Genotyping-By-Sequencing
Derived High-Density Linkage Map
And Its Application To Qtl Mapping
Of Flag Leaf Traits In Bread Wheat,
2017
University of Nebraska-Lincoln
Genotyping-By-Sequencing Derived High-Density Linkage Map And Its Application To Qtl Mapping Of Flag Leaf Traits In Bread Wheat, Waseem Hussain, P. Stephen Baenziger, Vikas Belamkar, Mary J. Guttieri, Jorge P. Venegas, Amanda Easterly, Ahmed Sallam, Jesse Poland
Department of Agronomy and Horticulture: Faculty Publications
Winter wheat parents ‘Harry’ (drought tolerant) and ‘Wesley’ (drought susceptible) were used to develop a recombinant inbred population with future goals of identifying genomic regions associated with drought tolerance. To precisely map genomic regions, high-density linkage maps are a prerequisite. In this study genotyping-by-sequencing (GBS) was used to construct the high-density linkage map. The map contained 3,641 markers distributed on 21 chromosomes and spanned 1,959 cM with an average distance of 1.8 cM between markers. The constructed linkage map revealed strong collinearity in marker order across 21 chromosomes with POPSEQ-v2.0, which was based on a high-density linkage map. The reliability …
Shifts In Microbial Communities In
Soil, Rhizosphere And Roots Of Two
Major Crop Systems Under Elevated
Co2 And O3,
2017
University of Nebraska-Lincoln
Shifts In Microbial Communities In Soil, Rhizosphere And Roots Of Two Major Crop Systems Under Elevated Co2 And O3, Peng Wang, Ellen L. Marsh, Elizabeth A. Ainsworth, Andrew D. B. Leakey, Amy M. Sheflin, Daniel P. Schachtman
Department of Agronomy and Horticulture: Faculty Publications
Rising atmospheric concentrations of CO2 and O3 are key features of global environmental change. To investigate changes in the belowground bacterial community composition in response to elevated CO2 and O3 (eCO2 and eO3) the endosphere, rhizosphere and soil were sampled from soybeans under eCO2 and maize under eO3. The maize rhizosphere and endosphere α-diversity was higher than soybean, which may be due to a high relative abundance of Rhizobiales. Only the rhizosphere microbiome composition of the soybeans changed in response to eCO2, associated with an increased abundance of nitrogen …
Genomic-Enabled Prediction Accuracies
Increased By Modeling Genotype ×
Environment Interaction In Durum Wheat,
2017
International maize and Wheat Improvement Center
Genomic-Enabled Prediction Accuracies Increased By Modeling Genotype × Environment Interaction In Durum Wheat, Sivakumar Sukumaran, Diego Jarquin, José Crossa, Matthew Reynolds
Department of Agronomy and Horticulture: Faculty Publications
Genomic prediction studies incorporating genotype × environment (G×E) interaction effects are limited in durum wheat. We tested the genomic-enabled prediction accuracy (PA) of Genomic Best Linear Unbiased Predictor (GBLUP) models—six non-G × E and three G × E models—on three basic cross-validation (CV) schemes— in predicting incomplete field trials (CV2), new lines (CV1), and lines in untested environments (CV0)— in a durum wheat panel grown under yield potential, drought stress, and heat stress conditions. For CV0, three scenarios were considered: (i) leave-one environment out (CV0-Env); (ii) leave one site out (CV0- Site); and (iii) leave 1 yr out (CV0-Year). The …
Evaluation Of Jules-Crop Performance Against Site Observations Of
Irrigated Maize From Mead, Nebraska,
2017
Met Office Hadley Centre
Evaluation Of Jules-Crop Performance Against Site Observations Of Irrigated Maize From Mead, Nebraska, Karina Williams, Jemma Gornall, Anna Harper, Andy Wiltshire, Debbie Hemming, Tristan Quaife, Tim Arkebauer, David Scoby
Department of Agronomy and Horticulture: Faculty Publications
The JULES-crop model (Osborne et al., 2015) is a parametrisation of crops within the Joint UK Land Environment Simulator (JULES), which aims to simulate both the impact of weather and climate on crop productivity and the impact of croplands on weather and climate. In this evaluation paper, observations of maize at three FLUXNET sites in Nebraska (US-Ne1, US-Ne2 and US-Ne3) are used to test model assumptions and make appropriate input parameter choices. JULES runs are performed for the irrigated sites (US-Ne1 and US-Ne2) both with the crop model switched off (prescribing leaf area index (LAI) and canopy height) and with …
Science In The Supply Chain: Collaboration
Opportunities For Advancing Sustainable
Agriculture In The United States,
2017
Field to Market: The Alliance for Sustainable Agriculture
Science In The Supply Chain: Collaboration Opportunities For Advancing Sustainable Agriculture In The United States, Allison M. Thomson, Stewart Ramsey, Ed Barnes, Bruno Basso, Marlen Eve, Sasha Gennet, Patricio Grassini, Brandon Kliethermes, Marty Matlock, Eileen Mcclellen, Ed Spevak, Clifford S. Snyder, Mark D. Tomer, Chris Van Kessel, Tristram West, Grant Wick
Department of Agronomy and Horticulture: Faculty Publications
Consumers and corporations are increasingly interested in understanding the sustainability of agricultural supply chains and reducing the environmental impacts of food, fiber, feed, and fuel production. This emerging need to quantify environmental impacts from agricultural production creates an opportunity for collaboration with the scientific community. Without such collaboration, sustainability efforts risk failure by adopting unrealistic goals or misguided approaches. This commentary explores the role of science in Field to Market, a nonprofit organization developing a sustainability program for US commodity crops, and highlights opportunities to address emerging science challenges. We evaluate changes over the past 35 years in key environmental …
Genetic Characterization Of The Soybean Nested
Association Mapping Population,
2017
USDA, Agricultural Research Service
Genetic Characterization Of The Soybean Nested Association Mapping Population, Qijian Song, Long Yan, Charles Quigley, Brandon D. Jordan, Edward Fickus, Steve Schroeder, Bao-Hua Song, Yong-Qiang Charles An, David Hyten, Randall L. Nelson, Katy Rainey, William D. Beavis, Jim Specht, Brian Diers, Perry Cregan
Department of Agronomy and Horticulture: Faculty Publications
A set of nested association mapping (NAM) families was developed by crossing 40 diverse soybean [Glycine max (L.) Merr.] genotypes to the common cultivar. The 41 parents were deeply sequenced for SNP discovery. Based on the polymorphism of the single-nucleotide polymorphisms (SNPs) and other selection criteria, a set of SNPs was selected to be included in the SoyNAM6K BeadChip for genotyping the parents and 5600 RILs from the 40 families. Analysis of the SNP profiles of the RILs showed a low average recombination rate. We constructed genetic linkage maps for each family and a composite linkage map based on …
Editorial: Genomic Approaches For
Improvement Of Understudied
Grasses,
2017
University of Nebraska-Lincoln
Editorial: Genomic Approaches For Improvement Of Understudied Grasses, Keenan Amundsen, Gautam Sarath, Teresa Donze-Reiner
Department of Agronomy and Horticulture: Faculty Publications
Grasses are diverse, spanning native prairies to high-yielding grain cropping systems. They are valued for their beauty and useful for soil stabilization, pollution mitigation, biofuel production, nutritional value, and forage quality; grasses encompass the most important grain crops in the world. There are thousands of distinct grass species and many have promiscuous hybridization patterns, blurring species boundaries. Resources for advancing the science and knowledgebase of individual grass species or their unique characteristics varies, often proportional to their perceived value to society. For many grasses, limited genetic information hinders research progress. Presented in this research topic is a brief snapshot of …
Expression Of The Maize Dof1
Transcription Factor In Wheat And
Sorghum,
2017
University of Nebraska-Lincoln
Expression Of The Maize Dof1 Transcription Factor In Wheat And Sorghum, Pamela A. Pena, Truyen Quach, Shirley Sato, Zhengxiang Ge, Natalya Nersesian, Taity Changa, Ismail M. Dweikat, Madhavan Soundararajan, Tom E. Clemente
Department of Agronomy and Horticulture: Faculty Publications
Nitrogen is essential for plant growth and development. Improving the ability of plants to acquire and assimilate nitrogen more efficiently is a key agronomic parameter that will augment sustainability in agriculture. A transcription factor approach was pursued to address improvement of nitrogen use efficiency in two major commodity crops. To this end, the Zea mays Dof1 (ZmDof1) transcription factor was expressed in both wheat (Triticum aestivum) and sorghum (Sorghum bicolor) either constitutively, UBI4 promoter from sugarcane, or in a tissue specific fashion via the maize rbcS1 promoter. The primary transcription activation target of ZmDof1 …
High-Throughput Profiling And Analysis Of Plant Responses
Over Time To Abiotic Stress,
2017
Donald Danforth Plant Science Center, Saint Louis
High-Throughput Profiling And Analysis Of Plant Responses Over Time To Abiotic Stress, Kira M. Veley, Jeffrey C. Berry, Sarah J. Fentress, Daniel P. Schachtman, Ivan Baxter, Rebecca Bart
Department of Agronomy and Horticulture: Faculty Publications
Sorghum (Sorghum bicolor (L.) Moench) is a rapidly growing, high-biomass crop prized for abiotic stress tolerance. However, measuring genotype-by-environment (G x E) interactions remains a progress bottleneck. We subjected a panel of 30 genetically diverse sorghum genotypes to a spectrum of nitrogen deprivation and measured responses using high-throughput phenotyping technology followed by ionomic profiling. Responses were quantified using shape (16 measurable outputs), color (hue and intensity), and ionome (18 elements). We measured the speed at which specific genotypes respond to environmental conditions, in terms of both biomass and color changes, and identified individual genotypes that perform most favorably. With this …
Influence Of Tillage On Common Ragweed (Ambrosia Artemisiifolia) Emergence Pattern In Nebraska,
2017
University of Nebraska-Lincoln
Influence Of Tillage On Common Ragweed (Ambrosia Artemisiifolia) Emergence Pattern In Nebraska, Ethann R. Barnes, Rodrigo Werle, Lowell Sandell, John L. Lindquist, Stevan Z. Knezevic, Peter H. Sikkema, Amit J. Jhala
Department of Agronomy and Horticulture: Faculty Publications
Spring tillage is a component of an integrated weed management strategy for control of early emerging glyphosate-resistant weeds such as common ragweed; however, the effect of tillage on common ragweed emergence pattern is unknown. The objectives of this study were to evaluate whether spring tillage during emergence would influence the emergence pattern or stimulate additional emergence of common ragweed and to characterize common ragweed emergence in southeast Nebraska. A field experiment was conducted for three years (2014 to 2016) in Gage County, Nebraska in a field naturally infested with glyphosate-resistant common ragweed. Treatments consisted of a no-tillage control and three …
Evaluating Soil Physical And Chemical Properties Following Addition Of Non-Composted Spent Coffee And Tea For Athletic Fields,
2017
University of Kentucky
Evaluating Soil Physical And Chemical Properties Following Addition Of Non-Composted Spent Coffee And Tea For Athletic Fields, Shuang Zhou
Theses and Dissertations--Plant and Soil Sciences
Physical and chemical properties of non-composted spent coffee (CF) and tea (T) suggest they may have applications as soil amendments for improving poor soils. Studies were conducted to determine 1) the effect of amendments on grass growth and soil properties, 2) the effect of incorporation versus surface application of amendments on soil properties, and 3) the effect of amendment application frequency on grass growth and soil properties. In the first study, amendments were mixed with sand and planted to bermudagrass. Treatments included CF, T, and peat moss (PM) mixed with sand, and 100% sand as a control. In the second …
Pemanfaatan Empat Isolat Trichoderma Sp. Untuk Mengendalikan Penyakit Akar Gada Pada Tanaman Caisin,
2016
Program Studi Agroteknologi, Fakultas Pertanian, Universitas Jenderal Soedirman
Pemanfaatan Empat Isolat Trichoderma Sp. Untuk Mengendalikan Penyakit Akar Gada Pada Tanaman Caisin, Melinda Yudha, L. Soesanto, E. Mugiastuti
Jurnal Kultivasi
Penelitian ini bertujuan untuk mengetahui pengaruh aplikasi empat isolat Trichoderma sp. dalam mengendalikan penyakit akar gada serta pengaruhnya terhadap pertumbuhan dan hasil tanaman caisin. Penelitian ini dilaksanakan di lahan percobaan Fakultas Pertanian, Universitas Jenderal Soedirman, mulai Mei 2016 sampai bulan Juni 2016. Penelitian ini menggunakan Rancangan Acak Kelompok (RAK), yang terdiri atas 7 perlakuan dan 4 ulangan. Perlakuan terdiri atas, kontrol diinokulasikan P. brassicae, kontrol tidak diinokulasikan P. brassicae, Trichoderma sp. isolat jahe, Trichoderma sp. isolat bawang, Trichoderma sp. isolat pisang, Trichoderma sp. isolat nenas, dan fungisida berbahan aktif Azoksistrobin dan Difenokonazol. Variabel yang diamati adalah masa inkubasi, intensitas penyakit …
Pertumbuhan Eksplan Meristem Bawang Putih (Allium Sativum L.) Kultivar Tawangmangu Pada Berbagai Komposisi Kinetin Dan Ga3 In Vitro,
2016
Program Studi Agroteknologi, Fakultas Pertanian, Universitas Padjadjaran
Pertumbuhan Eksplan Meristem Bawang Putih (Allium Sativum L.) Kultivar Tawangmangu Pada Berbagai Komposisi Kinetin Dan Ga3 In Vitro, Y. Sholihin, Erni Suminar, Wieny Heriliya Rizky, G. G. Pitaloka
Jurnal Kultivasi
Bawang putih merupakan komoditas penting di Indonesia. Indonesia merupakan negara terbesar pengimpor bawang putih. Permasalahan yang dihadapi dalam teknik produksi benih secara konvensional menjadi salah satu faktor pembatas tidak optimalnya pengembangan dan penyebaran benih tersebut. Produksi benih in vitro dapat dijadikan sebagai metode alternatif dalam perbanyakan benih sumber kultivar unggul. Penelitian ini bertujuanuntuk mendapatkan komposisi kinetin dan GA3 terbaik pada media dasar MS untuk regenerasi eksplan meristemsecara in vitro.Penelitian dilaksanakan di Laboratorium Kultur JaringanBalai Pengembangan Benih Hortikultura dan Aneka Tanaman Pasir Banteng, Kecamatan Jatinangor, Kabupaten Sumedang, Provinsi Jawa Barat, yang berlangsung dari bulan April hingga Juli 2015. Eksplan yang digunakan …
Aplikasi Sitokinin Untuk Pematahan Dormansi Benih Kentang G1 (Solanum Tuberosum L.),
2016
Program Studi Agroteknologi, Fakultas Pertanian, Universitas Padjadjaran
Aplikasi Sitokinin Untuk Pematahan Dormansi Benih Kentang G1 (Solanum Tuberosum L.), Anne Nuraini, Sumadi, R. Pratama
Jurnal Kultivasi
Kentang merupakan komoditas pertanian yang mempunyai arti penting di dunia. Kentang mempunyai berbagai macam keunggulan seperti sumber protein yang tinggi, tidak mudah rusak seperti sayuran lain, dan berpotensi dalam program diversivikasi pangan. Salah satu kendala dalam produksi kentang adalah adanya fase dormansi pada masa pertumbuhan kentang. Upaya mempercepat masa dormansi tanaman adalah dengan penambahan hormon pemacu pertumbuhan. Sitokinin merupakan salah satu hormon pemacu pertumbuhan yang berperan dalam pembelahan sel. Tujuan dilakukannya penelitian ini adalah untuk mengetahui pengaruh konsentrasi sitokinin terhadap dormansi benih kentang. Penelitian ini dilakukan di laboratorium Teknologi Benih Fakultas Pertanian Universitas Padjadjaran. Sitokinin yang digunakan pada penelitian ini …
Can Sub-Saharan Africa Feed Itself?,
2016
Wageningen Agricultural University
Can Sub-Saharan Africa Feed Itself?, Martin K. Van Ittersum, Lenny G. J. Van Bussel, Joost Wolf, Patricio Grassini, Justin Van Wart, Nicolas Guilpart, Lieven Claessens, Hugo De Groot, Keith Wiebe, Daniel Mason-D'Croz, Haishun Yang, Hendrik Boogard, Pepijn A. J. Van Oort, Marloes P. Van Loon, Kazuki Saito, Ochieng Adimo, Samuel Adjei-Nsiah, Alhassane Agali, Abdullahi Bala, Regis Chikowo, Kayuki Kaizzi, Mamoutou Kouressy, Joachim H. J. R. Makoi, Korodjouma Ouattara, Kindie Tesfaye, Kenneth G. Cassman
Department of Agronomy and Horticulture: Faculty Publications
Although global food demand is expected to increase 60% by 2050 compared with 2005/2007, the rise will be much greater in sub- Saharan Africa (SSA). Indeed, SSA is the region at greatest food security risk because by 2050 its population will increase 2.5-fold and demand for cereals approximately triple, whereas current levels of cereal consumption already depend on substantial imports. At issue is whether SSA can meet this vast increase in cereal demand without greater reliance on cereal imports or major expansion of agricultural area and associated biodiversity loss and greenhouse gas emissions. Recent studies indicate that the global increase …
High Tunnel Tomato Variety Report Uri 2016,
2016
Universityof Rhode Island
High Tunnel Tomato Variety Report Uri 2016, Andy Mark Radin
University of Rhode Island Vegetable Production Research Reports
No abstract provided.
Pumpkin Variety Trial Uri 2016,
2016
[email protected]
Pumpkin Variety Trial Uri 2016, Rebecca Brown
University of Rhode Island Vegetable Production Research Reports
No abstract provided.
Butternut Squash Variety Trial Uri 2016,
2016
[email protected]
Butternut Squash Variety Trial Uri 2016, Rebecca Brown
University of Rhode Island Vegetable Production Research Reports
No abstract provided.
Salvinia Molesta: An Assessment Of The Effects And Methods Of Eradication,
2016
The University of San Francisco
Salvinia Molesta: An Assessment Of The Effects And Methods Of Eradication, Arti Lal
Master's Projects and Capstones
Salvinia molesta is an invasive aquatic fern. It is now the second worse aquatic invader in the world. Since the 1930s, it has invaded most tropical and some temperate countries. S. molesta plants grow vegetatively and can increase in size rapidly. S. molesta can form thick mats of up to 1-meter-thick. There are a number of ways these thick mats negatively affect the environment: 1) reduce light to benthic organisms, 2) reduce oxygen in the water column for other organisms, 3) accumulate as organic matter at the bottom of the water column, 4) decrease nutrients for other organisms, and 5) …
USDA-ARS
Novel Aspects Of Drosophila Suzukii (Diptera: Drosophilidae) Biology And An Improved Method For Culturing This Invasive Species With A Modified D. Melanogaster Diet, Blair J. Sampson, Trevor Mallette, Karla M. Addesso, Oscar E. Liburd, Lindsy E. Iglesias, Stephen J. Stringer, Chris T. Werle, Donna A. Shaw, Drew Larsen, John J. Adamczyk
Agricultural and Environmental Sciences Faculty Research
Drosophila suzukii (Matsumara) (Diptera: Drosophilidae), the spotted wing drosophila, is a global pest of soft fruits now rearable on a standard D. melanogaster (Meigen) diet containing the fly's own natural food: soft-skinned berries. The techniques tested here can save 40% of cultures from microbial contamination that develops after combining artificial food sources (e.g., standard drosophila media) with unsterilized host plant material (berries). A suitable ratio for mixing dietary ingredients for a vial or test-tube rearing system includes, by weight, 1 part berry tissue for oviposition, 1.5 parts dry diet media for carbohydrate, 7 parts clean water for moisture, and ∼5 …
