Horticulture Commons^™

Isoseq Transcriptome Assembly Of C3 Panicoid Grasses Provides Tools To Study Evolutionary Change In The Panicoideae, Daniel S. Carvalho, Aime Nishimwe, James Schnable

Department of Agronomy and Horticulture: Faculty Publications

The number of plant species with genomic and transcriptomic data has been increasing rapidly. The grasses—Poaceae—have been well represented among species with published reference genomes. However, as a result the genomes of wild grasses are less frequently targeted by sequencing efforts. Sequence data from wild relatives of crop species in the grasses can aid the study of domestication, gene discovery for breeding and crop improvement, and improve our understanding of the evolution of C₄ photosynthesis. Here, we used long-read sequencing technology to characterize the transcriptomes of three C₃ panicoid grass species: Dichanthelium oligosanthes, Chasmanthium laxum, and …

Adjusting Corn Nitrogen Management By Including A Mineralizable-Nitrogen Test With The Preplant And Presidedress Nitrate Tests, Jason Clark, Fabián G. Fernández, Kristen S. Veum, James J. Camberato, Paul R. Carter, Richard Ferguson, David W. Franzen, Daniel E. Kaiser, Newell R. Kitchen, C. A.M. Laboski, Emerson Nafziger, Carl J. Rosen, John E. Sawyer, John F. Shanahan

Department of Agronomy and Horticulture: Faculty Publications

The anaerobic potentially mineralizable N (PMN) test combined with the preplant (PPNT) and presidedress (PSNT) nitrate tests may improve corn (Zea mays L.) N fertilization predictions. Forty-nine corn N response experiments (mostly corn following soybean [Glycine max (L.) Merr.]) were conducted in the U.S. Midwest from 2014–2016 to evaluate the ability of the PPNT and PSNT to predict corn relative yield (RY) and N fertilizer over- and under-application rates when adjusted by PMN. Before planting and N fertilization, PPNT (0–30, 30–60, and 60–90 cm) and PMN (0–30 cm) samples were obtained. In-season soil samples were obtained at the …

Relating Four-Day Soil Respiration To Corn Nitrogen Fertilizer Needs Across 49 U.S. Midwest Fields, G. M. Bean, Newell R. Kitchen, Kristen S. Veum, James J. Camberato, Richard Ferguson, Fabian G. Fernandez, David W. Franzen, Carrie A.M. Laboski, Emerson Nafziger, John E. Sawyer, Matt Yost

Department of Agronomy and Horticulture: Faculty Publications

Soil microbes drive biological functions thatmediate chemical and physical processes necessary for plants to sustain growth. Laboratory soil respiration has been proposed as one universal soil health indicator representing these functions, potentially informing crop and soil management decisions. Research is needed to test the premise that soil respiration is helpful for profitable in-season nitrogen (N) rate management decisions in corn (Zea mays L.). The objective of this research was two-fold: (i) determine if the amount of N applied at the time of planting effected soil respiration, and (ii) evaluate the relationship of soil respiration to corn yield response to …

Adding A Late Fall Application Of Proxy (Ethephon) Before Two Traditional Spring Applications Improves Seedhead Control Of Annual Bluegrass, Zachary Reicher, Matthew Sousek, Aaron J. Patton, Adam Van Dyke, William C. Kreuser, John C. Inguagiato, Kevin M. Miele, John Brewer, Shawn D. Askew, Aaron Hathaway, Thomas A. Nikolai, Alec Kowalewski, Brian Mcdonald

Department of Agronomy and Horticulture: Faculty Publications

Annual bluegrass (ABG) (Poa annua L.) is a prolific seed producer in the spring on golf courses that in turn decreases aesthetic quality and trueness of ball roll on coolseason putting greens. Proxy (ethephon) applied twice in the spring after green-up is the current industry standard after the loss of Embark (mefluidide) from the turf and ornamental market. However, plant growth regulators including Proxy have been used for years to help suppressABGseedheads with inconsistent success. The primary objective of this study was to determine if ABG seedhead suppression is improved by adding a late fall application of Proxy to …

Training For Specialists Vs. Education For Agroecologists, Charles A. Francis

Department of Agronomy and Horticulture: Faculty Publications

I admit to being a slow learner. Graduate school training in agronomy at the University of California, Davis and in plant breeding at Cornell University provided me with top-quality opportunities to acquire the tools for crop improvement, plus the contacts to join professionals at the International Center for Tropical Agriculture in Colombia. As a young scientist dedicated to building on successes of the Green Revolution, I was convinced that genetic changes would solve global hunger. This had been amply demonstrated with the yield increases of wheat in Mexico and India, and with rice in Southeast Asia. Should this success not …

Validation Of Predictive Empirical Weed Emergence Models Of Abutilon Theophrasti Medik Based On Intercontinental Data, Valle Egea-Cobrero, Kevin Bradley, Isabel M. Calha, Adam S. Davis, Jose Dorado, Frank Forcella, John L. Lindquist, Christy L. Sprague, Jose L. Gonzalez-Andujar

Department of Agronomy and Horticulture: Faculty Publications

Good weed management relies on the proper timing of weed control practices in relation to weed emergence dynamics. Therefore, the development of models that predict the timing of emergence may help provide growers with tools to make better weed management decisions. The aim of this study was to validate and compare two previously published predictive empirical thermal time models of the emergence of Abutilon theophrasti growing in maize with data sets from the USA and Europe, and test the hypothesis that a robust and general weed emergence model can be developed for this species. Previously developed Weibull and Logistic models …

Comparing Water Quality For Aquaponics Systems With Different Solids Removal Methods And Biofilter Media, And Effluent Output To Grow Beds, John W. Cutt, Heather M. Joesting, Brigette A. Brinton

Honors College Theses

Aquaponics is a closed-loop, sustainable method of food production that combines fish and plant production. This method of agriculture has the potential to bring fresh, local food to food-insecure areas, but challenges remain due to high operating costs. In order to develop a strong aquaponics industry, the creation of the most efficient system designs will be critical in optimizing production. This study’s purpose was to compare water quality between two aquaponics system designs that differ in filtration and solid removal methods. System 1 used a sock filter for solid removal and Kaldnes media for biofiltration while System 2 used a …

Do Coffee Agroforestry Systems Always Improve Soil Carbon Stocks Deeper In The Soil?—A Case Study From Turrialba, Costa Rica, Nilovna Chatterjee, P. K. Ramachandran Nair, Vimala D. Nair, Abhishek Bhattacharjee, Elias De Melo Virginio Filho, Rheinhold G. Muschler, Martin R.A. Noponen

Department of Agronomy and Horticulture: Faculty Publications

Shaded perennial agroforestry systems (AFS) are regarded as desirable land‐use practices that improve soil carbon sequestration. However, most studies assume a positive correlation between above ground and below ground carbon without considering the effect of past and current land management, textural variations (silt and clay percentage), and such other site‐specific factors that have a major influence on the extent of soil C sequestration. We assessed SOC stock at various depths (0–10, 10–30, 30–60, and 60–100 cm) in shaded perennial coffee (Coffea arabica L.) AFS in a 17‐ year‐old experimental field at the Centro Agronómico Tropical de Investigación y Enseñanza, (9°53′44′′ …

Establishment Of Wildflower Islands To Enhance Roadside Health And Aesthetics, Walter Schacht, Judy Wu-Smart

Nebraska Department of Transportation: Research Reports

Wildflowers are crucial in the ecological function of the low-input roadside plant communities in terms of water andnutrient cycling, nutrient inputs such as nitrogen, total plant canopy cover, stand longevity, and provision of habitat for numerous small animals. Further, wildflowers provide critical foraging and nesting resources for birds, insects, and other wildlife. Unfortunately, habitat loss from agricultural and urban development has led to rapid population declines in wild bees and other pollinators across the US, thereby jeopardizing not only food production but also the sustainability of our natural landscapes (Kearns & Inouye, 1997). One way to mitigate wild bee decline …

Pi‑Plat: A High‑Resolution Image‑Based 3d Reconstruction Method To Estimate Growth Dynamics Of Rice Inflorescence Traits, Jaspreet Sandhu, Feiyu Zhu, Puneet Paul, Tian Gao, Balpreet K. Dhatt, Yufeng Ge, Paul E. Staswick, Hongfeng Yu, Harkamal Walia

Department of Agronomy and Horticulture: Faculty Publications

Background: Recent advances in image-based plant phenotyping have improved our capability to study vegetative stage growth dynamics. However, more complex agronomic traits such as inflorescence architecture (IA), which predominantly contributes to grain crop yield are more challenging to quantify and hence are relatively less explored. Previous efforts to estimate inflorescence-related traits using image-based phenotyping have been limited to destructive end-point measurements. Development of non-destructive inflorescence phenotyping platforms could accelerate the discovery of the phenotypic variation with respect to inflorescence dynamics and mapping of the underlying genes regulating critical yield components.

Results: The major objective of this study is to evaluate …

Long-Lasting Insecticide Netting For Protecting Tree Stems From Attack By Ambrosia Beetles (Coleoptera: Curculionidae: Scolytinae), Christopher M. Ranger, Christopher T. Werle, Peter B. Schultz, Karla M. Addesso, Jason B. Oliver, Michael E. Reding

Agricultural and Environmental Sciences Faculty Research

Ambrosia beetles (Coleoptera: Curculionidae: Scolytinae) are destructive wood-boring insects of horticultural trees. We evaluated long-lasting insecticide netting for protecting stems against ambrosia beetles. Container-grown eastern redbud, Cercis canadensis, trees were flood-stressed to induce ambrosia beetle attacks, and deltamethrin-treated netting was wrapped from the base of the stem vertically to the branch junction. Trees were deployed under field conditions in Ohio, Virginia, Tennessee, and Mississippi with the following treatments: (1) flooded tree; (2) flooded tree with untreated netting; (3) flooded tree with treated ‘standard mesh’ netting of 24 holes/cm²; (4) flooded tree with treated ‘fine mesh’ netting of 28 …

Divergent Phenotypic Response Of Rice Accessions To Transient Heat Stress During Early Seed Development, Puneet Paul, Balpreet K. Dhatt, Jaspreet Sandhu, Waseem Hussain, Larissa Irvin, Gota Morota, Paul E. Staswick, Harkamal Walia

Department of Agronomy and Horticulture: Faculty Publications

Increasing global surface temperatures is posing a major food security challenge. Part of the solution to address this problem is to improve crop heat resilience, especially during grain development, along with agronomic decisions such as shift in planting time and increasing crop diversification. Rice is a major food crop consumed by more than 3 billion people. For rice, thermal sensitivity of reproductive development and grain filling is well-documented, while knowledge concerning the impact of heat stress (HS) on early seed development is limited. Here, we aim to study the phenotypic variation in a set of diverse rice accessions for elucidating …

Pertumbuhan, Hasil, Dan Kandungan Kromium Kangkung Darat Akibat Kombinasi Macam Dan Dosis Bahan Organik Pada Media Tanam Tercemar, Intan Nurcahya, Noertjahyani, Hudaya Mulyana

Jurnal Kultivasi

Kangkung darat merupakan salah satu tanaman yang dapat menyerap logam berat. Hal ini berkaitan dengan pertumbuhan, hasil, dan keamanan kangkung sebagai bahan konsumsi. Pencemaran lahan pertanian dapat disebabkan dari kegiatan industri, salah satunya yaitu limbah penyamakan kulit yang mengandung logam berat kromium yang mengairi lahan pertanian. Pemberian bahan organik merupakan salah satu cara untuk meningkatkan hasil tanaman kangkung darat dan menyerap logam berat. Penelitian bertujuan untuk mengetahui pengaruh kombinasi macam dan dosis bahan organik pada media tercemar kromium penyamakan kulit terhadap pertumbuhan, hasil dan kandungan kromium pada tanaman kangkung darat. Penelitian ini menggunakan Rancangan Acak Kelompok (RAK) dengan sembilan perlakuan …

Pengaruh Bahan Organik Berbasis Gulma Paitan Dan Pupuk Npk Terhadap Sifat Kimia Tanah, Pertumbuhan, Dan Hasil Tomat Pada Ultisols, Intan Abas Nur Khairunnisa, Anung Slamet Dwi, Sapto Nugroho Hadi

Jurnal Kultivasi

Penelitian ini bertujuan untuk mengetahui pengaruh bahan organik gulma paitan dan pupuk NPK terhadap sifat kimia tanah (C organik, N, dan P total), serta pertumbuhan dan hasil tomat pada Ultisols. Penelitian dilaksanakan di screen house Fakultas Pertanian, Universitas Jenderal Soedirman, Purwokerto, pada bulan Juni sampai September 2018. Penelitian ini menggunakan rancangan perlakuan faktorial 3x3. Faktor pertama adalah bahan organik tumbuhan paitan, terdiri atas 3 taraf, yaitu 0, 125, dan 250 g/tanaman. Faktor kedua adalah dosis NPK, terdiri atas 3 taraf, yaitu 0; 3,61; dan 5,42 g/tanaman. Seluruh kombinasi perlakuan dialokasikan ke dalam unit percobaan dengan menggunakan Rancangan Acak Kelompok yang …

Pengaruh Suhu Penyimpanan Dan Konsentrasi Sitokinin Terhadap Pematahan Dormansi Benih Kentang (Solanum Tuberosum L.) G2, Anne Nuraini, Sumadi, Yuyun Yuwariah, Hanifah Rulistianti

Jurnal Kultivasi

Kentang (Solanum tuberosum L.) adalah salah satu komoditas yang mendapat prioritas pengembangan, karena produk tanaman ini dipakai sebagai sumber karbohidrat serta memiliki potensi dalam diversifikasi pangan. Salah satu permasalahan dalam produksi kentang adalah terbatasnya persediaan benih kentang, karena adanya fase dormansi. Percobaan ini bertujuan untuk mengetahui interaksi antara suhu penyimpanan dan konsentrasi sitokinin terhadap pematahan dormansi benih kentang. Rancangan percobaan yang digunakan adalah Rancangan Petak Terbagi (Split Plot Design) dengan tiga ulangan. Petak utama adalah suhu penyimpanan dengan tiga taraf, yaitu: suhu rendah ±10oC, suhu ruang ±25oC dan suhu tinggi ±30oC. Anak petak adalah empat taraf konsentrasi sitokinin, yaitu: 0 …

Deep Kernel And Deep Learning For Genome-Based Prediction Of Single Traits In Multienvironment Breeding Trials, José Crossa, Johannes W.R. Martini, Daniel Gianola, Paulino Pérez-Rodríguez, Diego Jarquin, Philomin Juliana, Osval Antonio Montesinos López, Jaime Cuevas

Department of Agronomy and Horticulture: Faculty Publications

Deep learning (DL) is a promising method for genomic-enabled prediction. However, the implementation of DL is difficult because many hyperparameters (number of hidden layers, number of neurons, learning rate, number of epochs, batch size, etc.) need to be tuned. For this reason, deep kernel methods, which only require defining the number of layers, may be an attractive alternative. Deep kernel methods emulate DL models with a large number of neurons, but are defined by relatively easily computed covariance matrices. In this research, we compared the genome-based prediction of DL to a deep kernel (arc-cosine kernel, AK), to the commonly used …

Respons Klon Ubi Jalar (Ipomoea Batatas L.) Var. Awachy-1 Dan Var. Biang Terhadap Aplikasi Paclobutrazol, Murgayanti, Anne Nuraini, Megianti Agtari, Agung Karuniawan

Jurnal Kultivasi

Paclobutrazol merupakan salah satu zat pengatur tumbuh yang dapat digunakan untuk memodifikasi pertumbuhan tanaman dengan cara mempertahankan keseimbangan pertumbuhan vegetatif dan generatif. Setiap genotipe tanaman akan menghasilkan respons yang berbeda terhadap pemberian paclobutrazol. Penelitian ini bertujuan untuk mengetahui interaksi antara konsentrasi paclobutrazol dengan dua klon ubi jalar serta mengetahui konsentrasi paclobutrazol yang terbaik untuk pertumbuhan dan hasil dua klon ubi jalar. Percobaan dilakukan pada bulan Februari sampai Juni 2017 di kebun Percobaan Ciparanje, Fakultas Pertanian Universitas Padjadjaran, Jatinangor, Kabupaten Sumedang, Jawa Barat pada ketinggian 750 m dpl. Jenis tanah tempat percobaan adalah Inceptisol, tipe curah hujan C menurut menurut klasifikasi …

Uji Daya Hasil Jamur Tiram Putih (Pleurotus Ostreatus) Akibat Aplikasi Jenis Nutrisi Alternatif Dengan Pendekatan Bioklimatik Di Kabupaten Karawang, Rommy Andhika Laksono

Jurnal Kultivasi

Karawang merupakan wilayah di Jawa Barat yang sangat potensial dalam pengembangan budidaya jamur tiram putih. Salah satu usaha penerapan sistem pertanian yang berkelanjutan atau sistem pertanian yang peduli lingkungan dapat dilakukan dengan pemanfaatan nutrisi alternatif dan modifikasi bioklimatik. Penelitian ini bertujuan untuk mendapatkan jenis nutrisi alternatif terbaik yang mampu memberikan produksi jamur tiram putih tertinggi pada setiap posisi baglog. Penelitian dilakukan di kumbung percobaan Fakultas Pertanian UNSIKA, Kabupaten Karawang, dari bulan Januari sampai dengan bulan Agustus 2018. Metode penelitian yang digunakan adalah Rancangan Acak Kelompok (RAK) faktorial. Perlakuan terdiri dua faktor, yaitu jenis nutrisi alternatif dan posisi baglog. Faktor jenis …

Plant Hormones Differentially Control The Sub-Cellular Localization Of Plasma Membrane Microdomains During The Early Stage Of Soybean Nodulation, Zhenzhen Qiao, Prince Zogli, Marc Libault

Department of Agronomy and Horticulture: Faculty Publications

Phytohormones regulate the mutualistic symbiotic interaction between legumes and rhizobia, nitrogen-fixing soil bacteria, notably by controlling the formation of the infection thread in the root hair (RH). At the cellular level, the formation of the infection thread is promoted by the translocation of plasma membrane microdomains at the tip of the RH. We hypothesize that phytohormones regulate the translocation of plasma membrane microdomains to regulate infection thread formation. Accordingly, we treated with hormone and hormone inhibitors transgenic soybean roots expressing fusions between the Green Fluorescent Protein (GFP) and GmFWL1 or GmFLOT2/4, two microdomain-associated proteins translocated at the tip of the …

Performance Of 10 Slicing Cucumbers In Southwest Michigan, Ron G. Goldy

Midwest Vegetable Trial Reports

Fruit quality and yield were lower than in previous Southwest Michigan Research and Extension Center slicing cucumber trials. This may primarily be to lower bee activity affecting pollination, fruit set and fruit shape. However, from this trial Bristol, SVCS0927, LS 75-1011, Darlington, and Perfect 10 deserve consideration for further commercial planting in Southwest Michigan.