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The Application Of Machine Learning In Analyzing Organic Compounds From Nmr Spectral Data, Nicole Maia Powell 2021 The College of Wooster

The Application Of Machine Learning In Analyzing Organic Compounds From Nmr Spectral Data, Nicole Maia Powell

Senior Independent Study Theses

Nuclear magnetic resonance (NMR) is used in organic chemistry to identify unknown organic compounds. The data obtained from an NMR spectrometer are typically shown in the form of a spectrum, which is then analyzed by an analytical chemist. The action of analyzing a spectrum, especially one of a large and complex molecule, is a long and tedious process. In this project, Python is used to implement hierarchical clustering on NMR data obtained from an NMR spectrometer at the College of Wooster to explore its application in NMR analysis. MATLAB is used to build a decision tree from the same data, …


A Deep Machine Learning Approach For Predicting Freeway Work Zone Delay Using Big Data, Abdullah Shabarek 2020 New Jersey Institute of Technology

A Deep Machine Learning Approach For Predicting Freeway Work Zone Delay Using Big Data, Abdullah Shabarek

Dissertations

The introduction of deep learning and big data analytics may significantly elevate the performance of traffic speed prediction. Work zones become one of the most critical factors causing congestion impact, which reduces the mobility as well as traffic safety. A comprehensive literature review on existing work zone delay prediction models (i.e., parametric, simulation and non-parametric models) is conducted in this research. The research shows the limitations of each model. Moreover, most previous modeling approaches did not consider user delay for connected freeways when predicting traffic speed under work zone conditions. This research proposes Deep Artificial Neural Network (Deep ANN) and …


Inexact Tensor Methods And Their Application To Stochastic Convex Optimization, Artem Agafonov, Dmitry Kamzolov, Pavel Dvurechensky, Alexander Gasnikov, Martin Takac 2020 Moscow Institute of Physics and Technology, Dolgoprudny, Russian Federation & Mohamed bin Zayed University of Artificial Intelligence

Inexact Tensor Methods And Their Application To Stochastic Convex Optimization, Artem Agafonov, Dmitry Kamzolov, Pavel Dvurechensky, Alexander Gasnikov, Martin Takac

Machine Learning Faculty Publications

We propose general non-accelerated and accelerated tensor methods under inexact information on the derivatives of the objective, analyze their convergence rate. Further, we provide conditions for the inexactness in each derivative that is sufficient for each algorithm to achieve a desired accuracy. As a corollary, we propose stochastic tensor methods for convex optimization and obtain sufficient mini-batch sizes for each derivative. © 2020, CC BY.


Addressing Ad-Blocking Challenges In Online Publishing: A Data Science Approach, Shuai Zhao 2020 New Jersey Institute of Technology

Addressing Ad-Blocking Challenges In Online Publishing: A Data Science Approach, Shuai Zhao

Dissertations

The revenue of online display advertising is expected to reach 389 billion U.S. dollars globally in 2021. However, the fast increase in ad-blocker usage impacts publishers' ad revenue and the ad-supported free web. Faced with this problem, many online publishers choose either to cooperate with ad-blocker software companies to show acceptable ads or to build a wall that requires users to whitelist (i.e., turn off ad-blockers) for content access. This dissertation aims to deepen the understanding of existing counter-ad-blocking strategies and further explore how to address ad-blocking challenges through a data science approach.

The dissertation starts with investigating and identifying …


Distributed Load Testing By Modeling And Simulating User Behavior, Chester Ira Parrott 2020 Louisiana State University and Agricultural and Mechanical College

Distributed Load Testing By Modeling And Simulating User Behavior, Chester Ira Parrott

LSU Doctoral Dissertations

Modern human-machine systems such as microservices rely upon agile engineering practices which require changes to be tested and released more frequently than classically engineered systems. A critical step in the testing of such systems is the generation of realistic workloads or load testing. Generated workload emulates the expected behaviors of users and machines within a system under test in order to find potentially unknown failure states. Typical testing tools rely on static testing artifacts to generate realistic workload conditions. Such artifacts can be cumbersome and costly to maintain; however, even model-based alternatives can prevent adaptation to changes in a system …


A Neat Approach To Malware Classification, Jason Do 2020 San Jose State University

A Neat Approach To Malware Classification, Jason Do

Master's Projects

Current malware detection software often relies on machine learning, which is seen as an improvement over signature-based techniques. Problems with a machine learning based approach can arise when malware writers modify their code with the intent to evade detection. This leads to a cat and mouse situation where new models must constantly be trained to detect new malware variants. In this research, we experiment with genetic algorithms as a means of evolving machine learning models to detect malware. Genetic algorithms, which simulate natural selection, provide a way for models to adapt to continuous changes in a malware families, and thereby …


Pyxtal_Ff: A Python Library For Automated Force Field Generation, Howard Yanxon, David Zagaceta, Binh Tang, David S. Matteson, Qiang Zhu 2020 University of Nevada, Las Vegas

Pyxtal_Ff: A Python Library For Automated Force Field Generation, Howard Yanxon, David Zagaceta, Binh Tang, David S. Matteson, Qiang Zhu

Physics & Astronomy Faculty Research

We present PyXtal_FF—a package based on Python programming language—for developing machine learning potentials (MLPs). The aim of PyXtal_FF is to promote the application of atomistic simulations through providing several choices of atom-centered descriptors and machine learning regressions in one platform. Based on the given choice of descriptors (including the atom-centered symmetry functions, embedded atom density, SO4 bispectrum, and smooth SO3 power spectrum), PyXtal_FF can train MLPs with either generalized linear regression or neural network models, by simultaneously minimizing the errors of energy/forces/stress tensors in comparison with the data from ab-initio simulations. The trained MLP model from PyXtal_FF is interfaced with …


Signature Identification And Verification Systems: A Comparative Study On The Online And Offline Techniques, nehal hamdy al-banhawy, Heba Mohsen, Neveen I. Ghali Prof. 2020 Al-Azhar University - Egypt

Signature Identification And Verification Systems: A Comparative Study On The Online And Offline Techniques, Nehal Hamdy Al-Banhawy, Heba Mohsen, Neveen I. Ghali Prof.

Future Computing and Informatics Journal

Handwritten signature identification and verification has become an active area of research in recent years. Handwritten signature identification systems are used for identifying the user among all users enrolled in the system while handwritten signature verification systems are used for authenticating a user by comparing a specific signature with his signature that is stored in the system. This paper presents a review for commonly used methods for preprocessing, feature extraction and classification techniques in signature identification and verification systems, in addition to a comparison between the systems implemented in the literature for identification techniques and verification techniques in online and …


Data: The Good, The Bad And The Ethical, John D. Kelleher, Filipe Cabral Pinto, Luis M. Cortesao 2020 Technological University Dublin

Data: The Good, The Bad And The Ethical, John D. Kelleher, Filipe Cabral Pinto, Luis M. Cortesao

Articles

It is often the case with new technologies that it is very hard to predict their long-term impacts and as a result, although new technology may be beneficial in the short term, it can still cause problems in the longer term. This is what happened with oil by-products in different areas: the use of plastic as a disposable material did not take into account the hundreds of years necessary for its decomposition and its related long-term environmental damage. Data is said to be the new oil. The message to be conveyed is associated with its intrinsic value. But as in …


End-To-End Learning Utilizing Temporal Information For Vision- Based Autonomous Driving, Dapeng Guo 2020 San Jose State University

End-To-End Learning Utilizing Temporal Information For Vision- Based Autonomous Driving, Dapeng Guo

Master's Projects

End-to-End learning models trained with conditional imitation learning (CIL) have demonstrated their capabilities in driving autonomously in dynamic environments. The performance of such models however is limited as most of them fail to utilize the temporal information, which resides in a sequence of observations. In this work, we explore the use of temporal information with a recurrent network to improve driving performance. We propose a model that combines a pre-trained, deeper convolutional neural network to better capture image features with a long short-term memory network to better explore temporal information. Experimental results indicate that the proposed model achieves performance gain …


Lidar Object Detection Utilizing Existing Cnns For Smart Cities, Vinay Ponnaganti 2020 San Jose State University

Lidar Object Detection Utilizing Existing Cnns For Smart Cities, Vinay Ponnaganti

Master's Projects

As governments and private companies alike race to achieve the vision of a smart city — where artificial intelligence (AI) technology is used to enable self-driving cars, cashier-less shopping experiences and connected home devices from thermostats to robot vacuum cleaners — advancements are being made in both software and hardware to enable increasingly real-time, accurate inference at the edge. One hardware solution adopted for this purpose is the LiDAR sensor, which utilizes infrared lasers to accurately detect and map its surroundings in 3D. On the software side, developers have turned to artificial neural networks to make predictions and recommendations with …


Detecting Deepfakes With Deep Learning, Eric C. Tjon 2020 San Jose State University

Detecting Deepfakes With Deep Learning, Eric C. Tjon

Master's Projects

Advances in generative models and manipulation techniques have given rise to digitally altered videos known as deepfakes. These videos are difficult to identify for both humans and machines. Typical detection methods exploit various imperfections in deepfake videos, such as inconsistent posing and visual artifacts. In this paper, we propose a pipeline with two distinct pathways for examining individual frames and video clips. The image pathway contains a novel architecture called Eff-YNet capable of both segmenting and detecting frames from deepfake videos. It consists of a U-Net with a classification branch and an EfficientNet B4 encoder. The video pathway implements a …


Multi-Agent Deep Reinforcement Learning For Walkers, Inhee Park 2020 San Jose State University

Multi-Agent Deep Reinforcement Learning For Walkers, Inhee Park

Master's Projects

This project was motivated by seeking an AI method towards Artificial General Intelligence (AGI), that is, more similar to learning behavior of human-beings. As of today, Deep Reinforcement Learning (DRL) is the most closer to the AGI compared to other machine learning methods. To better understand the DRL, we compares and contrasts to other related methods: Deep Learning, Dynamic Programming and Game Theory.

We apply one of state-of-art DRL algorithms, called Proximal Policy Op- timization (PPO) to the robot walkers locomotion, as a simple yet challenging environment, inherently continuous and high-dimensional state/action space.

The end goal of this project is …


Malware Classification With Gaussian Mixture Model-Hidden Markov Models, Jing Zhao 2020 San Jose State University

Malware Classification With Gaussian Mixture Model-Hidden Markov Models, Jing Zhao

Master's Projects

Discrete hidden Markov models (HMM) are often applied to the malware detection and classification problems. However, the continuous analog of discrete HMMs, that is, Gaussian mixture model-HMMs (GMM-HMM), are rarely considered in the field of cybersecurity. In this study, we apply GMM-HMMs to the malware classification problem and we compare our results to those obtained using discrete HMMs. As features, we consider opcode sequences and entropy-based sequences. For our opcode features, GMM-HMMs produce results that are comparable to those obtained using discrete HMMs, whereas for our entropy-based features, GMM-HMMs generally improve on the classification results that we can attain with …


The Use Of Evidential Reasoning Model With Biomarkers In Pancreatic Cancer Prediction, Qianhui Fan 2020 San Jose State University

The Use Of Evidential Reasoning Model With Biomarkers In Pancreatic Cancer Prediction, Qianhui Fan

Master's Projects

In this project, an evidential reasoning model is built to amalgamate factors that could be used in early detection of pancreatic cancer. Our machine learning model outputs a probability of a given patient having prostate cancer based on various input variables. These variables include health history factors, such as smoking and medical history, technical artifacts, such as biopsy sequencing technology, and genomic biomarkers such as mutational, transcriptional and methylomic profiles, cfDNA, and copy number variation. The dataset used in this project is a part of The Cancer Genome Atlas (TCGA) project and was collected from the National Cancer Institute (NIH) …


Machine Learning Model Selection For Predicting Global Bathymetry, Nicholas P. Moran 2020 LSU New Orleans

Machine Learning Model Selection For Predicting Global Bathymetry, Nicholas P. Moran

LSU New Orleans Theses and Dissertations

This work is concerned with the viability of Machine Learning (ML) in training models for predicting global bathymetry, and whether there is a best fit model for predicting that bathymetry. The desired result is an investigation of the ability for ML to be used in future prediction models and to experiment with multiple trained models to determine an optimum selection. Ocean features were aggregated from a set of external studies and placed into two minute spatial grids representing the earth's oceans. A set of regression models, classification models, and a novel classification model were then fit to this data and …


Quantifying Deepfake Detection Accuracy For A Variety Of Natural Settings, Pratikkumar Prajapati 2020 San Jose State University

Quantifying Deepfake Detection Accuracy For A Variety Of Natural Settings, Pratikkumar Prajapati

Master's Projects

Deep fakes are videos generated from a starting video of a person where that person's face has been swapped for someone else's. In this report, we describe our work to develop general, deep learning-based models to classify Deep Fake content. Our first experiments involved simple Convolution Neural Network (CNN)-based models where we varied how individual frames from the source video were passed to the CNN. These simple models tended to give low accuracy scores for discriminating fake versus non-fake videos of less than 60%. We then developed three more sophisticated models: one based on choosing test frames, one based on …


Malware Classification Using Lstms, Dennis Dang 2020 San Jose State University

Malware Classification Using Lstms, Dennis Dang

Master's Projects

Signature and anomaly based detection have long been quintessential techniques used in malware detection. However, these techniques have become increasingly ineffective as malware becomes more complex. Researchers have therefore turned to deep learning to construct better performing models. In this project, we create four different long-short term memory (LSTM) models and train each model to classify malware by family type. Our data consists of opcodes extracted from malware executables. We employ techniques used in natural language processing (NLP) such as word embedding and bidirection LSTMs (biLSTM). We also use convolutional neural networks (CNN). We found that our model consisting of …


Bioinformatics Metadata Extraction For Machine Learning Analysis, Zachary Tom 2020 San Jose State University

Bioinformatics Metadata Extraction For Machine Learning Analysis, Zachary Tom

Master's Projects

Next generation sequencing (NGS) has revolutionized the biological sciences. Today, entire genomes can be rapidly sequenced, enabling advancements in personalized medicine, genetic diseases, and more. The National Center for Biotechnology Information (NCBI) hosts the Sequence Read Archive (SRA) containing vast amounts of valuable NGS data. Recently, research has shown that sequencing errors in conventional NGS workflows are key confounding factors for detecting mutations. Various steps such as sample handling and library preparation can introduce artifacts that affect the accuracy of calling rare mutations. Thus, there is a need for more insight into the exact relationship between various steps of the …


A Survey On Underwater Bionic Electric Perception, Guangming Xie, Junzheng Zheng, Wang Chen 2020 1. State Key Laboratory of Turbulence and Complex Systems,Intelligent Biomimetic Design Lab,College of Engineering,Peking University,Beijing 100871,China; ;3. Institute of Ocean Research,Peking University,Beijing 100871,China; ;4. Peng Cheng Laboratory,Shenzhen 518055,China;

A Survey On Underwater Bionic Electric Perception, Guangming Xie, Junzheng Zheng, Wang Chen

Journal of System Simulation

Abstract: Sensing and detection technologies for underwater robots in complex underwater environments have been urgently needed.Weakly electric fields-based underwater bionic electric perception is a promising technical route.A kind of fish in nature,called weakly electric fish,can perceive their surrounding environment and other creatures through the varied electric field generated by themselves.Inspired by the electric fish,researchers have focused on the principle and methods of underwater perception based on weakly electric fields and the applications for intelligent underwater robots.The biological mechanism of weakly electric fish,the modeling and perception theory of underwater electric field,the underwater electric perception technology,and their applications are reviewed,and the …


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