High-Throughput Snp Discovery And Assay
Development In Common Bean,
2010
USDA, Agricultural Research Service
High-Throughput Snp Discovery And Assay Development In Common Bean, David L. Hyten, Qijian Song, Edward W. Fickus, Charles V. Quigley, Jong-Sung Lim, Ik-Young Choi, Eun-Young Hwang, Marcial Pastor-Corrales, Perry B. Cregan
Department of Agronomy and Horticulture: Faculty Publications
Background: Next generation sequencing has significantly increased the speed at which single nucleotide polymorphisms (SNPs) can be discovered and subsequently used as molecular markers for research. Unfortunately, for species such as common bean (Phaseolus vulgaris L.) which do not have a whole genome sequence available, the use of next generation sequencing for SNP discovery is much more difficult and costly. To this end we developed a method which couples sequences obtained from the Roche 454-FLX system (454) with the Illumina Genome Analyzer (GA) for high-throughput SNP discovery. Results: Using a multi-tier reduced representation library we discovered a total of …
Fine Mapping Of The Soybean Aphid-Resistance Gene Rag2 In Soybean Pi 200538,
2010
University of Illinois
Fine Mapping Of The Soybean Aphid-Resistance Gene Rag2 In Soybean Pi 200538, Ki-Seung Kim, Curtis B. Hill, Glen L. Hartman, D. L. Hyten, Matthew E. Hudson, Brian W. Diers
Department of Agronomy and Horticulture: Faculty Publications
The discovery of biotype diversity of soybean aphid (SA: Aphis glycines Matsumura) in North America emphasizes the necessity to identify new aphid-resistance genes. The soybean [Glycine max (L.) Merr.] plant introduction (PI) 200538 is a promising source of SA resistance because it shows a high level of resistance to a SA biotype that can overcome the SA-resistance gene Rag1 from ‘Dowling’. The SA-resistance gene Rag2 was previously mapped from PI 200538 to a 10-cM marker interval on soybean chromosome 13 [formerly linkage group (LG) F]. The objective of this study was to fine map Rag2. This fine mapping …
2010 Wildflower Of The Year: Wild Ginger, Asarum Canadense,
2010
University of Richmond
2010 Wildflower Of The Year: Wild Ginger, Asarum Canadense, W. John Hayden
Biology Faculty Publications
Wild ginger is a low herbaceous plant. The stem consists of a branched creeping rhizome at or just below the soil surface. Soft-hairy leaves arise in pairs annually from rhizome branches. Petioles can be up to 20 cm long, elevating the 7—25 mm wide kidney-shaped leaf blades above the forest floor. Small flowers appear in the spring shortly after the leaves have expanded. Typically, one must push the leaves aside in order to glimpse the jug-like flowers. A single flower stalk appears between the paired leaf bases, but it is short and barely lifts the flower above the soil surface. …
Insights Into The World Of Pea Nodulation Using The Low Nodulator R50,
2010
Wilfrid Laurier University
Insights Into The World Of Pea Nodulation Using The Low Nodulator R50, Scott Clemow
Theses and Dissertations (Comprehensive)
Cytokinin oxidase (CKX) is the enzyme responsible for the degradation of cytokinin, a class of adenine-based plant hormones that stimulate cell division, among other physiological processes. The pea mutant R50 is characterized by having a pale leaf phenotype, dwarf stature, few lateral roots, low nodule formation, and elevated levels of endogenous cytokinins in its shoots, roots and nodules. When compared to that of the wild-type Sparkle, total CKX activity is low but the transcript levels of PsCKX1 are significantly higher. In this study, I investigated the expression of PsCKX1 throughout the development of a nodule and the localization of PsCKX1 …
Abundance Of Ssr Motifs And Development Of Candidate Polymorphic Ssr Markers (Barcsoyssr_1.0) In Soybean,
2010
USDA-ARS, Soybean Genomics and Improvement Lab., Beltsville, MD
Abundance Of Ssr Motifs And Development Of Candidate Polymorphic Ssr Markers (Barcsoyssr_1.0) In Soybean, Qijian Song, Gaofeng Jia, Youlin Zhu, David Grant, Rex T. Nelson, Eun-Young Hwang, D. L. Hyten, P. B. Cregan
Department of Agronomy and Horticulture: Faculty Publications
Simple sequence repeat (SSR) genetic markers, also referred to as microsatellites, function in map-based cloning and for marker-assisted selection in plant breeding. The objectives of this study were to determine the abundance of SSRs in the soybean genome and to develop and test soybean SSR markers to create a database of locus-specific markers with a high likelihood of polymorphism. A total of 210,990 SSRs with di-, tri-, and tetranucleotide repeats of five or more were identified in the soybean whole genome sequence (WGS) which included 61,458 SSRs consisting of repeat units of di- (≥10), tri- (≥8), and tetranucleotide (≥7). Among …
Snail Grazing Facilitates Growth Of A Bloom-Forming Alga,
2010
Sacred Heart University
Snail Grazing Facilitates Growth Of A Bloom-Forming Alga, Michele Guidone, Carol S. Thornber, Emily Field
Biology Faculty Publications
Herbivory often has a negative effect on plants. However, there is a growing number of examples, primarily in terrestrial ecosystems, where herbivory causes an increase in plant size, growth rate, and/or reproductive output. In marine ecosystems, the positive effects of herbivores on macroalgae are not as well studied, although limited evidence exists for herbivore-induced increases in macroalgal growth rates via 2 mechanisms: nutrient addition via grazer defecation, and epiphyte removal. In this study, we examined the effects of grazing by the mud snail Ilyanassa obsoleta on Ulva lactuca, the dominant bloom-forming macroalga in many New England estuaries. We found …
