a novel topic model known as Hub and Authority Topic (HAT) model to combines the two process …

Finding All Nearest Neighbors With A Single Graph Traversal, Yixin Xu, Qi Jianzhong, Borovica‐Gajic Renata, Kulik Lars

Research Collection School Of Computing and Information Systems

Finding the nearest neighbor is a key operation in data analysis and mining. An important variant of nearest neighbor query is the all nearest neighbor (ANN) query, which reports all nearest neighbors for a given set of query objects. Existing studies on ANN queries have focused on Euclidean space. Given the widespread occurrence of spatial networks in urban environments, we study the ANN query in spatial network settings. An example of an ANN query on spatial networks is finding the nearest car parks for all cars currently on the road. We propose VIVET, an index-based algorithm to efficiently process ANN …

Walknet: A Deep Learning Approach To Improving Sidewalk Quality And Accessibility, Andrew Abbott, Alex Deshowitz, Dennis Murray, Eric C. Larson

SMU Data Science Review

This paper proposes a framework for optimizing allocation of infrastructure spending on sidewalk improvement and allowing planners to focus their budgets on the areas in the most need. In this research, we identify curb ramps from Google Street View images using traditional machine learning and deep learning methods. Our convolutional neural network approach achieved an 83% accuracy and high level of precision when classifying curb cuts. We found that as the model received more data, the accuracy increased, which with the continued collection of crowdsourced labeling of curb cuts will increase the model’s classification power. We further investigated a model …

Multi-Point Vibration Measurement And Mode Magnification Of Civil Structures Using Video-Based Motion Processing, Zhexiong Shang, Zhigang Shen

Department of Construction Engineering and Management: Faculty Publications

Image-based vibration measurement has gained increased attentions in civil and construction communities. A recent video-based motion magnification method was developed to measure and visualize small structure motions. This new approach presents a potential for low-cost vibration measurement and mode shape identification. Pilot studies using this approach on simple rigid body structures were reported. Its validity on complex outdoor structures has not been investigated. In this study, a non-contact video-based approach for multi-point vibration measurement and mode magnification is introduced. The proposed approach can output a full-field vibration map that increases the efficiency of the current structural health monitoring (SHM) practice. …

Similarity Based Classification Of Adhd Using Singular Value Decomposition, Taban Eslami, Fahad Saeed

Parallel Computing and Data Science Lab Technical Reports

Attention deficit hyperactivity disorder (ADHD) is one of the most common brain disorders among children. This disorder is considered as a big threat for public health and causes attention, focus and organizing difficulties for children and even adults. Since the cause of ADHD is not known yet, data mining algorithms are being used to help discover patterns which discriminate healthy from ADHD subjects. Numerous efforts are underway with the goal of developing classification tools for ADHD diagnosis based on functional and structural magnetic resonance imaging data of the brain. In this paper, we used Eros, which is a technique for …

Feature Detection In Medical Images Using Deep Learning, Anthony Pasquarelli

Honors Projects in Information Systems and Analytics

This project explores the use of deep learning to predict age based on pediatric hand X-Rays. Data from the Radiological Society of North America’s pediatric bone age challenge were used to train and evaluate a convolutional neural network. The project used InceptionV3, a CNN developed by Google, that was pre-trained on ImageNet, a popular online image dataset. Our fine-tuned version of InceptionV3 yielded an average error of less than 10 months between predicted and actual age. This project shows the effectiveness of deep learning in analyzing medical images and the potential for even greater improvements in the future. In addition …

Big Fish, Big Data: Discussing The State Of Salmon And Improving King Salmon Regulation Through A Population Model, Creed Coram 18

Honor Scholar Theses

No abstract provided.

Understanding Natural Keyboard Typing Using Convolutional Neural Networks On Mobile Sensor Data, Travis Siems

Computer Science and Engineering Theses and Dissertations

Mobile phones and other devices with embedded sensors are becoming increasingly ubiquitous. Audio and motion sensor data may be able to detect information that we did not think possible. Some researchers have created models that can predict computer keyboard typing from a nearby mobile device; however, certain limitations to their experiment setup and methods compelled us to be skeptical of the models’ realistic prediction capability. We investigate the possibility of understanding natural keyboard typing from mobile phones by performing a well-designed data collection experiment that encourages natural typing and interactions. This data collection helps capture realistic vulnerabilities of the security …

Social Network Monitoring For Bursty Cascade Detection, Wei Xie, Feida Zhu, Jing Xiao, Jianzong Wang

Research Collection School Of Computing and Information Systems

Social network services have become important and efficient platforms for users to share all kinds of information. The capability to monitor user-generated information and detect bursts from information diffusions in these social networks brings value to a wide range of real-life applications, such as viral marketing. However, in reality, as a third party, there is always a cost for gathering information from each user or so-called social network sensor. The question then arises how to select a budgeted set of social network sensors to form the data stream for burst detection without compromising the detection performance. In this article, we …

The Role Of Urban Mobility In Retail Business Survival, Krittika D'Silva, Kasthuri Jayarajah, Anastasios Noulas, Cecilia Mascolo, Archan Misra

Research Collection School Of Computing and Information Systems

Economic and urban planning agencies have strong interest in tackling the hard problem of predicting the odds of survival of individual retail businesses. In this work, we tap urban mobility data available both from a location-based intelligence platform, Foursquare, and from public transportation agencies, and investigate whether mobility-derived features can help foretell the failure of such retail businesses, over a 6 month horizon, across 10 distinct cities spanning the globe. We hypothesise that the survival of such a retail outlet is correlated with not only venue-specific characteristics but also broader neighbourhood-level effects. Through careful statistical analysis of Foursquare and taxi …

Predicting Episodes Of Non-Conformant Mobility In Indoor Environments, Kasthuri Jayarajah, Archan Misra

Research Collection School Of Computing and Information Systems

Traditional mobility prediction literature focuses primarily on improved methods to extract latent patterns from individual-specific movement data. When such predictions are incorrect, we ascribe it to 'random' or 'unpredictable' changes in a user's movement behavior. Our hypothesis, however, is that such apparently-random deviations from daily movement patterns can, in fact, of ten be anticipated. In particular, we develop a methodology for predicting Likelihood of Future Non-Conformance (LFNC), based on two central hypotheses: (a) the likelihood of future deviations in movement behavior is positively correlated to the intensity of such trajectory deviations observed in the user's recent past, and (b) the …

Feature Engineering For Machine Learning And Data Analytics, Xin Xia, David Lo

Research Collection School Of Computing and Information Systems

This chapter provides an introduction on feature generation and engineering for software analytics. Specifically, we show how domain-specifc features can be designed and used to automate three software engineering tasks: (1) detecting defective software modules (defect prediction), (2) identifying crashing mobile app release (crash release prediction), and (3) predicting who will leave a software team (developer turnover prediction). For each of the three tasks, different sets of features are extracted from a diverse set of software artifacts, and used to build predictive models.

What Is Gab: A Bastion Of Free Speech Or An Alt-Right Echo Chamber, Savvas Zannettou, Barry Bradlyn, Emiliano De Cristofaro, Haewoon Kwak, Michael Sirivianos, Gianluca Stringhini, Jeremy Blackburn

Research Collection School Of Computing and Information Systems

Over the past few years, a number of new "fringe" communities, like 4chan or certain subreddits, have gained traction on the Web at a rapid pace. However, more often than not, little is known about how they evolve or what kind of activities they attract, despite recent research has shown that they influence how false information reaches mainstream communities. This motivates the need to monitor these communities and analyze their impact on the Web's information ecosystem. In August 2016, a new social network called Gab was created as an alternative to Twitter. It positions itself as putting "people and free …

A Sliding-Window Framework For Representative Subset Selection, Yanhao Wang, Yuchen Li, Kian-Lee Tan

Research Collection School Of Computing and Information Systems

Representative subset selection (RSS) is an important tool for users to draw insights from massive datasets. A common approach is to model RSS as the submodular maximization problem because the utility of extracted representatives often satisfies the "diminishing returns" property. To capture the data recency issue and support different types of constraints in real-world problems, we formulate RSS as maximizing a submodular function subject to a d-knapsack constraint (SMDK) over sliding windows. Then, we propose a novel KnapWindow framework for SMDK. Theoretically, KnapWindow is 1-ε/1+d - approximate for SMDK and achieves sublinear complexity. Finally, we evaluate the efficiency and effectiveness …