Other Ecology and Evolutionary Biology Commons^™

Conservation, Comparative Genomics And Species Delimitation Of The Reindeer Lichens (Cladonia), Jordan R. Hoffman

Dissertations, Theses, and Capstone Projects

The genus Cladonia represents one of the most speciose genera of lichenized fungi, with more than 500 known species encompassing a diverse array of morphologies and habits. These lichens form keystone species in many habitats, serving a variety of ecological roles. However, despite being among of the more well studied lichens, there is much still unknown or under-studied about them. As is the case with most lichen study systems, phylogenetic study has been limited to a small number of partial loci, while adoption of next-generation sequence methods has been slow. As a consequence, there are still knowledge gaps in Cladonia …

Investigating The Effects Of Climate Change On The Phenology Of Achillea Millefolium, Aquilegia Coerulea, And Penstemon Cyanocaulis, Hannah O’Toole, Kailey Hicks, Lisa Long, Jackson Garske, Anna Sher

DU Undergraduate Research Journal Archive

As the effects of climate change are starting to unearth themselves, the impacts can be observed by tracking the patterns of cyclical natural phenomena also known as phenology, and monitoring how they have changed over time. These cycles are at the crux of making ecosystems viable for their local biodiversity, and understanding the ongoing change allows for further understanding of the ecosystem’s change over time. In this study, we look at the ordinal flowering dates of the Achillea millefolium, Aquilegia coerulea, and Penstemon cyanocaulis over the past century. Our data give insight into how warmer temperatures occurring earlier in …

Evolutionary Analyses Of Visual Opsin Genes In Frogs And Toads: Diversity, Duplication, And Positive Selection, Ryan K. Schott, Leah Perez, Matthew Kwiatkowski, Vance Imhoff, Jennifer M. Gumm

Faculty Publications

Among major vertebrate groups, anurans (frogs and toads) are understudied with regard to their visual systems, and little is known about variation among species that differ in ecology. We sampled North American anurans representing diverse evolutionary and life histories that likely possess visual systems adapted to meet different ecological needs. Using standard molecular techniques, visual opsin genes, which encode the protein component of visual pigments, were obtained from anuran retinas. Additionally, we extracted the visual opsins from publicly available genome and transcriptome assemblies, further increasing the phylogenetic and ecological diversity of our dataset to 33 species in total. We found …

Ephemeroptera Culturing Methods: An Analysis On Rearing And Toxcity Testing On Sensitive Early Life Stages Of Native Mayfly Taxa, Geneve Rainette Edwards

Theses, Dissertations and Capstones

Standard toxicity testing organisms are utilized for regulatory purposes and often ecological risk assessments. Ephemeroptera taxa have been reported to be more sensitive to aquatic contaminants than the standard toxicity testing organisms currently used in determining effects on aquatic ecosystems. Establishing methods for culturing native Ephemeroptera taxa will provide a more sensitive test organism to determine the toxicity of contaminants and will be more representative of the responses of native taxa. Additionally, it will provide a test organism at the most sensitive life stages. The objective of this research is to develop methods for culturing and testing of native Ephemeroptera …

Responses Of Arthropods To Fire And How Pollinators And Pollination Services Are Affected By Fire Severity, Blyssalyn V. Bieber

Electronic Theses and Dissertations

Fires impact ecosystems globally and due to climate change, there are shifts in fire regimes that impact ecological communities which provide essential ecosystem services. Focusing on arthropods, fire can influence this ubiquitous animal group in various way. We performed a comprehensive meta-analysis evaluating how fires impact differing arthropod functional groups. We found that overall, fire negatively effects community level responses for most functional groups with herbivores as the only exception showing some positive effects of fire. We also studied mixed-severity fires that burned >20 years ago and compared floral visitor communities across fire severities. We implemented a pollinator exclusion experiment …

Environmental Gradients Impact Key Leaf Traits In Riparian Trees, Amanda Malone

Electronic Theses and Dissertations

Specific leaf area (SLA) reflects a plant’s carbon investment per area and relates to generalized leaf economics spectrum growth strategies (LES). To fill gaps of knowledge about intraspecific SLA variation and why it is often inconsistent with the LES, we studied the response of two riparian tree species along the urban-rural gradient in Northeastern Colorado: an invasive, nitrogen-fixer with broad tolerances and a nitrogen-limited and shade-intolerant native. Despite these differences, the two species responded similarly, apart from the response to the urban-rural gradient, in which lower nitrogen in rural areas was associated with a more conservative strategy in the native …

Morphological Variation And Community Science In Orthoptera, Amy Byerly

Electronic Theses and Dissertations

Patterns of morphological divergence across species’ ranges provide insight into local adaptation and speciation. Here, we compare phenotypic divergence among 4,221 crickets from 337 populations of two related species of field cricket, Gryllus firmus and G. pennsylvanicus and their hybrids. We find that these species differ across their geographic range in key morphological traits, such as body size and ovipositor length, and we directly compare phenotype with genotype for a subset of crickets demonstrating nuclear genetic introgression, phenotypic intermediacy of hybrids, and essentially unidirectional mitochondrial introgression. We discuss how these morphological traits relate to life history differences between the species. …

Ms Environmental Biology Capstone Project, Samantha Ortega

Regis University Student Publications (comprehensive collection)

This project is presented in partial fulfillment of the requirements for the degree Masters of Science in Environmental Biology at Regis University. Chapter 1 is a literature review that discusses the management implications of designing bird habitat on anthropogenic structures. Chapter 2 is a grant proposal to explore niche dominance by anthropophilic bird species in Denver, CO. Chapter 3 is a journal manuscript discussing how musth impacts captive bull Asian elephant (Elephas maximus) behavior at Denver Zoo. Finally, Chapter 4 is a stakeholder analysis for Northern Bobwhite recovery at Bridgestone-Firestone Centennial Wilderness Area, White County, Tennessee.

Ephemeroptera Culturing Methods: Development Of Culturing And Rearing Methodology And High Sulfate Simulated Mine Effluent Toxicity Test Using Field Collected Water, Daniel Edward Brady

Theses, Dissertations and Capstones

Ephemeroptera taxa are not frequently used in toxicity testing; however, some mayfly taxa may be more sensitive to aquatic pollutants than standard test organisms used to determine anthropogenic effects on aquatic ecosystems. Additionally, some standard test organisms are not native to the Appalachian region and may not be truly reflective of the effects on native organisms. With mayflies not being the typical test organism, there is not a great deal of literature on culturing methods for this organism. For a standard acute toxicity test, there must be 80% survival within the control organisms for the test to be considered viable. …

Mortality Risk Associated With Urban Land Use For Adult Eastern Diamondback Rattlesnakes (Crotalus Adamanteus), Mya Wiles

Theses, Dissertations and Capstones

Snakes have been a traditionally under-represented organism in urban ecology, but they face similar, if not greater challenges in the face of growing urban sprawl. Eastern diamondback rattlesnakes (Crotalus adamanteus, EDBs) are under consideration for listing under the Endangered Species Act due to population declines resulting from historical human persecution and habitat loss. This study used radio-telemetry data from a long-term monitoring project of adult EDBs on a developed sea island in South Carolina, USA. I reclassified a National Land Cover Dataset to reflect relative mortality risk for snakes attempting to move through the landscape. High-risk cover types …

Comparing Trebouxia Diversity In Lichen Genera Sympatric With The Niebla Species Complex., Anthony Perugini, Louise A. Lewis, Zachary M. Muscavitch

Undergraduate Papers

Lichens are one of the most successful mutualisms on Earth. The ecology and distribution of lichen symbionts likely influences their association and genetic structure . Two sister genera of lichenized fungi Niebla and Vermilicinia are endemic to the fog deserts on the west coast of North America. Species of Trebouxia, a genus of green algae found worldwide, are the associated photobiont partners to the Niebla/Vermilicinia species complex. Recent work demonstrated that Niebla and Vermilicinia are highly specific for only a few closely related Trebouxia molecular species (OTUs). This project examines the diversity and broad specificity of algae with lichen …

Re-Storying Grant Creek: A Case Study Of Relational Dynamics On A Degraded Montana Stream, Seamus Rucci Land

Graduate Student Theses, Dissertations, & Professional Papers

The UN Decade on Ecosystem Restoration began in 2021, and after a history of contentious ethical debates, ecological restoration is increasingly portrayed as a viable framework for combating environmental degradation and supporting more healthy and stable social-ecological systems. The proposed ecological restoration of Grant Creek, a degraded stream near Missoula, Montana, offers an opportunity to connect a restoration site to the broader, rapidly growing field of restoration practice. It also allows the opportunity to forward the ‘relational turn’ proposed by many in the sustainability sciences as an ontological and methodological means to move beyond positivist portrayals of social-ecological systems, which …

A Comparison Of Wildfire Adaptive Traits In Juvenile Conifers Of The Northern Rockies, Andie Sonnen

Undergraduate Theses, Professional Papers, and Capstone Artifacts

Wildfire is an importance disturbance that continues to shape the ecosystems of the northern Rockies through varying patterns of frequency and intensity. Due to historical fire suppression and the hotter and drier conditions brought upon by anthropogenic climate change, wildfire frequency and intensity is increasing. These increases will alter vegetation structure and composition, but the degree to which is unknown.

Individual plant traits can offer insight into how these vegetation communities will shift, especially the particular traits that reduce fire-related mortality. To survive wildfires, juvenile northern conifers employ two strategies: increasing their bark thickness and increasing their crown height. To …

The Decline Of Lake Superior's Woodland Caribou: A Historical Gis Analysis, Jordan W. Kelley

Dissertations, Master's Theses and Master's Reports

Lake Superior’s woodland caribou have been declining since the early 1800s. This thesis asks: why? We hypothesize that as settlers expanded into the region, industrial development in woodland caribou habitat reduced woodland caribou persistence. Using an Historical Geospatial Information System (HGIS) analysis, we find that historical mining and railroad infrastructure are associated with woodland caribou extirpation, while wetlands and protected areas are associated with caribou persistence. We also conducted a stakeholder synthesis of the region to help understand diverse perspectives within and between advocacy coalitions that take different positions on the most effective caribou restoration policies. Beliefs on recovery options …

Effects Of Dissimilar Silvicultural Techniques On Small Mammal Communities In Michigan's Upper Peninsula, Breanna R. Gusick

Dissertations, Master's Theses and Master's Reports

Small mammal populations, and predators reliant upon them as food resources, are often challenged by conflicting objectives of timber production and maintenance of quality habitat. With over 70% of the landscape forested, and nearly one-third of the land privately owned, Michigan’s Upper Peninsula (UP) is a matrix of independent management strategies. To assess the effects of various silvicultural regeneration methods on small mammal populations in the Upper Peninsula, we trapped small mammals in experimental silviculture plots, whereby treatments varied by regeneration method (amount of residual canopy cover) and site preparation (i.e., control, tip-up, and scarification), and deer exclosures. We used …

Avian Haemosporidian Blood Parasite Diversity, Prevalence, And Distribution In Michigan’S Western Upper Peninsula, Maria M. Ferrer

Dissertations, Master's Theses and Master's Reports

Avian haemosporidian parasites, known as avian malaria (phylum Apicomplexa) can diminish an individual bird’s fitness by causing parasitemia, anemia, and reduced survival. Climate change is predicted to increase the spread of malarial parasites into more northerly latitudes where little is known about community compositions of these parasites. I assessed the prevalence and diversity of haemosporidian parasites in the first-ever community-level sampling of malaria in songbirds across the western Upper Peninsula of Michigan. In total, 179 blood samples were collected from birds representing 17 species, at five locations in the Upper Peninsula, including a mature forest, an early successional forest, and …

Understanding The Environmental Implications Of The Microbiome Of Canals In Bangkok, Thailand, Emma Tao

Scripps Senior Theses

The canals of Bangkok, Thailand hold significant economic and social value, yet the increasing urbanization of the city has resulted in increased water pollution. Agricultural runoff and urban waste contribute to the degradation of the water quality, which has impaired its safe usage by the people of the city. This study focused on analyzing the microbiome of the water in the canals in correlation with the surrounding environment, both in and out of the water. Ten sites along the Bangkok canals were analyzed. DNA was isolated for the sequencing of the 16s rRNA gene to determine the microbial diversity of …

An Integrative Investigation Of The Synechococcus A/B Clade During Adaptive Radiation At The Upper Thermal Limit Of Phototrophy, Christopher L. Pierpont

Graduate Student Theses, Dissertations, & Professional Papers

Thermophilic microorganisms have been scientifically observed since the early nineteenth century and have spurred many questions about the limits of life and the capacity of organisms to survive extreme conditions. Decades of research on thermophile proteins and genomes have yielded several proposed correlates of temperature that may contribute to adaptation of bacteria and archaea to high temperature. However, many of the generalizations reported are drawn from analyses of deeply divergent taxa or from individual case studies in isolation from mesophilic relatives. Members of the Synechococcus A/B (SynAB) group are the only cyanobacteria with members able to grow above 65 °C …

Effects Of Melatonin Implantation On The Activity Levels Of Captive Snow Buntings (Plectrophenax Nivalis), Zoë Ward

Mahurin Honors College Capstone Experience/Thesis Projects

In vertebrates, melatonin regulates many components of the circadian rhythm; depending on the organism’s location and time of year, the pineal gland will produce melatonin accordingly, controlling the sleep-wake cycle and breeding physiologies. However, locations at the poles in which the sun is above the horizon for multiple days at a time pose unique challenges for the organisms living there. The goal of this study was to examine how the implantation of melatonin in an arctic-breeding songbird affects its activity levels and circadian rhythm. The subject of this study, the snow bunting (Plectrophenax nivalis), is a small songbird …

Activity Patterns Of The Del Norte Salamander (Plethodon Elongatus): Monitoring Plethodontid Behavior Using Pit Tag Surveys, Sabrina Horrack

Cal Poly Humboldt theses and projects

Semi-fossorial plethodontid salamanders exhibit behavioral plasticity to avoid desiccation, retreating underground to shelter from adverse conditions such as low precipitation and high temperatures. In this study, I used passive integrated transponder (PIT) tag surveys to monitor this behavior in the Del Norte salamander (Plethodon elongatus), a small plethodontid native to northwestern California and southwestern Oregon. Within its range, a climatic gradient exists in which coastal areas experience milder temperatures and high precipitation, while inland areas tend to have colder winters, hotter summers, and lower precipitation. By monitoring the activity patterns of this species in inland and coastal areas, …