Evolution Commons^™

Stochastic Difference Model For Evolutional Dynamics Of Large Antigen Repertoires In African Trypanosomes, Fan Yu

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Notes On The Genera Buthacus, Compsobuthus, And Lanzatus With Several Synonymies And Corrections Of Published Characters (Scorpiones: Buthidae), František Kovařík

Euscorpius

The taxonomic position of Buthacus armasi Lourenço, 2013, B. clevai Lourenço, 2001, B. huberi Lourenço, 2001, B. maliensis Lourenço & Qi, 2007, B. nigerianus Lourenço & Qi, 2006, Compsobuthus andresi Lourenço, 2004, C. simoni Lourenço, 1999, C. tassili Lourenço, 2010, C. tofti Lourenço, 2001, C. williamsi Lourenço, 1999, and Sabinebuthus elegans Lourenço, 2001 is revised and fictitious characters in their original descriptions are discussed and corrected. Buthacus armasi Lourenço, 2013 is synonymized with Buthacus leptochelys (Ehrenberg, 1829) syn. n., B. huberi Lourenço, 2001 is confirmed to be a synonym of Buthacus occidentalis Vachon, 1953, B. maliensis Lourenço & Qi, …

Males And Females Evolve Riskier Traits In Populations With Eavesdropping Parasitoids, Oliver M. Beckers, William E. Wagner

School of Biological Sciences: Faculty Publications

Predation and/or parasitism often limits the evolution of conspicuous male traits and female preferences because conspicuous traits can attract predators or parasites and it is costly for females to associate with males that attract predators or parasites. As a result, males and females in high-risk populations are expected to evolve safer mating behaviors compared to individuals from low-risk populations. We tested this antagonistic selection hypothesis in the field cricket Gryllus lineaticeps. Males produce chirped songs, and both female crickets and the eavesdropping parasitoid fly Ormia ochracea prefer faster chirp rates. The flies attack the field crickets late in the …

Three New Chaerilus From Malaysia (Tioman Island) And Thailand (Scorpiones: Chaerilidae), With A Review Of C. Cimrmani, C. Sejnai, And C. Tichyi, František Kovařík, Graeme Lowe, František Šťáhlavský

Euscorpius

Chaerilus majkusi sp. n. from Malaysia (Tioman Island), C. neradorum sp. n. and C. stockmannorum sp. n. from Thailand are described and fully illustrated with color photographs of live and preserved specimens, as well as of their habitat. They are compared to the species C. cimrmani Kovařík, 2012, C. sejnai Kovařík, 2005, and C. tichyi Kovařík, 2000, which we also illustrate with color photographs of live unpublished specimens. Hemispermatophores of C. cimrmani, C. majkusi sp .n., C. stockmannorum sp. n., and C. tichyi are illustrated and compared, and we also describe the karyotypes of C. cimrmani, C. …

Crispr Knockouts Reveal An Endogenous Role For Ancient Neuropeptides In Regulating Developmental Timing In A Sea Anemone, Nagayasu Nakanishi, Mark Q. Martindale

Biological Sciences Faculty Publications and Presentations

Neuropeptides are evolutionarily ancient peptide hormones of the nervous and neuroendocrine systems, and are thought to have regulated metamorphosis in early animal ancestors. In particular, the deeply conserved Wamide family of neuropeptides—shared across Bilateria (e.g. insects and worms) and its sister group Cnidaria (e.g. jellyfishes and corals)—has been implicated in mediating life-cycle transitions, yet their endogenous roles remain poorly understood. By using CRISPR-Cas9-mediated reverse genetics, we show that cnidarian Wamide—referred to as GLWamide—regulates the timing of life cycle transition in the sea anemone cnidarian Nematostella vectensis. We find that mutant planula larvae lacking GLWamides transform into morphologically normal polyps …

Confirming World-Wide Distribution Of An Agriculturally Important Lacewing, Chrysoperla Zastrowi Sillemi, Using Songs, Morphology, Mitochondrial Gene Sequencing, And Phylogenetic Reconstruction, Zoe Mandese

Honors Scholar Theses

The Chrysoperla carnea-group of green lacewings is a cryptic species complex. Species within the group are morphologically similar, yet isolated from one another via reproductive mating song. Chrysoperla zastrowi, a species within the carnea-group, is currently described with a distribution ranging from South Africa to the Middle East and India. However, recent collections of carnea-group lacewings from Guatemala and California were preliminarily identified as Chrysoperla zastrowi based upon similarities in their vibrational courtship songs. This analysis aims to place six specimens, collected by collaborators in Guatemala, Armenia, Iran, and California, into a pre-existing phylogeny of the …

Review Of The Genus Babycurus Karsch, 1886 (Arachnida, Scorpiones, Buthidae), With Descriptions Of Barbaracurus Gen. N. And Two New Species From Oman And Yemen, František Kovařík, Graeme Lowe, František Šťáhlavský

Euscorpius

The genus Babycurus Karsch, 1886 sensu lato is split into two genera, a strictly African genus Babycurus, and the new genus Barbaracurus gen. n., which mainly includes species from the Horn of Africa and Arabian Peninsula. Two new species Barbaracurus winklerorum sp. n. from Oman and B. yemenensis sp. n. from Yemen are described, compared with other species, and fully illustrated with color photos of morphology, habitus, live specimens and collection localities. Males of Barbaracurus somalicus (Hirst, 1907) comb. n. and Barbaracurus zambonellii (Borelli, 1902) comb. n. are recorded for the first time and fully illustrated. Babycurus ornatus …

The Transcriptome Of The Bermuda Fireworm Odontosyllis Enopla (Annelida: Syllidae): A Unique Luciferase Gene Family And Putative Epitoky-Related Genes, Mercer R. Brugler, M. Teresa Aguado, Michael Tessler, Mark Siddall

Publications and Research

The Bermuda fireworm Odontosyllis enopla exhibits an extremely tight circalunar circadian behavior that results in an impressive bioluminescent mating swarm, thought to be due to a conventional luciferase-mediated oxidation of a light-emitting luciferin. In addition, the four eyes become hypertrophied and heavily pigmented, and the nephridial system is modified to store and release gametes and associated secretions. In an effort to elucidate transcripts related to bioluminescence, circadian or circalunar periodicity, as well as epitoky-related changes of the eyes and nephridial system, we examined the transcriptomic profile of three female O. enopladuring a bioluminescent swarm in Ferry Reach, Bermuda. …

Genomic Signatures Of Adaptive Evolution, Jessica A. Weber

Biology ETDs

Comparative genomics has revolutionized virtually all fields of biology including the study of evolution. In this dissertation, I used next-generation sequencing to explore the evolutionary histories and adaptive evolution of a diverse set of taxa. Comparisons ranged across time scales, from population-level genetic diversity studies to questions spanning the deepest branches of the metazoan lineage. Whole genome sequencing of 50 unrelated Korean individuals revealed that Koreans have a distinct genetic history from the Chinese and Japanese populations. Our Korean-specific variome database was used to identify novel disease-causing variants in the Korean population, highlighting the value of high-quality ethnic variation databases …

A New Scorpion Species From Kenya, Gint Childsi Sp. N. (Scorpiones: Buthidae), Frantíšek Kovařík

Euscorpius

Gint childsi sp. n. from Kenya is described and compared with other species of the genus. Additional information is provided on the taxonomy and distribution of the genus Gint, fully complemented with color photos of preserved specimens of both sexes of the new species, as well as of their habitat.

Two New Hottentotta Species From Iran, With A Review Of Hottentotta Saulcyi (Scorpiones: Buthidae), Frantíšek Kovařík, Ersen Aydin Yağmur, Mohammed Moradi

Euscorpius

Two new buthid species from Iran, Hottentotta navidpouri sp. n. (Hormozgan Province) and H. sistanensis sp. n. (Sistan and Baluchestan Province) are described, compared with H. saulcyi (Simon, 1880), and fully illustrated with color photos. The two new species differ from H. saulcyi mainly in shape of chela, which is strongly elongated in both new species.

A New Species Of Microtityus From The British Virgin Islands, West Indies, And New Localities For Other Scorpions (Scorpiones: Buthidae, Scorpionidae), Luis F. De Armas

Euscorpius

Microtityus (Parvabsonus) eustatia sp. n. is herein described from the British Virgin Islands (West Indies): Eustatia Island (type locality), Virgin Gorda Island, and Camanoe Island, based on seven specimens (three males and four females). The new species closely resembles M. waeringi Francke & Sissom, 1980 from St. John Island and St. Thomas Island, U.S. Virgin Islands, differing mainly by the fixed finger of pedipalp having ten rows of denticles (nine in M. waeringi) and more attenuated metasoma. Also, new localities are recorded for Heteronebo yntemai Francke & Sissom, 1980 (Scorpionidae) and Centruroides griseus (C. L. Koch, 1844) …

Transcriptomics Of Learning, Pablo Iturralde

Theses

Learning is a basic and important component of behavior yet we have very little empirical information about the interaction between mechanisms of learning and evolution. In our work, we are testing hypotheses about the neurogenetic mechanisms through which animal learning abilities evolve. We are able to test this directly by using experimentally evolved populations of flies, which differ in learning ability. These populations were previously evolved within the lab by creating worlds with different patterns of change following theoretically predicted effects on which enhanced learning will evolve. How has evolution acted to modulate genes and gene expression in the brain …

Species Distribution And Conservation Genetics Of The Upland And Midland Chorus Frogs (Pseudacris) In Kentucky, Tucker Cambridge

Masters Theses & Specialist Projects

The upland (Pseudacris feriarum) and midland (P. triseriata) chorus frogs are closely related cryptic species that are best distinguished genetically. The distribution of these species within the Commonwealth of Kentucky has previously been defined by only a handful of genetic samples, making delineation of range limits for each species difficult. Accurate understanding of species distributions, and the genetic structure within them, are vitally important for conservation management of amphibian species. In this study, I have collected genetic samples from across the putative ranges of P. triseriata and P. feriarum in Kentucky and used next-generation sequencing technology to generate more fine-scale …

Review Of Microbuthus With Description Of M. Satyrus Sp. N. (Scorpiones, Buthidae) From Oman And Yemen, Graeme Lowe, František Kovařík, Mark Stockmann, František Šťáhlavský

Euscorpius

The taxonomy of the genus Microbuthus is reviewed, and a new species from Oman and Yemen, M. satyrus sp. n., is described and fully illustrated with color photographs of live and preserved specimens, as well as of its habitat. It is compared to the closely similar species M. litoralis, which we also illustrate. Synonymy of the type species M. pusillus Kraepelin, 1898 with M. litoralis (Pavesi, 1885) is confirmed, and the species is recorded for the first time from Yemen. Hemispermatophores of M. satyrus sp. n., M. gardneri Lowe, 2010, and …

Determining The Drivers Of Anti-Tropical Distributions Across The Fish Tree Of Life, William Benton Ludt

LSU Doctoral Dissertations

Anti-tropical distributions are those where populations of a single species, or multiple closely related taxa, are distributed outside of, and on opposing sides of, the tropics. These latitudinally disjunct distributions have been noted for over a century. Despite this long history of interest, little has been concluded regarding the actual mechanisms that drive this pattern, with several prominent hypotheses competing with one another in the literature. Here I review the proposed drivers of anti-tropicality, and subsequently test them using fishes with a variety of life history and taxonomic differences. This includes (1) a temperately restricted family with anti-tropical distributions – …

Study Of The Visual Adaptation Mechanism In Marine Species With The Change Of Habitation Depth., Demid Osipov, Daniil Moshnikov

The International Student Science Fair 2018

The goal of our work was to determine the principal mechanisms that provide the difference in visual perception of two marine species that live on different depths: T. Pacificus and O. Vulgaris. In nature, visual perception of species that live deeper is shifted towards the blue region. This is related to the fact that red, orange and yellow light is absorbed more strongly by water than the blue light. On the other hand, the visual perception spectrum of an animal is determined by the absorption spectrum of the "light sensor" located in rods and cones of its eye retina. These …

Computational Analysis Of Papionini Evolution Using Alu Insertions, Vallmer Edward Jordan Ii

LSU Doctoral Dissertations

Alu elements are primate specific retrotransposons that have remained active throughout the course of primate evolution. As a result of this sustained mobilization. Alu elements are present in greater copy number in primate genomes than any other transposable element. An average of over one million Alu elements has been identified in every sequenced haplorrhine genome to date. These characteristics qualify Alu elements as ideal characters for studying evolutionary relationship among primates.

The increasing availability of whole genome sequencing data presents novel challenges and opportunities for comparative genomic analyses. Genomic data is now publicly available for most primate species. Such an …

Chamaecrista Fasciculata In Tallgrass And Sand Prairies: The Potential For Differential Responses, Robert W. Philips

Theses and Dissertations

Successful establishment of a diversity of native species has become an important goal for restoration site managers to achieve, however as seed sources for a species may occur in habitats with different abiotic and biotic characteristics. Consequently, seeds from different sources may vary in their success in a restoration. Chamaecrista fasciculata, a native prairie species, occurs in two divergent prairie types - tallgrass and sand prairies. Tallgrass prairies have a moist soil with dense vegetation; in contrast, sand prairies have a well-drained sandy soil with sparse vegetation. I propose differential selection acting on populations in these prairie types would affect …

Anchored Phylogenomics Illuminates The Skipper Butterfly Tree Of Life, Emmanuel F. A. Toussaint, Jesse W. Breinholt, Chandra Earl, Andrew D. Warren, Andrew V. Z. Brower, Masaya Yago, Kelly M. Dexter, Marianne Espeland, Naomi E. Pierce, David J. Lohman, Akito Y. Kawahara

Publications and Research

Background: Butterflies (Papilionoidea) are perhaps the most charismatic insect lineage, yet phylogenetic relationships among them remain incompletely studied and controversial. This is especially true for skippers (Hesperiidae), one of the most species-rich and poorly studied butterfly families.

Methods: To infer a robust phylogenomic hypothesis for Hesperiidae, we sequenced nearly 400 loci using Anchored Hybrid Enrichment and sampled all tribes and more than 120 genera of skippers. Molecular datasets were analyzed using maximum-likelihood, parsimony and coalescent multi-species phylogenetic methods.

Results: All analyses converged on a novel, robust phylogenetic hypothesis for skippers. Different optimality criteria and methodologies recovered almost …