Population Biology Commons^™

Population Characteristics, Development Of A Predictive Population Viability Model, And Catch Dynamics For Pallid Sturgeon In The Lower Missouri River, Kirk D. Steffensen

School of Natural Resources: Dissertations, Theses, and Student Research

Population characteristics and long-term population trends of pallid sturgeon Scaphirhynchus albus in the lower Missouri River are relatively unknown. As recovery efforts continue, understanding and quantifying these characteristics and trends are critical for species recovery and future management decisions. Therefore, the objectives of this study were to determine the pallid sturgeon population characteristics, predict changes to the pallid sturgeon population based on different management and life history scenarios, and examine trot line catch dynamics in the lower Missouri River. Catch rates for pallid sturgeon collected with gill nets did not significantly change while catch rates using trot lines significantly declined …

Molecular Phylogeny Of Microhylid Frogs (Anura: Microhylidae) With Emphasis On Relationships Among New World Genera, Rafael O. De Sá, Jeffrey W. Streicher, Relebohile Sekonyela, Mauricio C. Forlani, Simon P. Loader, Eli Greenbaum, Stephen Richards, Célio F.B. Haddad

Biology Faculty Publications

Background: Over the last ten years we have seen great efforts focused on revising amphibian systematics. Phylogenetic reconstructions derived from DNA sequence data have played a central role in these revisionary studies but have typically under-sampled the diverse frog family Microhylidae. Here, we present a detailed phylogenetic study focused on expanding previous hypotheses of relationships within this cosmopolitan family. Specifically, we placed an emphasis on assessing relationships among New World genera and those taxa with uncertain phylogenetic affinities (i.e., incertae sedis).

Results: One mitochondrial and three nuclear genes (about 2.8 kb) were sequenced to assess phylogenetic relationships. We utilized an …

The Houtman Abrolhos Islands Management Plan., Department Of Fisheries Western Australia.

Fisheries Management Papers

The Houtman Abrolhos Islands Management Plan aims to describe how this vision and associated strategic objectives can be achieved over the next five years, through addressing the risks posed to the cultural and environmental heritage values of the Abrolhos.

Buchholz Black Dash (Euphyes Conspicua Buchholzi): Species Conservation Assessment, Melissa J. Panella

Nebraska Game and Parks Commission: Publications

The primary goal in development of at-risk species conservation assessments is to compile biological and ecological information that may assist conservation practitioners in making decisions regarding the conservation of species of interest. The Nebraska Natural Legacy Project recognizes the Buchholz Black Dash (Euphyes conspicua buchholzi) as a Tier I at-risk species of high conservation priority. The Buchholz Black Dash (BBD) is a subspecies of the Black Dash (Euphyes conspicua). Survival of BBD is likely to be highly influenced by available habitat in Nebraska. Some general management recommendations are made here regarding the BBD; however, conservation practitioners will need to use …

Mccown’S Longspur (Rhynchophanes Mccownii): Species Conservation Assessment, Melissa J. Panella

Nebraska Game and Parks Commission: Publications

The primary goal in development of at-risk species conservation assessments is to compile biological and ecological information that may assist conservation practitioners in making decisions regarding the conservation of species of interest. The Nebraska Natural Legacy Project recognizes the McCown’s Longspur (Rhynchophanes mccownii) as a Tier I at-risk species. Some general management recommendations are made here regarding the McCown’s Longspur (MCLO); however, conservation practitioners will need to use professional judgment to make specific management decisions based on objectives, location, and a multitude of variables. This resource was designed to share available knowledge of MCLO that will aid in the decision-making …

Swimways: Protecting Paddlefish Through Movement-Centered Management, Brenda M. Pracheil, Mark A. Pegg, Larkin A. Powell, Gerald Mestl

School of Natural Resources: Faculty Publications

Attempts to mitigate lack of formal interjurisdictional paddlefish management have been made in the United States through the Mississippi River Interstate Cooperative Resource Association (MICRA). We used 1988–2009 data from the MICRA paddlefish (Polyodon spathula) stock assessment database—a database containing mark–recapture and biometric information on more than 30,000 individually marked wild paddlefish and more than 2 million hatchery-origin paddlefish—to estimate survival and movement across large and potentially biologically relevant spatial scales. Paddlefish frequently moved between political jurisdictions with differing conservation strategies and harvest regulations and showed differences in survival parameter estimates throughout their range. We argue that the degree of …

Interactions Between Short-Beaked Common Dolphin (Delphinus Delphis) And The Winter Pelagic Pair-Trawl Fishery Ff Southwest England (Uk), Marijke N. De Boer, James T. Saulino, Mardik F. Leopold, Peter J.H. Reijnders, Mark P. Simmonds

Aquaculture Collection

During offshore and onshore studies (2004 to 2009), the interactions between pair-trawls and short-beaked common dolphins (Delphinus delphis) were studied to better understand the impact of bycatch. A ‘hotspot’ area where pair-trawls overlapped with high dolphin abundance was identified. We made comparisons between boat-based data collected in absence and presence of pair-trawlers. The relative abundance and group-size of dolphins was significantly higher in the presence of pair-trawlers. Dolphins were observed associating with towing and hauling procedures. Significantly, more carcasses occurred in areas with hauling-activity than those without. Body-temperatures obtained from carcasses found near operating pair-trawlers indicated that bycatch mostly occurred …

A Review Of The Management Arrangements And Licensing Framework For The Aquatic Tour Industry In Western Australia. Discussion Paper On Management And Licensing Options For The Aquatic Tour Industry., Department Of Fisheries Western Australia

Fisheries Management Papers

The Department of Fisheries (Department) is proposing a new simplified management approach which focuses on fishing as the core criteria in the new licensing framework. Given the low level of impact of aquatic eco-tours and shore-based fishing, consideration is being given to removing the need for these activities to be formally licensed. The Department is of the view that these activities can be adequately managed by regulations that have broader application across the community.

The current management, licensing and fee structures are complex and provide limited business flexibility. A simplified management approach will also improve the Department’s capacity to monitor …

Who Else Would Plant The Trees? A Status Update On The Pemba Flying Fox, Hannah “Hawa” Grose, Catherine Grace “Rahma” Clemmens

Independent Study Project (ISP) Collection

This study assesses the current population of Pemba Flying Fox, Pteropusvoeltzkowi, at four key locations on Pemba Island off the coast of Tanzania previously noted as highly populated roost sites: Ngezi National Forest, Wete, Kidike, and MsituwaMbiji. We evaluate local knowledge, perceptions, and practices of communities surrounding the Pemba Flying Fox. This study also documents roosting and migratory patterns of the bats. We hypothesize a growth in bat population, an overall positive community perception of the bats, and a greater amount of conflict between fruit farmers and Pteropusvoeltzkowi. Results showed a decrease in estimated population. Additionally, reverse correlation was found …

Behavioral And Physiological Female Responses To Male Sex Ratio Bias In A Pond-Breeding Amphibian, Kristine L. Grayson, Stephen P. De Lisle, Jerrah E. Jackson, Samuel J. Black, Erica J. Crespi

Biology Faculty Publications

Introduction: The phenomenon of sexual conflict has been well documented, and in populations with biased operational sex ratios the consequences for the rarer sex can be severe. Females are typically a limited resource and males often evolve aggressive mating behaviors, which can improve individual fitness for the male while negatively impacting female condition and fitness. In response, females can adjust their behavior to minimize exposure to aggressive mating tactics or minimize the costs of mating harassment. While male-male competition is common in amphibian mating systems, little is known about the consequences or responses of females. The red-spotted newt (Notophthalmus …

What Is The Predictive Power Of The Colobine Protein-To-Fiber Model And Its Conservation Value?, Jan F. Gogarten, Melissa Guzman, Colin A. Chapman, Aerin L. Jacob, Patrick A. Omeja, Jessica Rothman

Publications and Research

Predicting variation in animal abundance across time and space has proven very difficult; however, a model exists to predict the biomass of small folivorous primates that has considerable correlative support. This model suggests that the protein-to-fiber ratio of leaves in a habitat can predict folivore biomass. Here we present an experimental test of this protein-to-fiber model to assess if the number of infant monkeys per female and group size can be predicted based on the leaf chemistry of a habitat. We expected regenerating forest in Kibale National Park, Uganda to have leaves with higher concentrations of crude protein and lower …

Status Of The State-Endangered Mussel, Ligumia Nasuta, In The Upper Cuyahoga River, Rachel E. Andrikanich, Stephanie A. Sredniawa

Undergraduate Research Posters 2012

The primary objective of our research was to assess population size and range of Ligumia nasuta, the Eastern Pond mussel in the Cuyahoga River watershed. We conclude that the Eastern Pond mussel may be all but gone from the East Branch and West Branch Cuyahoga Rivers, but may persist in better numbers in Portage County. Further studies are required before the sustainability of this species can be fully assessed.

A Tale Of Two Haplotypes: The Eda2r/Ar Intergenic Region Is The Most Divergent Genomic Segment Between Africans And East Asians In The Human Genome, Amanda M. Casto, Brenna M. Henn, Jeffery M. Kidd, Carlos D. Bustamante, Marcus W. Feldman

Human Biology Open Access Pre-Prints

Single nucleotide polymorphisms (SNPs) with large allele frequency differences between human populations are relatively rare. The longest run of SNPs with an allele frequency difference of one between the Yoruba of Nigeria and the Han Chinese is found on the long arm of the X chromosome in the intergenic region separating the EDA2R and AR genes. It has been proposed that the unusual allele frequency distributions of these SNPs are the result of a selective sweep affecting African populations that occurred after the Out-of-Africa migration. To investigate the evolutionary history of the EDA2R/AR intergenic region, we characterized the haplotype structure …

Plains Harvest Mouse (Reithrodontomys Montanus Griseus): Species Conservation Assessment, Melissa J. Panella

Nebraska Game and Parks Commission: Publications

The primary goal in development of at-risk species conservation assessments is to compile biological and ecological information that may assist conservation practitioners in making decisions regarding species of interest. The Nebraska Natural Legacy Project recognizes the plains harvest mouse (Reithrodontomys montanus griseus) as a Tier I at-risk species of high conservation need. Some general management recommendations are made here regarding the plains harvest mouse; however, conservation practitioners will need to use professional judgment to make specific management decisions based on objectives, location, and a multitude of variables. This resource was designed to share available knowledge of the plains harvest mouse …

Topeka Shiner (Notropis Topeka): Species Conservation Assessment, Melissa J. Panella

Nebraska Game and Parks Commission: Publications

The primary goal in development of at-risk species conservation assessments is to compile biological and ecological information that may assist conservation practitioners in making decisions regarding the conservation of species of interest. The Nebraska Natural Legacy Project recognizes the Topeka shiner (Notropis topeka) as a Tier I at-risk species of high priority for conservation. Some general management recommendations are made here regarding Topeka shiners; however, conservation practitioners will need to use professional judgment to make specific management decisions based on objectives, location, and a multitude of variables. This resource was designed to share available knowledge of the Topeka shiner that …

High Prevalence Of The Amphibian Chytrid Fungus (Batrachochytrium Dendrobatidis) Across Multiple Taxa And Localities In The Highlands Of Ethiopia, David J. Gower, Thomas M. Doherty-Bone, Roman K. Aberra, Abebe Mengistu, Silvia Schwaller, Michele Menegon, Rafael O. De Sá, Samy A. Saber, Andrew A. Cunningham, Simon P. Loader

Biology Faculty Publications

Surveys of the potentially lethal amphibian chytrid fungus (Batrachochytrium dendrobatidis - Bd) in Africa are patchy, especially in some regions of high species endemicity. We present results of the first Bd surveys of wild amphibians in Ethiopia, for two upland regions on either side of the Rift Valley: the Bale Mountains and the Kaffa region. Surveys were opportunistic so that robust interpretation of the data is limited. Utilizing diagnostic qPCR assays, 51 out of 120 frogs (14 species in 10 genera) tested positive for Bd at altitudes of 1,620–3,225 m, across all genera and species, and all but …

The Development Of Dermatonotus Muelleri (Anura: Microhylidae: Gastrophryninae), Marissa Fabrezi, Silvia Quinzio, Javier Goldberg, Rafael O. De Sá

Biology Faculty Publications

The monophyly of Microhylidae is supported by an overwhelming accumulation of synapomorphic larval features. Despite the distinctiveness of the microhylid tadpole, few studies have focused on larval development. Microhylid larval morphology is usually described and based on standard tables that imply that developmental events at equivalent stages of overall tadpole development are independent from species-specific patterns of developmental timing. Herein, we present additional developmental data based on external morphology and field data on larval growth for the gastrophrynine microhylid Dermatonotus muelleri. We describe internal morphological variation (e.g., skeletal and soft systems) during larval development. The results indicate that the onset …

Comparative Phylogeography Of Central African Duikers Using Non-Invasive Sampling Methods, Stephan Ntie

LSU New Orleans Theses and Dissertations

The present study sets out to assess patterns of evolutionary diversification in central African duikers (subfamily Cephalophinae). The sampling strategy consisted of collecting geo-referenced duiker feces across 43 sites and seven countries. However, several challenges related to the use of non-invasive samples needed to be addressed prior to large scale DNA amplification. First, the best storage method for obtaining DNA from fecal samples needed to be established. Our study revealed that while silica is best for nuclear microsatellite analyses, RNAlater is the best storage medium for maximal mitochondrial amplification. Moreover, extracting DNA as early as possible always provided the …

A Genetic Survey Of English Sole Populations In The Salish Sea, Elizabeth S. Gutierrez, Gary A. Winans, Jon Baker, Amanda Cope

STAR Program Research Presentations

This summer I interned at the Northwest Fisheries Science Center in Seattle, WA and participated in NOAA’s Salish Sea Project. The Salish Sea Project’s goal is to identify genetically distinctive groups of species in the Salish Sea that may have unique evolutionary and/or adaptive backgrounds. These findings will allow NOAA to promote and monitor the natural production of species in the Salish Sea, to select representative populations for experimental work regarding pollution, ocean acidification and climate change, to contribute to managing the ecosystem for intra- and inter-species diversity, and to help make informed decisions about adaptive management and marine protected …

Developing Monitoring Methods For Leptasterias Spp. As Sentinel Species In Detecting Local Environmental Changes, Zachary Sturbaum, Kathryn Nuessly, Riley J. Smith, C. Sarah Cohen

STAR Program Research Presentations

Leptasterias spp., a six-rayed sea star, is found in rocky intertidal habitats ranging from Alaska to central California. Leptasterias spp. can be monitored on a broad scale throughout their range by a variety of means using timed counts and random plot censusing in order to detect both large-scale and local-level changes in the environment due to climate change, land-based human activity, or other environmental events. Leptasterias brood their young externally until the embryos grow into fully developed juveniles. These juveniles disperse by crawling away, limiting their dispersal potential. This localized dispersal provides an opportunity to use Leptasterias spp …