Horticulture Commons^™

Comparative Genome Analysis Of Plant Ascomycete Fungal Pathogens With Different Lifestyles Reveals Distinctive Virulence Strategies, Yansu Wang, Jie Wu, Jiacheng Yan, Ming Guo, Lei Xu, Liping Hou, Quan Zou

Department of Agronomy and Horticulture: Faculty Publications

Background: Pathogens have evolved diverse lifestyles and adopted pivotal new roles in both natural ecosystems and human environments. However, the molecular mechanisms underlying their adaptation to new lifestyles are obscure. Comparative genomics was adopted to determine distinct strategies of plant ascomycete fungal pathogens with different lifestyles and to elucidate their distinctive virulence strategies. Results: We found that plant ascomycete biotrophs exhibited lower gene gain and loss events and loss of CAZyme-encoding genes involved in plant cell wall degradation and biosynthesis gene clusters for the production of secondary metabolites in the genome. Comparison with the candidate effectome detected distinctive variations between …

Biobased Sprayable Mulch Films Suppressed Annual Weeds In Vegetable Crops, Eliott Gloeb, Sibel Irmak, Loren Isom, John L. Lindquist, Samuel E. Wortman

Department of Agronomy and Horticulture: Faculty Publications

Biobased sprayable mulch (BSM) films are a potential alternative to herbicides, polyethylene plastic mulch film, and hand weeding for specialty crops. We developed a series of BSM films using locally available biomaterials [including corn (Zea mays) starch, glycerol, keratin hydrolysate, corn gluten meal, corn zein, eggshells, and isolated soy (Glycine max) protein] and tested their effects on weeds and crop yield during a total of seven greenhouse or field trials between 2017 and 2019 in Nebraska, USA. Application rates of BSM films applied in pots (greenhouse), planting holes in plastic film (field), or bed tops (field) …

Exploring Soil-Tree Interactions After Applying Organic Matter Amendments To Peach Orchards In The Subtropical Climate Of The Southeastern United States, Brian Lawrence

All Dissertations

Soil disturbance from the cultivation and intensive management of orchards in hot and humid subtropical climates can reduce soil organic matter (OM). This research explored how the addition of OM amendments impact soil and tree parameters in two field studies and how proximity to OM may elicit unique genomic response of peach roots in a split-root pot study. The first field study applied two rates of compost (1x and 2x) and subsequently reduced fertilizer applications annually to a virgin and replant orchard location. While both compost rates successfully replaced fertilizers, only the 2x rate in the replant location increased soil …

In-Field And Greenhouse Assessments Of A Selection Of Preemergent Herbicides On Newly Planted Blackberries, Kayla Knepp

Graduate Theses and Dissertations

This field trial assesses some of the preemergence herbicide options available to growers and their effect on newly transplanted blackberries (Rubus L. subgenus Rubus Watson). Weed control has recently been surveyed as a top priority for blackberry growers; however, limited preemergence herbicides are registered for new blackberry plantings. Weed control is an ongoing component of blackberry production and with few in-season postemergence herbicide options available, growers rely on preemergence herbicides to maintain clean fields. The preemergent herbicides assessed in this trial were chosen with the intention to broaden the chemical control options available to growers in new plantings. A two-year …

Etiology And Epidemiology Of Mini-Ring In Ultradwarf Bermudagrass Putting Greens, Lukas Dant

All Dissertations

Mini-ring is a disease in ultradwarf bermudagrass (UDBG) [Cynodon dactylon (L.) Pers. × C. transvaalensis (Burtt-Davy)] putting greens caused by Waitea zeae (Voorhees) J.A. Crouch & Cubeta, (formerly Rhizoctonia zeae). Symptoms typically resemble frog-eye patches that are 10 to 40 cm in diameter with a bronze to orange outer ring and green center. In the southeastern United States, mini-ring symptoms appear in late-summer and generally persist until UDBG dormancy in late-fall. Mini-ring is often problematic in UDBG when nitrogen (N) fertility is reduced to manage organic matter production and improve putting green performance and perceived green speed. While …

Nitrogen Use Efficiency Of Pretassel Nitrogen Applications In Corn, Robyn Brittlee Mulloy

Graduate Theses and Dissertations

Corn (Zea mays L.) production continues to be a critical component of row-crop production systems within Arkansas and is seeing a resurgence in recent years. Nitrogen (N) is critical for corn growth and is often one of the single largest input costs associated with corn production. Research objectives for this study were to determine the nitrogen use efficiency (NUE) of late season N applications as influenced by sidedress N rate and timing of pretassel application and to quantify the nutrient uptake and partitioning in modern era corn hybrids within a furrow-irrigated production system. Research was conducted at the Milo J. …

A Non-Destructive Approach For Measuring Rice Panicle-Level Photosynthetic Responses Using 3d-Image Reconstruction, Jaspinder Singh Dharni, Balpreet Kaur Dhatt, Puneet Paul, Tian Gao, Tala Awada, Harel Bacher4, Zvi Peleg, Paul E. Staswick, Jason Hupp, Hongfeng Yu, Harkamal Walia

Department of Agronomy and Horticulture: Faculty Publications

Background: Our understanding of the physiological responses of rice inflorescence (panicle) to environmental stresses is limited by the challenge of accurately determining panicle photosynthetic parameters and their impact on grain yield. This is primarily due to the lack of a suitable gas exchange methodology for panicles and non-destructive methods to accurately determine panicle surface area.

Results: To address these challenges, we have developed a custom panicle gas exchange cylinder compatible with the LiCor 6800 Infra-red Gas Analyzer. Accurate surface area measurements were determined using 3D panicle imaging to normalize the panicle-level photosynthetic measurements. We observed differential responses in …

Anemone Cut Flower Production Budget, One High Tunnel, Northern Utah, 2022, Shannon Rauter, Melanie Stock, Ruby Ward

All Current Publications

This budget contains costs (preplant and site preparation, establishment and maintenance, and harvest and processing) and returns for the production and sale of anemone cut flowers that were grown in a high tunnel (14 feet by 40 feet). Production methods, yield, costs, and pricing were determined from Utah State University (USU) research trials, as well as feedback from Northern Utah producers. The costs and returns represent typical production in Northern Utah but should be adjusted where necessary for individual situations. Site selection, tunnel use, variety, harvest timing, pest management, and other practices will impact costs and returns to a cut-flower …

The Backyard Garden - Pea Pests, Bridger Carey, Nick Volesky, Marion Murray

All Current Publications

As part of a series, The Backyard Garden, this fact sheet reviews pea pests. It includes general information, symptoms, and management for the following pea pest issues: thrips, spider mites, pea weevil, aphids, pea leaf weevil, damping-off, powdery mildew, fusarium wilt, fusarium root rot, and bacterial blight.

The Backyard Garden - Bean Pests, Nick Volesky, Bridger Carey, Marion Murray

All Current Publications

As part of a series, The Backyard Garden, this fact sheet examines bean pests. Insects and other pests include thrips, spider mites, cutworms and armyworms, Mexican bean beetle, and seedcorn maggot. Diseases include bean common mosaic virus, damping-off, beet curly top virus, common bacterial blight, and halo blight. The fact sheet includes general information about these issues, signs and symptoms on plants, and management.

2022 Seedless Pickling Cucumber Cultivar Trial, Ben Phillips, Jenny Schoonmaker

Midwest Vegetable Trial Reports

A pickling cucumber cultivar trial was planted at the Southwest Michigan Research and Extension Center (42.088261, -86.351980, Benton Harbor, Michigan). Bejo (BJ), Nunhems (NU), and Rijk Zwaan (RZ) seed companies donated parthenocarpic (seedless) cultivars for mechanical once-over harvest. Overall trial quality was marginal due to being the first trial on a new research farm with different equipment parameters, task procedures, and responsibilities. Factors affecting trial quality were logged for next year’s trial, and include machine planting, incorporating the entire nitrogen recommendation ahead of planting, and adjusting final plant population to 30 inch row spacings.

Bison Movements Change With Weather: Implications For Their Continued Conservation In The Anthropocene, Nicholas A. Mcmillan, Samuel D. Fuhlendorf, Barney Luttbeg, Laura E. Goodman, Craig A. Davis, Brady W. Allred, Robert G. Hamilton

Department of Agronomy and Horticulture: Faculty Publications

Animal movement patterns are affected by complex interactions between biotic and abiotic landscape conditions, and these patterns are being altered by weather variability associated with a changing climate. Some animals, like the American plains bison (Bison bison L.; hereafter, plains bison), are considered keystone species, thus their response to weather variability may alter ecosystem structure and biodiversity patterns. Many movement studies of plains bison and other ungulates have focused on point-pattern analyses (e.g., resource-selection) that have provided information about where these animals move, but information about when or why these animals move is limited. For example, information surrounding the …

2022 Specialty Pepper Cultivar Trial, Ben Phillips, Jenny Schoonmaker

Midwest Vegetable Trial Reports

A specialty pepper cultivar trial was planted at the Southwest Michigan Research and Extension Center (42.081985, -86.354087, Benton Harbor, Michigan). Bejo (BJ), Johnny’s Seeds (JO), Seminis (SE), Tozer (TZ), and US Agriseeds (UA) seed companies donated six jalapeno cultivars, nine lunchbox cultivars, and two tapered 5-inch cultivars for plastic-mulch bedded and trellised hand harvest. Trial quality was excellent.

2022 Summer Squash Cultivar Trial, Ben Phillips, Jenny Schoonmaker

Midwest Vegetable Trial Reports

A summer squash cultivar trial was planted at the Southwest Michigan Research and Extension Center (42.081985, -86.354087, Benton Harbor, Michigan). HM Clause (HM), PanAmerican (PA), Rupp (RP), Sakata (SK), and US Agriseeds (UA) seed companies donated four zucchini cultivars, three patty pan cultivars, and one yellow summer squash cultivar for plastic-mulch bedded hand harvest. Trial quality was excellent.

2022 Bell Pepper Cultivar Trial, Ben Phillips, Jenny Schoonmaker

Midwest Vegetable Trial Reports

A bell pepper cultivar trial was planted at the Southwest Michigan Research and Extension Center (42.081985, -86.354087, Benton Harbor, Michigan). Enza Zaden (EZ), HM Clause (HM), PanAmerican (PA), Seminis (SE), and Sakata (SK) seed companies donated bell pepper cultivars for plastic-mulch bedded and trellised hand harvest. Overall trial quality was excellent, however environmental conditions increased the numbers of choppers during the 2nd and 3rd pickings. In the future, we will not pick small fruit because there is no market for them.

The Backyard Garden - Tomato Pests, Nick Volesky, Marion Murray

All Current Publications

This fact sheet contains information about pests and diseases that affect tomatoes. It includes general information and guidance on severity, other hosts, symptoms, and management.

The Backyard Garden - Cole Crops Pests, Nick Volesky, Marion Murray

All Current Publications

This fact sheet contains information about pests and diseases that affect cole crops. Cole crops are plants that belong to the mustard (Brassica) family, including hardy, cool-season crops such as broccoli, kohlrabi, cabbage, rutabaga, cauliflower, kale, Brussels sprouts, and turnips. The fact sheet offers general information and guidance on severity, other hosts, symptoms, and management.

The Backyard Garden - Leafy Greens Pests, Nick Volesky, Marion Murray

All Current Publications

This fact sheet provides information about the diseases that affect leafy greens. It includes general information, other hosts, disease symptoms to watch for, and management options.

The Genome Of Orychophragmus Violaceus Provides Genomic Insights Into The Evolution Of Brassicaceaepolyploidizationandits Distinct Traits, Kang Zhang, Yinqing Yang, Xin Zhang, Lingkui Zhang, Yu Fu, Zhongwei Guo, Shumin Chen, Jian Wu, James C. Schnable, Keke Yi, Xiaowu Wang, Feng Cheng

Department of Agronomy and Horticulture: Faculty Publications

Orychophragmus violaceus, referred to as ‘‘eryuelan’’ (February orchid) in China, is an early-flowering ornamental plant. The high oil content and abundance of unsaturated fatty acids in O. violaceus seeds make it a potential high-quality oilseed crop. Here, we generated a whole-genome assembly for O. violaceus using Nanopore and Hi-C sequencing technologies. The assembled genome of O. violaceus was ~1.3 Gb in size, with 12 pairs of chromosomes. Through investigation of ancestral genome evolution, we determined that the genome of O. violaceus experienced a tetraploidization event from a diploid progenitor with the translocated proto-Calepineae karyotype. Comparisons between the reconstructed subgenomes …

Novel Single-Nucleotide Variants For Morpho-Physiological Traits Involved In Enhancing Drought Stress Tolerance In Barley, Ibrahim S. Elbasyoni, Shamseldeen Eltaher, Sabah Morsy, Alsayed M. Mashaheet, Ahmed M. Abdallah, Heba G. Ali, Samah A. Mariey, P. Stephen Baenziger, Katherine Anna Frels

Department of Agronomy and Horticulture: Faculty Publications

Barley (Hordeum vulgare L.) thrives in the arid and semi-arid regions of the world; never-theless, it suffers large grain yield losses due to drought stress. A panel of 426 lines of barley was evaluated in Egypt under deficit (DI) and full irrigation (FI) during the 2019 and 2020 growing seasons. Observations were recorded on the number of days to flowering (NDF), total chlorophyll content (CH), canopy temperature (CAN), grain filling duration (GFD), plant height (PH), and grain yield (Yield) under DI and FI. The lines were genotyped using the 9K Infinium iSelect single nucleotide polymorphisms (SNP) genotyping platform, which …