Plant Biology Commons^™

Identification Of Species Of Botryosphaeriaceae Causing Bot Gummosis In Citrus In California, A.O. Adesemoye, J.S. Mayorquin, D.H. Wang, M. Twizeyimana, S.C. Lynch, Akif Eskalen

Department of Plant Pathology: Faculty Publications

Members of the Botryosphaeriaceae family are known to cause Bot gummosis on many woody plants worldwide. To identify pathogens associated with Bot gummosis on citrus in California, scion and rootstock samples were collected in 2010 and 2011 from five citrusgrowing counties in California. Symptoms observed on citrus included branch cankers, dieback, and gumming. Various fungal species were recovered from necrotic tissues of branch canker and rootstock samples. Species were identified morphologically and by phylogenetic comparison as ‘Eureka’ lemon, ‘Valencia’, ‘Washington Navel’, ‘Fukumoto’, grapefruit, ‘Satsuma’, and ‘Meyer’ lemon. Species were identified morphologically and by phylogenetic comparison of the complete sequence of …

Automated Conserved Non-Coding Sequence (Cns) Discovery Reveals Differences In Gene Content And Promoter Evolution Among Grasses, Gina Marie Turco, James C. Schnable, Brent S. Pedersen, Michael Freeling

Department of Agronomy and Horticulture: Faculty Publications

Conserved non-coding sequences (CNS) are islands of non-coding sequence that, like protein coding exons, show less divergence in sequence between related species than functionless DNA. Several CNSs have been demonstrated experimentally to function as cis-regulatory regions. However, the specific functions of most CNSs remain unknown. Previous searches for CNS in plants have either anchored on exons and only identified nearby sequences or required years of painstaking manual annotation. Here we present an open source tool that can accurately identify CNSs between any two related species with sequenced genomes, including both those immediately adjacent to exons and distal sequences separated by …

Leaf Mechanical Strength Corresponds To Water Relations In Twelve Species Of California Ferns, Breahna Gillespie

Featured Research

Mentor: Stephen D. Davis

In angiosperms and gymnosperms, mechanically strong leaves are positively correlated with dehydration-tolerance. In general, leaves that are stronger mechanically tend to be evergreen while those that are not are usually mechanically weak and deciduous in response to water stress. Avoiding water stress, especially in a chaparral Mediterranean-type climate, which receives less than 500 mm of water per year, requires energy-intensive adaptation. Ferns residing in the chaparral are presumed to adopt a similar strategy: either they maintain or abscise their pinnae in drought. It was reasoned that ferns with lower water potential and able to survive in …

Plant Micrornas Display Differential 3' Truncation And Tailing Modifications That Are Argonaute1 Dependent And Conserved Across Species, Jixian Zhai, Yuanyuan Zhao, Stacey A. Simon, Sheng Huang, Katherine Petsch, Siwaret Arikit, Manoj Pillay, Lijuan Ji, Meng Xie, Xiaofeng Cao, Bin Yu, Marja Timmermans, Bing Yang, Xuemei Chen, Blake C. Meyers

Center for Plant Science Innovation: Faculty Publications

Plant small RNAs are 3' methylated by the methyltransferase HUA1 ENHANCER1 (HEN1). In plant hen1 mutants, 3' modifications of small RNAs, including oligo-uridylation (tailing), are associated with accelerated degradation of microRNAs (miRNAs). By sequencing small RNAs of the wild type and hen1 mutants from Arabidopsis thaliana, rice (Oryza sativa), and maize (Zea mays), we found 39 truncation prior to tailing is widespread in these mutants. Moreover, the patterns of miRNA truncation and tailing differ substantially among miRNA families but are conserved across species. The same patterns are also observable in wild-type libraries from a broad …

Immunomodulatory Activity Of Sambucus Mexicana And Trichostema Lanatum On Lps Stimulated Raw 264.7 Macrophage Cells, Victoria Hester, P. Matthew Joyner

Featured Research

Chumash medicinal plants Sambucus mexicana (Mexican elderberry) and Trichostema lanatum (woolly blue curls) were tested for immunomodulatory activity. Anti-inflammatory effects were determined by treating LPS induced RAW 264.7 macrophage cells with plant extracts and measuring the levels of cytokines: tumor necrosis factor alpha (TNF-alpha) and interleukin 10 (IL-10). We hypothesized that both plants would exert immunomodulatory activity by reducing the pro-inflammatory production of TNF-alpha or by promoting M2 polarization with a concurrent increase in IL-10 production. At concentration 0.01 mg/mL woolly blue curls and Mexican elderberry demonstrated anti-inflammatory activity by reducing the concentration of TNF-alpha in vitro, while levels of …

Variation In Mechanical Strength Of Ferns In The Santa Monica And Santa Cruz Mountains, Helen I. Holmlund

Featured Research

Mentor: Stephen D. Davis

In recent years, experts in plant physiology have begun to explore the functional traits of ferns, especially in regards to their tissue-water relations. However, to our knowledge, no scientist had yet examined the relationship between fern biomechanics and physiology. We examined the mechanical properties of fern stipes (stems) and attempted to relate those properties to ecological and physiological traits. Based on our knowledge of fern anatomy, we hypothesized that stipe mechanical strength would not correlate with cavitation resistance as it does in seed-bearing plants. This assertion that mechanical strength will not relate to cavitation resistance begs …

Role Of Nucleation In Cortical Microtubule Array Organization: Variations On A Theme, Erica A. Fishel, Ram Dixit

Biology Faculty Research

The interphase cortical microtubules (CMTs) of plant cells form strikingly ordered arrays in the absence of a dedicated microtubule-organizing center. Considerable research effort has focused on activities such as bundling and severing that occur after CMT nucleation and are thought to be important for generating and maintaining ordered arrays. In this review, we focus on how nucleation affects CMT array organization. The bulk of CMTs are initiated from γ-tubulin-containing nucleation complexes localized to the lateral walls of pre-existing CMTs. These CMTs grow either at an acute angle or parallel to the pre-existing CMT. Although the impact of microtubule-dependent nucleation is …

Rate Of Shattercane × Sorghum Hybridization In Situ, Jared J. Schmidt, Jeffrey F. Pedersen, Mark L. Bernards, John L. Lindquist

Department of Agronomy and Horticulture: Faculty Publications

Cultivated sorghum [Sorghum bicolor (L.) Moench subsp. bicolor] can interbreed with a feral weedy relative shattercane [S. bicolor nothosubsp. drummondii (Steud.) de Wet ex Davidse]. Traits introduced from cultivated sorghum could contribute to the invasiveness of a shattercane population. An experiment was conducted to determine the potential for pollenmediated gene flow from grain sorghum to shattercane. Shattercane with juicy midrib (dd) was planted in soybean [Glycine max (L.) Merr.] fields during 2 yr in concentric arcs at varying distances from a 0.39 ha sorghum pollen source with dry midrib (DD). The arcs …

Interspecific Variation In Leaf-Level Biogenic Emissions Of The Bambuseae, Andrea Natalie Melnychenko

Dissertations and Theses

Plants emit a diverse range of biogenic volatile organic compounds (BVOCs) into the atmosphere, of which isoprene is the most abundantly emitted. Isoprene significantly affects biological and atmospheric processes, but the range of isoprene and BVOCs present in bamboos has not been well characterized. In this thesis I explore the range of isoprene emission found in bamboos and relate it to plant morphological and physiological characteristics. In addition, I measure and relate the entire suite of BVOCs present in the bamboos to their fundamental isoprene emission rate.

Interspecific variation in isoprene emission documented in a comprehensive survey of bamboos. Two …

Scfkmd Controls Cytokinin Signaling By Regulating The Degradation Of Type-B Response Regulators, Hyo Jung Kim, Yi-Hsuan Chiang, Joseph J. Kieber, G. Eric Schaller

Dartmouth Scholarship

Cytokinins are plant hormones that play critical roles in growth and development. In Arabidopsis, the transcriptional response to cytokinin is regulated by action of type-B Arabidopsis response regulators (ARRs). Although central elements in the cytokinin signal transduction pathway have been identified, mechanisms controlling output remain to be elucidated. Here we demonstrate that a family of F-box proteins, called the kiss me deadly (KMD) family, targets type-B ARR proteins for degradation. KMD proteins form an S-phase kinase-associated PROTEIN1 (SKP1)/Cullin/F-box protein (SCF) E3 ubiquitin ligase complex and directly interact with type-B ARR proteins. Loss-of-function KMD mutants stabilize type-B ARRs and exhibit an …

Plant Cytoskeleton: Della Connects Gibberellins To Microtubules, Ram Dixit

Biology Faculty Research

A new study reveals that DELLA proteins directly interact with the prefoldin complex, thus regulating tubulin subunit availability in a gibberellin-dependent manner. This finding provides a mechanistic link between the growth-promoting plant hormone gibberellin and cortical microtubule organization.

Functional Annotation, Transcriptional Characterization And Enzymatic Contributions Of Essential Amino Acid Biosynthesis-Related Genes, Teresa J. Clark

Masters Theses

In plants, essential amino acid biosynthesis predominantly or exclusively occurs in the plastid. The plastid in the heterokont alga Nannochloropsis oceanica is surrounded by four membranes, which add great complexity to intracellular trafficking and communication. N. oceanica genes in essential amino acid biosynthesis were functionally annotated. The biosynthesis pathways resemble the pathways in Arabidopsis thaliana, but the gene content seems to be simpler in N. oceanica.

In addition, two A. thaliana mutants with loss-of-function mutations in the aspartate kinase-homoserine dehydrogenase 2 (AK-HSDH2) gene were characterized. These ak-hsdh2 mutants demonstrate unexpected accumulation of aspartate-derived amino acids (ADAAs), particularly threonine, in …

Physiological Effects Of Low Mowing Heights, Rolling, And Foot Traffic On Creeping Bentgrass Putting Greens, Joseph Ronald Young

Graduate Theses and Dissertations

Golf course superintendents are managing creeping bentgrass (Agrostis stolonifera L.) putting greens throughout the transition zone where temperatures can exceed optimum levels for consecutive days in the summer. The stress of creeping bentgrass associated with these supraoptimal temperatures has been well documented, but the management practices implemented on putting greens to increase green speeds may exacerbate these environmental stresses. To date, the physiological effects of these management practices in combination have not been evaluated for putting green turf. The objective of this dissertation project was to determine the effect of mowing heights, light-weight rolling, and foot traffic on performance and …

Uromyces Appendiculatus In Honduras: Pathogen Diversity And Host Resistance Screening, Maricelis Acevedo, James R. Steadman, Juan C. Rosas

Department of Plant Pathology: Faculty Publications

Bean rust, caused by the fungus Uromyces appendiculatus, is a major constraint for common bean production worldwide. Virulence of U. appendiculatus collected from wild and cultivated Phaseolus spp. was examined in 28 locations across Honduras. Host accessions representing wild and domesticated Phaseolus spp. collected at the same sampling locations were evaluated for resistance against U. appendiculatus. In total, 91 pathotypes were identified from 385 U. appendiculatus isolates according to their virulence on each of the 12 host differentials. No significant difference in pathogen total virulence, measured as the mean disease score, was found between locations. However, significant differences …

Herbaceous 2013, Julia I. Chapman, Amy L. Myers, Ryan W. Mcewan

Data Files: Drew Woods Permanent Plots

Herbaceous vegetation data collected in 2013 at Drew Woods State Nature Preserve in Darke County, OH. Data key is provided in a supplemental file.

The Role Of Oswrky71 And Its Interacting Proteins In Seed Germination And Early Growth Of Cereal Grains, Margaret Ja Shin

UNLV Theses, Dissertations, Professional Papers, and Capstones

During seed germination and early seedling growth, complex molecular and physiological events occur in rice (Oryza sativa) and other cereal grains. As the seed transitions to vegetative tissue, it responds to both favorable and unfavorable environmental conditions and is vulnerable to attack by predation and disease. Although seeds are relatively small and tender in size, extensive and sophisticated molecular networks enables the immobile seed to grow, survive and adapt in its environment. One of the networks I am interested in is in the crosstalk between the gibberellin (GA) and abscisic acid (ABA) signaling pathways. These pathways are interesting because they …

Citrus Tristeza Virus-Host Interactions, W. O. Dawson, S. M. Garnsey, Satyanarayana Tatineni, S. Y. Folimonova, S. J. Harper, S. Gowda

Department of Plant Pathology: Faculty Publications

Citrus tristeza virus (CTV) is a phloem-limited virus whose natural host range is restricted to citrus and related species. Although the virus has killed millions of trees, almost destroying whole industries, and continually limits production in many citrus growing areas, most isolates are mild or symptomless in most of their host range. There is little understanding of how the virus causes severe disease in some citrus and none in others. Movement and distribution of CTV differs considerably from that of well-studied viruses of herbaceous plants where movement occurs largely through adjacent cells. In contrast, CTV systemically infects plants mainly by …

Using Student-Produced Time-Lapse Plant Movies To Communicate Concepts In Plant Biology, Marcia Harrison-Pitaniello Phd

Biological Sciences Faculty Research

Why do students think plants are “boring”? One factor may be that they do not see plant movement in real (i.e., their) time. This attitude may negatively impact their understanding of plant biology. Time-lapse movies of plants allow students to see the sophistication of movements involved in both organ development and orientation.

The objective of this project was to develop simple methods to capture image sequences for lab analysis and for converting to movies. The technology for making time-lapse movies is now easily attainable and fairly inexpensive, allowing its use for skill levels from grade school through college undergraduates. In …

Genetic Diversity Of Seed Dormancy And Molecular Evolution Of Weedy Red Rice, Te Ming Tseng

Graduate Theses and Dissertations

Rice is the grain with the third-highest global production. In the US, Arkansas is the largest rice producing state; however, an estimated 62% of the rice fields in the state are infested with red rice, and can cause up to 80% yield reduction in rice. Among its weedy traits, seed dormancy plays an important role in its persistence, and helps red rice escape weed management techniques thereby increasing the red rice soil seedbank. Red rice also has the potential to hybridize among themselves and with cultivated rice, thus resulting in diverse phenotypes and genotypes. In this study we measured variation …

Dark Green Color Index As A Method Of Real-Time In-Season Corn Nitrogen Measurement And Fertilization, Upton Siddons

Graduate Theses and Dissertations

Corn (Zea mays L.) requires higher rates of nitrogen fertilizer than any other major U.S. crop partly because N fertilizers are subject to loss through various mechanisms. Because of this, corn may suffer from inadequate nitrogen fertilization or producers may over-apply nitrogen to compensate for early-season nitrogen losses. A timely, accurate, and precise method for measuring in-season corn N status is needed to allow producers to keep nitrogen use efficiency high within a growing season.

Using appropriate software, hue, saturation, and brightness values of digital images can be combined in a dark green color index (DGCI) which is closely associated …