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A Survey On Generative Ai For Detector Effects Unfolding In Particle And Nuclear Physics, Tareq Alghamdi, Tommaso Vittorini, Jitao Xu, Marco Battaglieri, Derek I. Glazier, Glòria Montaña, Giorgio Foti, Alessandro Pilloni, Nobuo Sato, Yaohang Li 2026 Old Dominion University

A Survey On Generative Ai For Detector Effects Unfolding In Particle And Nuclear Physics, Tareq Alghamdi, Tommaso Vittorini, Jitao Xu, Marco Battaglieri, Derek I. Glazier, Glòria Montaña, Giorgio Foti, Alessandro Pilloni, Nobuo Sato, Yaohang Li

Computer Science Faculty Publications

In particle and nuclear physics, “detector effects unfolding” can be viewed as a highdimensional inverse problem whose goal is to recover the true event distributions from observed experimental data corrupted by detector-induced distortions. Recent advances in generative AI have positioned data-driven and machine learning-based approaches as powerful alternatives to traditional unfolding techniques, offering superior scalability to high-dimensional data, capability of learning complex detector responses, and the ability to operate directly at the event level. We survey state-of the-art generative AI-based models for detector folding and unfolding. We review existing architectures and training strategies, and highlight recent methodological advances and open …


Replicatorbench: Benchmarking Llm Agents For Replicability In Social And Behavioral Sciences, Bang Nguyen, Dominik Soós, Qian Ma, Rochana R. Obadage, Zack Ranjan, Sai Koneru, Timothy M. Errington, Shakhlo Nematova, Sarah Rajtmajer, Jian Wu, Meng Jiang 2026 University of Notre Dame

Replicatorbench: Benchmarking Llm Agents For Replicability In Social And Behavioral Sciences, Bang Nguyen, Dominik Soós, Qian Ma, Rochana R. Obadage, Zack Ranjan, Sai Koneru, Timothy M. Errington, Shakhlo Nematova, Sarah Rajtmajer, Jian Wu, Meng Jiang

Computer Science Faculty Publications

The literature has witnessed an emerging interest in developing and evaluating AI agents for automated assessment of research claims in scientific papers. Existing benchmarks focus primarily on the computational aspect of this task, testing agents' ability to reproduce or replicate research outcomes when having access to the code and data. This setting, while foundational, (1) fails to capture the inconsistent availability of new data for replication as opposed to reproduction, and (2) lacks ground-truth diversity by focusing exclusively on fully reproducible or replicable papers, thereby failing to evaluate an agent's ability to identify non-replicable research. Furthermore, most benchmarks only evaluate …


Untrained Position-Encoded Multilayer Perceptron Network For Structured Illumination Microscopy Reconstruction, Sahil Sharma, Leonidas Zimianitis, Krishnendu Samanta, Balpreet Singh Ahluwalia, Joby Joseph, Dushan N. Wadduwage 2026 Indian Institute of Technology Delhi

Untrained Position-Encoded Multilayer Perceptron Network For Structured Illumination Microscopy Reconstruction, Sahil Sharma, Leonidas Zimianitis, Krishnendu Samanta, Balpreet Singh Ahluwalia, Joby Joseph, Dushan N. Wadduwage

Computer Science Faculty Publications

Structured Illumination Microscopy (SIM) enables super-resolution imaging by encoding high-frequency spatial information through patterned light. While traditional Fourier-based reconstruction methods are prone to artifacts under suboptimal conditions, recent deep learning approaches often require large training datasets and lack adaptability across different imaging setups. In this work, we present Position Encoded Multi-Layer Perceptron (PEM) network that leverages implicit neural representations (INRs) and SIM forward-model-driven modeling to reconstruct super-resolved images without any training data. PEM-SIM represents each spatial coordinate as a combination of sinusoidal functions across multiple frequencies, enabling rich encoding of fine spatial detail. A forward model grounded in SIM image …


Adaptive Self-Attention For Enhanced Segmentation Of Adult Gliomas In Multi-Modal Mri, Evan P. Savaria, Jiangwen Sun 2026 Old Dominion University

Adaptive Self-Attention For Enhanced Segmentation Of Adult Gliomas In Multi-Modal Mri, Evan P. Savaria, Jiangwen Sun

Computer Science Faculty Publications

Every year there are an estimated 80,000–90,000 new glioma cases, highlighting the need for reliable imaging-based decision support. Although deep learning has improved tumor sub-region segmentation, many state-of-the-art models fail to fully capture complementary information across T1, T1Gd, T2, and FLAIR MRI modalities and often operate as “black boxes,” limiting physician trust when precise delineation is critical for surgical planning, radiation targeting, and treatment monitoring. To address these limitations, we propose AIMS, an Adaptive Integrated Multi-Modal Segmentation framework that maintains modality-specific feature streams and employs adaptive self-attention within a hierarchical CNN-Transformer architecture to prioritize and fuse multi-modal MRI features. We …


Application Paths Of Semantic Modeling In Financial Fraud Detection And Risk Identification, Victor P. Gauthier, Daniel S. Wu 2026 Stevens Institute of Technology

Application Paths Of Semantic Modeling In Financial Fraud Detection And Risk Identification, Victor P. Gauthier, Daniel S. Wu

Computer Science Faculty Publications

Financial fraud and risk pose significant threats to economic stability and individual well-being. Traditional detection methods often struggle to keep pace with increasingly sophisticated fraudulent schemes. Semantic modeling, which focuses on understanding the meaning and relationships within data, offers a promising avenue for enhancing fraud detection and risk identification. This review paper explores the application paths of semantic modeling in this domain. We begin with a historical overview of fraud detection techniques, highlighting the limitations of traditional approaches. Subsequently, we delve into core themes, including knowledge graph-based fraud detection and semantic rule-based inference for risk assessment. We then compare and …


Design And Analysis Of Modern Quantum Neural Network Architectures For Intelligent Systems, Lakshmi Chandrakanth Kasireddy, Prabhakara Rao Kapula, Dineshkumar Rajendran, Neha Bharani, Srikanth Pulipeti, Islombek Khushvaktov 2026 ThoughtSpot Inc, USA

Design And Analysis Of Modern Quantum Neural Network Architectures For Intelligent Systems, Lakshmi Chandrakanth Kasireddy, Prabhakara Rao Kapula, Dineshkumar Rajendran, Neha Bharani, Srikanth Pulipeti, Islombek Khushvaktov

Computer Science Faculty Publications

Quantum neural networks (QNNs) offer a principled pathway for integrating quantum computation with machine learning through superposition- and entanglement-based representations. This chapter proposes an architecture-aware design and evaluation framework for modern QNNs, emphasizing robustness and system feasibility alongside predictive performance. Multiple architectures variational QNNs, quantum convolutional neural networks, tensor-network hybrids, and fully quantum models—are assessed under a unified protocol. Experimental analysis shows that the proposed architecture-search–guided QNN achieves 91.8% classification accuracy and an F1-score of 0.914, outperforming fixed-template variational QNNs by approximately 5.6 percentage points. Under depolarizing noise with probability p = 0.10, the proposed model retains 85.3% accuracy, whereas …


Integration Of Hybrid Quantum-Neuromorphic Ai With Cloud, Edge, And High-Performance Computing Environments, Arun B. Prasad, Ajay Prasad, Dineshkumar Rajendran, Anurag Tiwari, T. Akilan, Islombek Khushvaktov 2026 Nirma University

Integration Of Hybrid Quantum-Neuromorphic Ai With Cloud, Edge, And High-Performance Computing Environments, Arun B. Prasad, Ajay Prasad, Dineshkumar Rajendran, Anurag Tiwari, T. Akilan, Islombek Khushvaktov

Computer Science Faculty Publications

The convergence of quantum computing, neuromorphic learning, and distributed cloud infrastructures has occurred very rapidly, and intelligent systems are now providing new opportunities, but the challenge of instability, complexity of orchestration, and noise sensitivity remains in the way of practical integration. The proposed work is based on a hybrid quantum and neuromorphic architecture, which is the integration of event-based neuromorphic adaptation and quantum-assisted global optimization, orchestrated by cloud-HPC. The architecture presents the thermodynamically regularized learning and resourceful task scheduling to the probabilistic search and the continuous local adaptation. Experimental evaluation across financial modeling, medical imaging, and physical system prediction shows …


Modeling Joint Visual Attention In Naturalistic Dyadic Interactions, Kuushini Thennakoon, Yasasi Abeysinghe, Bhanuka Mahanama, Vikas Ashok, Sampath Jayarathna 2026 Old Dominion University

Modeling Joint Visual Attention In Naturalistic Dyadic Interactions, Kuushini Thennakoon, Yasasi Abeysinghe, Bhanuka Mahanama, Vikas Ashok, Sampath Jayarathna

Computer Science Faculty Publications

Joint visual attention (JVA) provides important insight into how individuals coordinate attention during social interaction. Egocentric eye tracking enables the study of JVA in natural, multi-user settings. This work presents a multi-stage framework to identify and analyze JVA using egocentric video and gaze data. The approach consists of three steps: spatiotemporal tube-based visual similarity, gaze-guided object detection, and attention pattern analysis using the ambient–focal coefficient K. Results show that object-focused collaborative activities exhibit high JVA, with object detection capturing higher joint attention than visual similarity, whereas conversation-based or independent activities show lower and more fragmented joint attention. Analysis of K …


Exploring Large Language Models For Trustworthy Use: Insights From Research And Development, Sandeep Kalari, Sahithi Padidela, Vikas Ashok, Ravi Mukkamala 2026 Old Dominion University

Exploring Large Language Models For Trustworthy Use: Insights From Research And Development, Sandeep Kalari, Sahithi Padidela, Vikas Ashok, Ravi Mukkamala

Computer Science Faculty Publications

Large Language Models (LLMs) are increasingly being adopted in a wide variety of domains, including sensitive domains such as healthcare and finance. However, persistent challenges such as unreliable data sources, privacy breaches, and hallucinated output continue to hinder their usage. We have experimented with several strategies to address these challenges. First, we developed BlockQwen, a blockchain-augmented framework that integrates decentralized trust validation, role-specific access control, and verifiable audit trails into the Qwen 2.5 LLM workflow. Second, we developed PrivAware, a multilayered privacy-enforcement framework, using a fine-tuned Flan-T5 model with self-attention masking, to safeguard data while maintaining high utility. Both systems …


A Comparative Analysis Of Explainable Ai (Xai) Techniques For Transparent And Reliable Image Classification, Sovon Chakraborty, Shakib Mahmud Dipto, Kevin R. Pilkiewicz, Michael L. Mayo, Pratip Rana 2026 Old Dominion University

A Comparative Analysis Of Explainable Ai (Xai) Techniques For Transparent And Reliable Image Classification, Sovon Chakraborty, Shakib Mahmud Dipto, Kevin R. Pilkiewicz, Michael L. Mayo, Pratip Rana

Computer Science Faculty Publications

Evaluating the trustworthiness of black-box machine learning models remains a significant methodological challenge. Their lack of transparency and interpretability limits applicability, because stakeholders often seek transparency before trusting the results of black-box machine learning models. Explainable AI (XAI) methods provide for human-understandable justifications and informed decision-making of these black-box architectures. Therefore, it is imperative to select the proper XAI model tailored to specific tasks. In this research, we focus on examining four XAI techniques: PEEK, LRP, GRAD-CAM, and LIME to understand how they perform against each other for image classification tasks. We evaluate the performance, robustness, generalizability, noise stability, and …


Attf-Gnn: An Attention-Based Multi-Omics Graph Neural Network With Modality Learning For Disease Subtyping, Sovon Chakraborty, Eleni Adam, Terry Stilwell, Harold Riethman, Desh Ranjan, Pratip Rana 2026 Old Dominion University

Attf-Gnn: An Attention-Based Multi-Omics Graph Neural Network With Modality Learning For Disease Subtyping, Sovon Chakraborty, Eleni Adam, Terry Stilwell, Harold Riethman, Desh Ranjan, Pratip Rana

Computer Science Faculty Publications

We propose AttF-GNN, an attention-based graph fusion strategy for diseases classification and subtyping. In multiomics analysis, not all types of molecular data are equally relevant for disease subtyping and considering all modalities equally may obscure discriminative signals and limit the effectiveness of predictive models by overlooking modality-specific contributions. Therefore, we design an attention-based multimodal GraphSAGE framework that can automatically emphasize the modalities providing the most relevant information for classification. At first, we have constructed three graphs using mRNA, RNA-seq and DNA methylation modalities, and train each omics with individual GraphSAGE encoders. Next, a unified intersection graph is formed using an …


Deep Incomplete Multi-View Clustering Via Hierarchical Imputation And Alignment, Yiming Du, Ziyu Wang, Jian Li, Rui Ning, Lusi Li 2026 Old Dominion University

Deep Incomplete Multi-View Clustering Via Hierarchical Imputation And Alignment, Yiming Du, Ziyu Wang, Jian Li, Rui Ning, Lusi Li

Computer Science Faculty Publications

Incomplete multi-view clustering (IMVC) aims to discover shared cluster structures from multi-view data with partial observations. The core challenges lie in accurately imputing missing views without introducing bias, while maintaining semantic consistency across views and compactness within clusters. To address these challenges, we propose DIMVC-HIA, a novel deep IMVC framework that integrates hierarchical imputation and alignment with four key components: (1) view-specific autoencoders for latent feature extraction, coupled with a view-shared clustering predictor to produce soft cluster assignments; (2) a hierarchical imputation module that first estimates missing cluster assignments based on cross-view contrastive similarity, and then reconstructs missing features using …


Attention-Based Multi-Omics Fusion For Drug Synergy Prediction, Kusal Debnath, Pratip Rana, Preetam Ghosh 2026 Virginia Commonwealth University

Attention-Based Multi-Omics Fusion For Drug Synergy Prediction, Kusal Debnath, Pratip Rana, Preetam Ghosh

Computer Science Faculty Publications

Drug combination therapy in disease management gained popularity in the last few decades. Computational modeling of such combinations is an active area of research in the drug discovery domain. While earlier approaches solely emphasized on the structural features of participating drugs for designing synergistic models, they lack other crucial factors directly linked with drug administration - omics expressions. As differential omics expression is a downstream consequence of the administered drug combinations, utilizing such expressions while designing synergistic models promises robust and dynamic modeling. In this work, we propose SynergyLM that fuses multi-omics features with drug embeddings to build an omics-aware …


A Survey Of Ai Methods For Geometry Preparation And Mesh Generation In Engineering Simulation, Steven Owen, Nathan Brown, Nikos Chrisochoides, Rao Garimella, Xianfeng Gu, Franck Ledoux, Na Lei, Roshan Quadros, Navamita Ray, Nick Winovich, Yongjie Jessica Zhang 2026 Sandia National Laboratories

A Survey Of Ai Methods For Geometry Preparation And Mesh Generation In Engineering Simulation, Steven Owen, Nathan Brown, Nikos Chrisochoides, Rao Garimella, Xianfeng Gu, Franck Ledoux, Na Lei, Roshan Quadros, Navamita Ray, Nick Winovich, Yongjie Jessica Zhang

Computer Science Faculty Publications

Artificial intelligence is beginning to reduce the manual effort in the CAD-to-mesh pipeline. Written for meshing and geometry practitioners with limited AI background, this survey organizes recent work by workflow step. We cover part classification and segmentation, mesh quality prediction, and defeaturing. We review AI guidance for unstructured meshing, block-structured meshing in 2D and 3D, and volumetric parameterization, including reconstruction from implicit or sampled geometry. We also discuss parallel mesh generation and scripting automation via reinforcement learning and large language models. Across these topics, AI complements established geometry and meshing algorithms rather than replacing them. We conclude with practical lessons …


Ai-Driven Real-Time Detection Of Zero-Day Browser Exploits Using Webassembly-Based Instrumentation, Temitope Damilola Elijah 2026 Georgia Southern University

Ai-Driven Real-Time Detection Of Zero-Day Browser Exploits Using Webassembly-Based Instrumentation, Temitope Damilola Elijah

College of Graduate Studies: Theses & Dissertations

The rapid evolution of web browsers into fully fledged application execution environments has significantly expanded their attack surface, making them prime targets for sophisticated zero-day exploits that evade traditional signature-based security mechanisms. To address this challenge, this research proposes an AI-driven framework for real-time detection and analysis of zero-day exploits in web browsers by integrating browser-level telemetry monitoring, unsupervised anomaly detection, and large language model–based threat interpretation. The framework introduces a lightweight WebAssembly telemetry agent embedded within the browser runtime to capture low-level execution behaviors, including WASM module instantiation, memory growth patterns, network interactions, and runtime API activity. These telemetry …


Swimming In Uncertainty: Filling Data Gaps And Providing An Educational Platform For Beach Water Quality At Tybee Island, Georgia, Lukas Roberson 2026 Georgia Southern University

Swimming In Uncertainty: Filling Data Gaps And Providing An Educational Platform For Beach Water Quality At Tybee Island, Georgia, Lukas Roberson

College of Graduate Studies: Theses & Dissertations

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Swimming in beaches water contaminated with high levels of bacteria can make you sick. Current monitoring at the public beaches on Tybee Island consists of weekly monitoring and enumeration of fecal indicator bacteria that takes 24 hours for results. If the number of bacteria exceed regulatory limits, a public health advisory is issued, and affected waters are retested until …


Markov Chain Wave Generative Adversarial Network For Bee Bioacoustic Signal Synthesis, Kumudu Samarappuli, Iman Ardekani, Mahsa Mohaghegh, Abdolhossein Sarrafzadeh 2026 Unitec Institute of Technology

Markov Chain Wave Generative Adversarial Network For Bee Bioacoustic Signal Synthesis, Kumudu Samarappuli, Iman Ardekani, Mahsa Mohaghegh, Abdolhossein Sarrafzadeh

Electrical & Computer Engineering Faculty Publications

This paper presents a framework for synthesizing bee bioacoustic signals associated with hive events. While existing approaches like WaveGAN have shown promise in audio generation, they often fail to preserve the subtle temporal and spectral features of bioacoustic signals critical for event-specific classification. The proposed method, MCWaveGAN, extends WaveGAN with a Markov Chain refinement stage, producing synthetic signals that more closely match the distribution of real bioacoustic data. Experimental results show that this method captures signal characteristics more effectively than WaveGAN alone. Furthermore, when integrated into a classifier, synthesized signals improved hive status prediction accuracy. These results highlight the potential …


Interpretable Battery Soh Prediction: A Comparative Interpretability Framework For Multi-Architecture Ml Models, Shafiyee Islam, Gon Namkoong 2026 Old Dominion University

Interpretable Battery Soh Prediction: A Comparative Interpretability Framework For Multi-Architecture Ml Models, Shafiyee Islam, Gon Namkoong

Electrical & Computer Engineering Faculty Publications

This work introduces a unified interpretability-efficiency framework for lithium-ion battery state of health (SOH) prediction using hybrid deep learning architectures. We comparatively analyze four hybrid models: CNN LSTM MultiHead, CNN Feature Extractor LSTM, DNN LSTM, and DNN BiLSTM to disentangle how network topology, feature composition, and computational design influence both predictive fidelity and physical interpretability. By integrating Monte Carlo Shapley (MC Shapley), background occlusion SHAP (BoSHAP), and ablation analysis, we quantify the contribution and robustness of five electrochemical feature groups: time, capacity, voltage, dQ/dV and peaks of dQ/dV from NASA battery dataset. The results reveal a consistent dominance of differential …


Generative Ai-Driven Optimization In Flexible And Reconfigurable Manufacturing Systems, Salah Hammedi, Hicham Chaoui, Lotfi Nabli 2026 Monastir University, Tunisia

Generative Ai-Driven Optimization In Flexible And Reconfigurable Manufacturing Systems, Salah Hammedi, Hicham Chaoui, Lotfi Nabli

Electrical & Computer Engineering Faculty Publications

Flexible and Reconfigurable Manufacturing Systems (FRMSs) are essential for coping with variability in modern production environments; however, efficient scheduling and rapid reconfiguration remain challenging. This paper presents a hybrid optimization framework that integrates Colored Petri Net (CPN) modeling with Generative Artificial Intelligence (GenAI) to enhance scheduling performance and system adaptability. The CPN formalism ensures verifiable modeling of system dynamics, while a transformer-based generative model produces candidate scheduling and reconfiguration strategies. Simulation experiments were conducted under static, dynamic, and adaptive scenarios, including machine breakdowns and dynamic job arrivals. Performance was evaluated using makespan, mean flow time, machine utilization, and reconfiguration latency. …


Stabilized Multi-Objective Optimization For Camouflage Attack In Remote Sensing, Omid Rajabi Rostami, Kazi Aminul Islam, Liuwan Zhu, Rui Ning, Chungsheng Xin, Hongyi Wu, Jiang Li 2026 Old Dominion University

Stabilized Multi-Objective Optimization For Camouflage Attack In Remote Sensing, Omid Rajabi Rostami, Kazi Aminul Islam, Liuwan Zhu, Rui Ning, Chungsheng Xin, Hongyi Wu, Jiang Li

Electrical & Computer Engineering Faculty Publications

We investigate the vulnerability of multi-task maritime surveillance systems in which object detection and semantic segmentation operate concurrently. We propose Stabilized Multi-Objective Optimization (SMO), a framework that jointly targets Mask R-CNN and U-Net with a single universal adversarial texture in a digital white-box setting, with additional cross-model transfer evaluation. SMO combines a logarithmic-inversion loss transformation, feature inconsistency, and a systematic comparison of six optimization strategies for seven heterogeneous objectives. The loss transformation controls loss-dependent gradient scaling, while a U-Net generator supplies a spatially coherent texture and a hull-aligned application function accommodates target geometry without explicit Expectation over Transformation (EoT) sampling. …


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