Population Biology Commons^™

Genetic Diversity Of North American Captive-Born Gorillas (Gorilla Gorilla Gorilla), Noah D. Simmons, Ronald S. Wagner, Joseph G. Lorenz

All Faculty Scholarship for the College of the Sciences

Western lowland gorillas (Gorilla gorilla gorilla) are designated as critically endangered and wild populations are dramatically declining as a result of habitat destruction, fragmentation, diseases (e.g., Ebola) and the illegal bushmeat trade. As wild populations continue to decline, the genetic management of the North American captive western lowland gorilla population will be an important component of the long‐term conservation of the species. We genotyped 26 individuals from the North American captive gorilla collection at 11 autosomal microsatellite loci in order to compare levels of genetic diversity to wild populations, investigate genetic signatures of a population bottleneck and identify …

Pushing Taxonomy To Extiction?, Alessandro Minelli, Annemarie Ohler, Erna Aescht, Aaron Bauer, Lucio Bonato, Roger Bour, Marcelo Rodrigues De Carvalho, Rafael O. De Sá, Et Al.

Biology Faculty Publications

Can we describe all species on Earth before they disappear? We argue that this is possible only by endowing taxonomy with professional manpower and appropriate material resources as required by big science.

Contrary to Costello et al.’s (CMS) (1) statements, taxonomy is not an easy discipline accessible to all through a smartphone. It requires exhaustive training and long familiarity with field, specimens and literature (2).

CMS’s argument is framed in terms of species numbers, but different, non-overlapping species concepts apply to bacteria, brambles and birds (3,4,5): “the species” as common unit of biodiversity does not exist (6).

Even ignoring this …

The Population Dynamics Of Two Rodents In Two Coastal Marshes In Virginia, Robert K. Rose, John A. March

Virginia Journal of Science

The communities of small mammals were evaluated for 13 months with capture-mark-recapture methods in two Spartina-Juncus marshes of the Atlantic coast in Northampton County, Virginia. Small mammals were trapped for three days each month using live traps placed on floats on two study grids. Two rodents were numerically dominant (~90% of small mammals) there: marsh rice rat, Oryzomys palustris, and meadow vole, Microtus pennsylvanicus. Monthly estimates of population density were greater for rice rats (peak: 45/ha) than for those of meadow voles (peak: 30/ha). Survival rates were generally low, especially for rice rats, indicating highly vagile populations. Both …

Conus: First Comprehensive Conservation Red List Assessment Of A Marine Gastropod Mollusc Genus, Howard Peters, Bethan C. O'Leary, Julie P. Hawkins, Kent E. Carpenter, Callum M. Roberts

Biological Sciences Faculty Publications

Marine molluscs represent an estimated 23% of all extant marine taxa, but research into their conservation status has so far failed to reflect this importance, with minimal inclusion on the authoritative Red List of the International Union for the Conservation of Nature (IUCN). We assessed the status of all 632 valid species of the tropical marine gastropod mollusc, Conus (cone snails), using Red List standards and procedures to lay the groundwork for future decadal monitoring, one of the first fully comprehensive global assessments of a marine taxon. Three-quarters (75.6%) of species were not currently considered at risk of extinction owing …

Family Matters: An Analysis Of Genetic Relatedness Of Tetraclita Rubescens (The Pink Volcano Barnacle) Over Several Spatial Scales At Monterey And Bodega Bay, California, Kelly N. Chang

Scripps Senior Theses

Inbreeding involves the mating of closely related individuals at a higher frequency than at random; this can decrease the average fitness of populations and individuals by reducing the presence of heterozygotes and augmenting the expression of deleterious genes. Since marine invertebrates exhibit widespread dispersal, their potential for inbreeding is often disregarded. The adult sessile state of barnacles creates the potential for inbreeding as a result of necessary copulation between neighboring individuals. Depending on the degree of mixing that occurs during dispersal, closely related individuals or siblings may settle in close proximity, generating the possibility of kin aggregation and consequent inbreeding. …

Global Attracting Equilibria For Coupled Systems With Ceiling Density Dependence, Eric A. Eager, Mary Hebert, Elise Hellwig, Francisco Hernandez, Richard Rebarber, Brigitte Tenhumberg, Bryan Wigianto

School of Biological Sciences: Faculty Publications

In this paper, we present a system of two difference equations modeling the dynamics of a coupled population with two patches. Each patch can house only a limited number of individuals (called a carrying capacity) because resources like food and breeding sites are limited in each patch. We assume that the population in each patch is governed by a linear model until reaching a carrying capacity in each patch, resulting in map which is nonlinear and not sublinear. We analyze the global attractors of this model.

Mutation From Arginine To Lysine At The Position 189 Of Hemagglutinin Contributes To The Antigenic Drift In H3n2 Swine Influenza Viruses, Jianqiang Ye, Yifei Xu, Jillian Harris, Hailiang Sun, Andrew S. Bowman, Fred L. Cunningham, Carol Cardona, Kyoungjin J. Yoon, Richard D. Slemons, Xiu-Feng Wan

United States Department of Agriculture Wildlife Services: Staff Publications

Two distinct antigenic clusters were previously identified among the H3N2 swine influenza A viruses (IAVs) and were designated H3N2SIV-alpha and H3N2SIV-beta (Feng et al., 2013. Journal of Virology 87(13), 7655–7667). A consistent mutation was observed at the position 189 of hemagglutinin (R189K) between H3N2SIV-alpha and H3N2SIV-beta fair isolates. To evaluate the contribution of R189K mutation to the antigenic drift from H3N2SIV-alpha to H3N2SIV-beta, four reassortant viruses with189R or189K were generated. The antigenic cartography demonstrated that the R189K mutation in the hemagglutinin of H3N2IAV contributed to the antigenicdrift, separating these viruses into H3N2SIV-alpha to H3N2SIV- beta. This R189K mutation was also …

Metapopulation Theory Explains Black-Stripe Minnow (Pisces: Galaxiidae, Galaxiella Nigrostriata) Distribution In Seasonal Wetlands In South-West Western Australia, David M. Galeotti

Theses: Doctorates and Masters

The objective of this project was to determine if Galaxiella nigrostriata populations could belong to a metapopulation. Metapopulation theory describes how multiple populations with occasional connectivity are a ‘population of populations’. Some populations’ habitats have optimal conditions (source habitats), others experience regular extinctions (sink habitats). Connectivity allows repopulation of extinct or uninhabited habitats. Galaxiella nigrostriata occurred randomly in 11 seasonal wetlands in the Kemerton wetland complex in south-west Western Australia over a 16 year period. The wetlands did not appear to be connected.

Around 70% of wetlands on the Swan Coastal Plain in south-west WA have been filled or degraded …

A Reassessment Of The Conservation Status Of A Critically Endangered Neotropical Frog, Mannophryne Olmonae, Using Occupancy Modeling Techniques, Jessica Mcquigg

Senior Independent Study Theses

Amphibian species worldwide are threatened with decline and extinction, making species monitoring an important scientific endeavor. The Bloody Bay Poison Frog, Mannophryne olmonae, a Tobago island endemic, was identified as critically endangered by the IUCN in 2004. Recent evidence suggests that a less severe conservation status may be appropriate for M. olmonae. This study employs acoustic calling surveys, land-use information, and multi-year (2011 and 2012) occupancy modeling techniques to propose an appropriate conservation status for this species. This study suggests that M. olmonae occupies a larger geographic range than was previously thought, and is not experiencing population declines. …

Horseshoe Crab Eggs: A Rare Resource For Predators In Long Island Sound, Mark Beekey, Jennifer Mattei, Barbara J. Pierce

Biology Faculty Publications

In Delaware Bay, the spawning of several million horseshoe crabs (Limulus polyphemus) coincides with the arrival of migratory shorebirds that feed on their eggs. High horseshoe crab spawning densities and resulting high egg densities drive egg availability and predation rates. At high spawning densities, female horseshoe crabs perturb previously deposited clutches causing eggs to rise to the sediment surface (surface egg densities average 100,000 eggs m^{− 2}). At the surface (0–5 cm), the eggs are quickly depleted by shorebirds and other predators. This interaction between egg density and egg predation has not been explicitly explored on …

A Study Of The Spatial Dynamics Of Some Introduced Avian Species In The Southwest Region Of Western Australia, Desiree L. Moon

Theses: Doctorates and Masters

The Southwest region of Western Australia is a recognised ‘biodiversity hotspot’, as it possesses high levels of biodiversity and endemism; it also holds a number of species threatened by habitat loss. The arrival of Europeans in the region wrought major changes on the natural landscape. Extensive tracts of bushland were cleared for housing, infrastructure, forestry, farming, and mining. Another challenge to regional biodiversity was the spread of exotic plants and animals (including birds); the latter provide the focus for the present study. The research examines four bird species that colonised the Southwest region following European settlement: Australian White Ibis (Threskiornis …

Ghost Tiger Beetle (Cicindela Lepida): Species Conservation Assessment, Melissa J. Panella

Nebraska Game and Parks Commission: Publications

The primary goal in development of at-risk species conservation assessments is to compile biological and ecological information that may assist conservation practitioners in making decisions regarding the conservation of species of interest. The Nebraska Natural Legacy Project recognizes the ghost tiger beetle, a.k.a. white tiger beetle, (Cicindela lepida) as a Tier I at-risk species of high conservation priority. Some general management recommendations are made here regarding ghost tiger beetles; however, conservation practitioners will need to use professional judgment to make specific management decisions based on objectives, location, and a multitude of variables. This resource was designed to share available knowledge …

Population Characteristics, Development Of A Predictive Population Viability Model, And Catch Dynamics For Pallid Sturgeon In The Lower Missouri River, Kirk D. Steffensen

School of Natural Resources: Dissertations, Theses, and Student Research

Population characteristics and long-term population trends of pallid sturgeon Scaphirhynchus albus in the lower Missouri River are relatively unknown. As recovery efforts continue, understanding and quantifying these characteristics and trends are critical for species recovery and future management decisions. Therefore, the objectives of this study were to determine the pallid sturgeon population characteristics, predict changes to the pallid sturgeon population based on different management and life history scenarios, and examine trot line catch dynamics in the lower Missouri River. Catch rates for pallid sturgeon collected with gill nets did not significantly change while catch rates using trot lines significantly declined …

Molecular Phylogeny Of Microhylid Frogs (Anura: Microhylidae) With Emphasis On Relationships Among New World Genera, Rafael O. De Sá, Jeffrey W. Streicher, Relebohile Sekonyela, Mauricio C. Forlani, Simon P. Loader, Eli Greenbaum, Stephen Richards, Célio F.B. Haddad

Biology Faculty Publications

Background: Over the last ten years we have seen great efforts focused on revising amphibian systematics. Phylogenetic reconstructions derived from DNA sequence data have played a central role in these revisionary studies but have typically under-sampled the diverse frog family Microhylidae. Here, we present a detailed phylogenetic study focused on expanding previous hypotheses of relationships within this cosmopolitan family. Specifically, we placed an emphasis on assessing relationships among New World genera and those taxa with uncertain phylogenetic affinities (i.e., incertae sedis).

Results: One mitochondrial and three nuclear genes (about 2.8 kb) were sequenced to assess phylogenetic relationships. We utilized an …

The Houtman Abrolhos Islands Management Plan., Department Of Fisheries Western Australia.

Fisheries Management Papers

The Houtman Abrolhos Islands Management Plan aims to describe how this vision and associated strategic objectives can be achieved over the next five years, through addressing the risks posed to the cultural and environmental heritage values of the Abrolhos.

Buchholz Black Dash (Euphyes Conspicua Buchholzi): Species Conservation Assessment, Melissa J. Panella

Nebraska Game and Parks Commission: Publications

The primary goal in development of at-risk species conservation assessments is to compile biological and ecological information that may assist conservation practitioners in making decisions regarding the conservation of species of interest. The Nebraska Natural Legacy Project recognizes the Buchholz Black Dash (Euphyes conspicua buchholzi) as a Tier I at-risk species of high conservation priority. The Buchholz Black Dash (BBD) is a subspecies of the Black Dash (Euphyes conspicua). Survival of BBD is likely to be highly influenced by available habitat in Nebraska. Some general management recommendations are made here regarding the BBD; however, conservation practitioners will need to use …

Mccown’S Longspur (Rhynchophanes Mccownii): Species Conservation Assessment, Melissa J. Panella

Nebraska Game and Parks Commission: Publications

The primary goal in development of at-risk species conservation assessments is to compile biological and ecological information that may assist conservation practitioners in making decisions regarding the conservation of species of interest. The Nebraska Natural Legacy Project recognizes the McCown’s Longspur (Rhynchophanes mccownii) as a Tier I at-risk species. Some general management recommendations are made here regarding the McCown’s Longspur (MCLO); however, conservation practitioners will need to use professional judgment to make specific management decisions based on objectives, location, and a multitude of variables. This resource was designed to share available knowledge of MCLO that will aid in the decision-making …

Swimways: Protecting Paddlefish Through Movement-Centered Management, Brenda M. Pracheil, Mark A. Pegg, Larkin A. Powell, Gerald Mestl

School of Natural Resources: Faculty Publications

Attempts to mitigate lack of formal interjurisdictional paddlefish management have been made in the United States through the Mississippi River Interstate Cooperative Resource Association (MICRA). We used 1988–2009 data from the MICRA paddlefish (Polyodon spathula) stock assessment database—a database containing mark–recapture and biometric information on more than 30,000 individually marked wild paddlefish and more than 2 million hatchery-origin paddlefish—to estimate survival and movement across large and potentially biologically relevant spatial scales. Paddlefish frequently moved between political jurisdictions with differing conservation strategies and harvest regulations and showed differences in survival parameter estimates throughout their range. We argue that the degree of …

Interactions Between Short-Beaked Common Dolphin (Delphinus Delphis) And The Winter Pelagic Pair-Trawl Fishery Ff Southwest England (Uk), Marijke N. De Boer, James T. Saulino, Mardik F. Leopold, Peter J.H. Reijnders, Mark P. Simmonds

Aquaculture Collection

During offshore and onshore studies (2004 to 2009), the interactions between pair-trawls and short-beaked common dolphins (Delphinus delphis) were studied to better understand the impact of bycatch. A ‘hotspot’ area where pair-trawls overlapped with high dolphin abundance was identified. We made comparisons between boat-based data collected in absence and presence of pair-trawlers. The relative abundance and group-size of dolphins was significantly higher in the presence of pair-trawlers. Dolphins were observed associating with towing and hauling procedures. Significantly, more carcasses occurred in areas with hauling-activity than those without. Body-temperatures obtained from carcasses found near operating pair-trawlers indicated that bycatch mostly occurred …

A Review Of The Management Arrangements And Licensing Framework For The Aquatic Tour Industry In Western Australia. Discussion Paper On Management And Licensing Options For The Aquatic Tour Industry., Department Of Fisheries Western Australia

Fisheries Management Papers

The Department of Fisheries (Department) is proposing a new simplified management approach which focuses on fishing as the core criteria in the new licensing framework. Given the low level of impact of aquatic eco-tours and shore-based fishing, consideration is being given to removing the need for these activities to be formally licensed. The Department is of the view that these activities can be adequately managed by regulations that have broader application across the community.

The current management, licensing and fee structures are complex and provide limited business flexibility. A simplified management approach will also improve the Department’s capacity to monitor …